EWM28090.1, cds2583 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28090.1 vs. NCBI_GenBank
Match: gi|585110433|gb|EWM28090.1| (protein-er retention protein [Nannochloropsis gaditana]) HSP 1 Score: 976.852 bits (2524), Expect = 0.000e+0 Identity = 488/488 (100.00%), Postives = 488/488 (100.00%), Query Frame = 0
Query: 1 MEVGGGETVESVLKRLDQKSEYAVVRGTCVGILFISLWALNLHVFKVAHIDISCIYPAKLVSAGGYGGSGKSDHGSGSGGSSKDVGRTTGSRRSPSAVLQKQQQQAQQPVCHPRKVINLVTVLVLAMVFCILIMSELLGQPYQHAPFIFYFLLLAAVIYPSDTTLMFRELALLFGRVLWLVVLPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLSPGLFRIVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWLPLLLAPHYSTYQIERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSINGGRKGGGLLGRVETPMGGGIGMVAIGSKRAGGNGAGNTLARDMEGEVDLERSVGIETESGGGEGTDVTTVLLSR 488
MEVGGGETVESVLKRLDQKSEYAVVRGTCVGILFISLWALNLHVFKVAHIDISCIYPAKLVSAGGYGGSGKSDHGSGSGGSSKDVGRTTGSRRSPSAVLQKQQQQAQQPVCHPRKVINLVTVLVLAMVFCILIMSELLGQPYQHAPFIFYFLLLAAVIYPSDTTLMFRELALLFGRVLWLVVLPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLSPGLFRIVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWLPLLLAPHYSTYQIERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSINGGRKGGGLLGRVETPMGGGIGMVAIGSKRAGGNGAGNTLARDMEGEVDLERSVGIETESGGGEGTDVTTVLLSR
Sbjct: 1 MEVGGGETVESVLKRLDQKSEYAVVRGTCVGILFISLWALNLHVFKVAHIDISCIYPAKLVSAGGYGGSGKSDHGSGSGGSSKDVGRTTGSRRSPSAVLQKQQQQAQQPVCHPRKVINLVTVLVLAMVFCILIMSELLGQPYQHAPFIFYFLLLAAVIYPSDTTLMFRELALLFGRVLWLVVLPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLSPGLFRIVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWLPLLLAPHYSTYQIERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSINGGRKGGGLLGRVETPMGGGIGMVAIGSKRAGGNGAGNTLARDMEGEVDLERSVGIETESGGGEGTDVTTVLLSR 488
BLAST of EWM28090.1 vs. NCBI_GenBank
Match: gi|298711970|emb|CBJ32912.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 168.318 bits (425), Expect = 7.640e-44 Identity = 134/407 (32.92%), Postives = 201/407 (49.39%), Query Frame = 0
Query: 23 AVVRGTCVGILFISLWALNLHVFKVAHIDISCIYPAKLVSAGGYGGSGKSDHGSGSGGSSKDVGRTTGSRRSPSAVLQKQQQQAQQPVCHPRKVINLVTVLVLAMVFCILIMSELLGQPYQHAPFIFYFLLLAAVIYPSDTTLMFRELALLFGRVLWLVVLPGTEIHFLEVLVGDILTSLSKVFFEVGLT--CVATLLSLS-PGLFRIVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWLPLLLA-PHYSTYQ----IERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLF--GSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSINGGRKG 419
A VR V +F+ LW L + V + I+ S + SG +++D G T+G + P+ V R+V++ + ++ CI S +L P A FYF+L A++ P + + AL F L V P T++HF EVLV D LTSLS+VF +V +T VA + PG + +P +F AS P+ +R+RQCV+Q K + L+++N+ KY S+ P +WL A HY + + ++ L+NS+YSF WDV MDWGLG ++G R WGLR TLL + YY A+ +DLVLRL WV + + R +L +E +E+LRR +W+++R+EWEC+ GG K
Sbjct: 13 ASVRVPLVLAVFLGLWGLVILVLQALQIEFSSVL----------------RKASGPRLATEDQGDTSGKGK-PTRVPTPPSW---------RQVVSTAAGFLGVLLACIH-GSRMLRVPPTVAVGGFYFILGGALLVPLQAPSVRQHTALFFTS-LAGVFFPATDVHFAEVLVADALTSLSRVFADVAVTFLLVAKGWGMRYPGWAFLYTPCVF----ASFPYWVRVRQCVMQLTYEVDPKRKLLLAINVGKYLSAFPVIWLTGYQAMRHYDGAAYLPGVGKAIIAAALLNSVYSFAWDVKMDWGLG--------QRGS------RRWGLRNTLLICHEAPWPYYVAVAVDLVLRLTWVARLA--EERFRSVDMVLTLELVEILRRSMWNVFRLEWECIQCLGGAKA 371
BLAST of EWM28090.1 vs. NCBI_GenBank
Match: gi|224003725|ref|XP_002291534.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973310|gb|EED91641.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 135.576 bits (340), Expect = 4.153e-31 Identity = 120/451 (26.61%), Postives = 202/451 (44.79%), Query Frame = 0
Query: 23 AVVRGTCVGILFISLWALNLHVFKVAHIDISCIYPAKLVSAGGY----GGSGKSDHGSGSGGSSKDVGRTTGSRR-------------------SPSAVLQKQQQQAQQPVCHPRKVINLVTVLVLAMVFCILIMSELLGQPYQHAPFIFYFLLLAAVIYPSDTTLMFRE-LALLFGRVLWLVV---------LPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLSPGLFRIVSPD----IFPTLLASTPFILRIRQCVVQRR--GTASGKARFLVSLNILKYCSSIPGLWLPLLLAPHYSTYQ-------IERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVR--------LRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSINGGRKG 419
A++R V I + LW +N+++F++ ID + + L+ G G + G GS GS + G + +R + SA+ A V K+I L++ + F I +++G A F FY +L + P +T R A + R+ L+ +P I F++V D + SLSK FF++G+ L L+ V D + P+ +AS P+++R RQC+V + ++ LN +KY +S LW PL ++ + T +E+V++ +L +NS YS WD+ MDWG+ P+ G V H LRP L FG+ S A + +D +LR W+L++ + S D ++L + LE +RR +W++ R+EWE + N G++
Sbjct: 20 ALLRSPTVIIAAVGLWGMNIYIFRLFGIDYAHVLTLDLIKEKEALTKDDGDGTEEDGEGSDGSIRSSGSASLEKRHGGATKNGKVDHRNGRSSSAGSAITTNTNIDANNDVTS-YKLIVFSLSLLVLLHFSTKIWIDVIGGTAIGAIFTFYSAVLIGICLPLPSTTWVRTACATIVHRIFELINPRCFCFREGMPRA-IPFIDVFFADAMCSLSKCFFDMGM-----LWHLAWHYPDPVPNDMHSILIPSFVASLPYLIRARQCLVMYTIGFMKNDPKKYQHMLNAIKYSTS---LW-PLCVSAYEKTVTSPEEKAFLEKVIIALLAINSTYSLAWDITMDWGMMQSPQVVVPESCAVGPVSSSNPGSKSCAHAVLRPRLRFGAVYSV-AILLVDTILRYSWLLRFYEHNLFASTDAYILCTQFLEAIRRSLWNLLRVEWEHIKQNRGKEA 458
BLAST of EWM28090.1 vs. NCBI_GenBank
Match: gi|566015045|gb|ETI37956.1| (hypothetical protein F443_16214 [Phytophthora parasitica P1569]) HSP 1 Score: 132.494 bits (332), Expect = 5.338e-30 Identity = 88/245 (35.92%), Postives = 132/245 (53.88%), Query Frame = 0
Query: 183 LPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLS--PGLFR-----IVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWL---PLLLA---PHYSTYQIERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSIN 414
LP F+EV + D +TSLSK ++ + + L+S + P R + P ASTP+I+R QC++ + T S RFL LN +KYCSS+ + + P+L+ P S++ L+ + NSLYSFLWDV+MDWGLG KL P + LRH L + YY I +D VLR++WV K+ ++ HR + F L+ + EV+RR IW+ R+EW+C+ ++
Sbjct: 142 LPAHATPFIEVFMADGMTSLSKFIQDLSVALMLLLMSFTSEPEDLRESYISKLKNSPLPYFAASTPYIIRATQCLISFQRTPSVNDRFLHLLNTMKYCSSLLVISVGAYPMLMGLSRPEQSSF-----FLLCAVFNSLYSFLWDVVMDWGLGQPKL---PHRVAF----LRH-----QLTYRPRKIYYLVIVVDFVLRILWVTKWWDWMHRGVH--FKLVSQVAEVVRRIIWNFVRVEWQCIKLD 367
BLAST of EWM28090.1 vs. NCBI_GenBank
Match: gi|568010636|gb|ETL84821.1| (hypothetical protein L917_15477 [Phytophthora parasitica]) HSP 1 Score: 132.494 bits (332), Expect = 5.444e-30 Identity = 88/245 (35.92%), Postives = 132/245 (53.88%), Query Frame = 0
Query: 183 LPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLS--PGLFR-----IVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWL---PLLLA---PHYSTYQIERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSIN 414
LP F+EV + D +TSLSK ++ + + L+S + P R + P ASTP+I+R QC++ + T S RFL LN +KYCSS+ + + P+L+ P S++ L+ + NSLYSFLWDV+MDWGLG KL P + LRH L + YY I +D VLR++WV K+ ++ HR + F L+ + EV+RR IW+ R+EW+C+ ++
Sbjct: 142 LPAHATPFIEVFMADGMTSLSKFIQDLSVALMLLLMSFTSEPEDLRESYISKLKNSPLPYFAASTPYIIRATQCLISFQRTPSVNDRFLHLLNTMKYCSSLLVISVGAYPMLMGLSRPEQSSF-----FLLCAVFNSLYSFLWDVVMDWGLGQPKL---PHRVAF----LRH-----QLTYRPRKIYYLVIVVDFVLRILWVTKWWDWMHRGVH--FKLVSQVAEVVRRIIWNFVRVEWQCIKLD 367
BLAST of EWM28090.1 vs. NCBI_GenBank
Match: gi|675204865|ref|XP_008911317.1| (hypothetical protein PPTG_15760 [Phytophthora parasitica INRA-310] >gi|568088687|gb|ETN03544.1| hypothetical protein PPTG_15760 [Phytophthora parasitica INRA-310]) HSP 1 Score: 132.109 bits (331), Expect = 5.885e-30 Identity = 88/245 (35.92%), Postives = 132/245 (53.88%), Query Frame = 0
Query: 183 LPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLS--PGLFR-----IVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWL---PLLLA---PHYSTYQIERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSIN 414
LP F+EV + D +TSLSK ++ + + L+S + P R + P ASTP+I+R QC++ + T S RFL LN +KYCSS+ + + P+L+ P S++ L+ + NSLYSFLWDV+MDWGLG KL P + LRH L + YY I +D VLR++WV K+ ++ HR + F L+ + EV+RR IW+ R+EW+C+ ++
Sbjct: 142 LPAHATPFIEVFMADGMTSLSKFIQDLSVALMLLLMSFTSEPEDLRESYISKLKNSPLPYFAASTPYIIRATQCLISFQRTPSVNDRFLHLLNTMKYCSSLLVISVGAYPMLMGLSRPEQSSF-----FLLCAVFNSLYSFLWDVVMDWGLGQPKL---PHRVAF----LRH-----QLTYRPRKIYYLVIVVDFVLRILWVTKWWDWMHRGVH--FKLVSQVAEVVRRIIWNFVRVEWQCIKLD 367
BLAST of EWM28090.1 vs. NCBI_GenBank
Match: gi|568040524|gb|ETM37976.1| (hypothetical protein L914_15622 [Phytophthora parasitica]) HSP 1 Score: 132.109 bits (331), Expect = 5.885e-30 Identity = 88/245 (35.92%), Postives = 132/245 (53.88%), Query Frame = 0
Query: 183 LPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLS--PGLFR-----IVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWL---PLLLA---PHYSTYQIERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSIN 414
LP F+EV + D +TSLSK ++ + + L+S + P R + P ASTP+I+R QC++ + T S RFL LN +KYCSS+ + + P+L+ P S++ L+ + NSLYSFLWDV+MDWGLG KL P + LRH L + YY I +D VLR++WV K+ ++ HR + F L+ + EV+RR IW+ R+EW+C+ ++
Sbjct: 142 LPAHATPFIEVFMADGMTSLSKFIQDLSVALMLLLMSFTSEPEDLRESYISKLKNSPLPYFAASTPYIIRATQCLISFQRTPSVNDRFLHLLNTMKYCSSLLVISVGAYPMLMGLSRPEQSSF-----FLLCAVFNSLYSFLWDVVMDWGLGQPKL---PHRVAF----LRH-----QLTYRPRKIYYLVIVVDFVLRILWVTKWWDWMHRGVH--FKLVSQVAEVVRRIIWNFVRVEWQCIKLD 367
BLAST of EWM28090.1 vs. NCBI_GenBank
Match: gi|567952468|gb|ETK78143.1| (hypothetical protein L915_15775 [Phytophthora parasitica] >gi|567981132|gb|ETL31578.1| hypothetical protein L916_15666 [Phytophthora parasitica] >gi|570942586|gb|ETP07843.1| hypothetical protein F441_16043 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 132.109 bits (331), Expect = 5.885e-30 Identity = 88/245 (35.92%), Postives = 132/245 (53.88%), Query Frame = 0
Query: 183 LPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLS--PGLFR-----IVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWL---PLLLA---PHYSTYQIERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSIN 414
LP F+EV + D +TSLSK ++ + + L+S + P R + P ASTP+I+R QC++ + T S RFL LN +KYCSS+ + + P+L+ P S++ L+ + NSLYSFLWDV+MDWGLG KL P + LRH L + YY I +D VLR++WV K+ ++ HR + F L+ + EV+RR IW+ R+EW+C+ ++
Sbjct: 142 LPAHATPFIEVFMADGMTSLSKFIQDLSVALMLLLMSFTSEPEDLRESYISKLKNSPLPYFAASTPYIIRATQCLISFQRTPSVNDRFLHLLNTMKYCSSLLVISVGAYPMLMGLSRPEQSSF-----FLLCAVFNSLYSFLWDVVMDWGLGQPKL---PHRVAF----LRH-----QLTYRPRKIYYLVIVVDFVLRILWVTKWWDWMHRGVH--FKLVSQVAEVVRRIIWNFVRVEWQCIKLD 367
BLAST of EWM28090.1 vs. NCBI_GenBank
Match: gi|570973174|gb|ETP35878.1| (hypothetical protein F442_16066 [Phytophthora parasitica P10297]) HSP 1 Score: 131.724 bits (330), Expect = 7.962e-30 Identity = 88/245 (35.92%), Postives = 132/245 (53.88%), Query Frame = 0
Query: 183 LPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLS--PGLFR-----IVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWL---PLLLA---PHYSTYQIERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSIN 414
LP F+EV + D +TSLSK ++ + + L+S + P R + P ASTP+I+R QC++ + T S RFL LN +KYCSS+ + + P+L+ P S++ L+ + NSLYSFLWDV+MDWGLG KL P + LRH L + YY I +D VLR++WV K+ ++ HR + F L+ + EV+RR IW+ R+EW+C+ ++
Sbjct: 142 LPAHATPFIEVFMADGMTSLSKFIQDLSVALMLLLMSFTSEPEDLRESYISKLKNSPLPYFAASTPYIIRATQCLISFQRTPSVNDRFLHLLNTMKYCSSLLVISVGAYPMLMGLSRPEQSSF-----FLLCAVFNSLYSFLWDVVMDWGLGQPKL---PHRVAF----LRH-----QLTYRPRKIYYLVIVVDFVLRILWVTKWWDWMHRGVH--FKLVSQVAEVVRRIIWNCVRVEWQCIKLD 367
BLAST of EWM28090.1 vs. NCBI_GenBank
Match: gi|970641465|gb|KUF83549.1| (Inositol monophosphatase 1 [Phytophthora nicotianae]) HSP 1 Score: 134.035 bits (336), Expect = 8.148e-30 Identity = 87/245 (35.51%), Postives = 130/245 (53.06%), Query Frame = 0
Query: 183 LPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLS--PGLFR-----IVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWL---PLLLA---PHYSTYQIERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSIN 414
LP F+EV + D +TSLSK ++ + + L+S + P R + P ASTP+I+R QC++ + T S RFL LN +KYCSS+ + + P+L+ P S++ L+ + NSLYSFLWDV+MDWGLG KL R LR L + YY I +D VLR++WV K+ ++ HR + F L+ + EV+RR IW+ R+EW+C+ ++
Sbjct: 439 LPAHATPFIEVFMADGMTSLSKFIQDLSVALMLLLMSFTSEPEDLRESYISKLKNSPLPYFAASTPYIIRATQCLISFQRTPSVNDRFLHLLNTMKYCSSLLVISVGAYPMLMGLSRPEQSSF-----FLLCAVFNSLYSFLWDVVMDWGLGQPKLPH------------RVAFLRHQLTYRPRTIYYLVIVVDFVLRILWVTKWWDWMHRGVH--FKLVSQVAEVVRRIIWNFVRVEWQCIKLD 664 The following BLAST results are available for this feature:
BLAST of EWM28090.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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