rna2590, rna2590 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2590
Unique Name	rna2590
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2444
Alignment location	CM002459.1:741162..743334 +

Link to JBrowse

Properties


Property Name	Value
Product	Lipid-binding START
Orig transcript id	gnl\|cribi\|Naga_100120g15.6959.mrna
Orig protein id	gnl\|cribi\|Naga_100120g15.6959
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:741162..743334 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100120g15	gene2477	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2590	rna2590-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28098.1	cds2582	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:741162..743334+
coding sequence from alignment at CM002459.1:741162..743334+

mRNA sequence

>rna2590 ID=rna2590|Name=rna2590|organism=Nannochloropsis gaditana|type=mRNA|length=2444bp
TCGGTAGCATCGCGCTTGACTTGAGGACCCAGCCACACACACCACACACC
TCCTCCTTGTCGTTTCCCGTCTTAAGCTTTCCTGTCTTTCTATTTGACCG
TTCACGGCGAAGAGATGGAAGAGACAGCATGAAATTTTCAATGTTACCAG
CACAATCTTTGTGGGTTTCGGTAGTCTTGTTCCATTCTGATTGCGCATTA
TTATCCGGACTATTGCCTTCAACGAACAACAACAGCAAGAGGCATCTGCA
AGGAACAGGGGCTCGATGACAGCAAATCACGATTTGAGGAGAGCAGATCG
GGCGAATGTGCAAGTGGTTCTACTATTGCTTGTTGTGCTAGGTGGAGCTG
CGGCCTTTCTTCTTCCATCTAAGCATTCGACCATCACTAGCAAGGCAACT
AGACGCGTGGCCCCTGTCCAGGCCACACCTTCTCCCGCGATCGACCAACA
CGATTTCGCGACCGTCAGTATTTTCAGTGGAAACGATGAGATCCAAACAT
TGGATGCTAAGGTATTGGCCGCCGCCAACGCGGGTCAACCTAGCAAAGGC
ACGGGCACCATGCCGCTCCTGGCGACGACAGTAGAGGAGAAGCCCTTTGA
CGCAGTAGTCAAAACATCCAGTGGCGCTCTTAAGGGATTTGAGGGGTTTG
CAGTGTTGGGAGCCTTGCCTTTGGCTTTTTTCTCTGCACGCACATTGGAC
AAAAAGCAGAAGGAGACCGAGGCGGAGGCTGCTCGACAAATGGAAGACGA
CGCGGCTCGCATGGCGCGTGAGGCCGAGCAAGCGAGGGTGAAGGCCCTTG
AGGACGCGCAAAAAGCTGCCAAGAGGGAGATGCTTGAGGCGAAGATCCAG
CGAGCCCGCGAAGAGGAGGAGCGCCTTCGCAAAAATCAAGAGATGGAATT
GGAACGAGAAAAACAGAAGCAAGAGCTCTTAGCCGCGCAGAAGGCGGCGG
AGCAGAAAGTACAACAAGAAAAGCGAGAGCAGGAGCAAGCGGAAGCATCC
CGCCTGCAAGCCAAACAACGAGAGGCGGCGGAGGCTGCCAAGCAGCTGAA
AATTGAGGAAGAAAAGGCGGCGCAGGCTCAGGCTGAGAAGGCCAAGGCAG
AGGCGGCGGCGGCGGCAGCAGCGGAGGCGAAAGCTAAGGCGGAGGAAGAG
CGGGCTATCGCTGAGGCCAAGGCTCAAGCAGAGGCAGCTCAGAAGAAGGC
TGAGGAGAAGAGACAAGAGGAGGCTCGTCAGGCGGCCGCTGCCCAAAAAG
CGAAGGAGGAGGCGGAAGCGAAAGAGAGGGCGGAGCATGAGGAGGCCATG
CGTCTGGCGGCTCAGAAGGAGAAAGAAGCTTTGGAAGAGAAGGCGCGTGT
CGAGGCACAAAAAGCAAAGGAAGAAGCGGCTCGTCTCGAGGAGGAGAAAC
GCGCTGCAGAGGAGGCAAAGATCCGGGCTCAGCAAGAGGACGAGGCGGCG
GCCAAGCGGAAAGCGGAGGAAGAGGCTGCTGTGCGCAAAGCCCAAGAAAT
AGAGGCAGCGCGCCAAGAGAAAGAGAGGCAGGAGAAAGCTGCTGCAGAAG
CCAAGGCACAAGCAGAGGCAGCAGCCAAAAAGAAGCGGGAGCAGGAGGAG
GCCGAAGCAAAACGAGAGGCAGAGGAAGCTGTGCGAAAAGCGGAGGCAGA
AAGACTGAGTGCACTCAAAGCCGCTGAAGACAAGCGTAAGCAAGAAATAG
CTGCAGCAGAGAGAGAAAAGCAAGCGGGAATTGCCCGAAAGGCAGCTAAA
GAGCGCGCCGCCGTCGTGAGGGCCAAGCGCGAGAAGGAGAACGCGCTAGA
GAAGGAGCGCCAAGAGAAGCTAAAGCGAGCGAAGGCAGCTGCACTGGAGG
CTCGAGCAGAGATTGCAAAGGACTCAGACGAGAAGAAAGCGGTACCACAA
GCAAATATCCGTGCTGCTAGCACTGTCGACCCAAGGGCCGCGCAAGCCCA
ATCCGATGAGCTTCCGGCCCCGACAAAGAAAGACAAGTCCGCTGCAACGG
ACGAAAGCGCCGAGCGTGCATTGCGGGAGGAGAAAGTTCGAGCACGGGCT
CGGGAGCAACAAAAAGATATGTCCAAACGTATGGTGGAGGATTTGACTGT
GAAACTTTCCATTCCAAAGCTGAAGGATTATTTAAAGCAAAACAAGGCTC
AGTCGCCCAAAAGCAGCGCGAAAAAAGCAGATTTTGTGAATGCCGTGCTT
GGAGTGGCAGAAGAAAAGGGGTGGGAAGTCTCCGTGATGGAGCTGCAGAA
TCTTAGCAGCGTTCAGGCTAAGGGTTTCGGCGGAGGCGGTGGACCAGGGG
CAGACTCCAAAAAGAAGAAGAAATAGATTTAGATGACCACGCATGGAGGA
ATACTGAGCCTTGTCCCAGCTAAGCTAACTTTGCACGCCAGAGTGTTTTT
AATCGAGCTTCAAAAGGAAGAAAAGCCAGCATTTTGCAAGACCA

protein sequence of rna2590

>rna2590-protein ID=rna2590-protein|Name=rna2590|organism=Nannochloropsis gaditana|type=polypeptide|length=445bp
MLMLVRLLLVVVACGVLVVSRVLIVQGDTKAKAPSTAGSYTHLPLTFGGL
DTGGSSEEADRRHDLVPGLGSSKVSYRRLRKATRAAAADSDFSYERKSSQ
SDGVTRRLRPFQAVRTTLQSQVRRVRNTLQSTRVSSAVAGLLSRFPPRLQ
RRRTSESRPAGHLSSFAERLLRQLRRQQAHLVQDAEAMLNGDAAASLEGV
DPRYLSLLQSLEEEGHQALGDEGGGWHPVSDKEDTKIWRRNLAEDAYGRE
YPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIV
WNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARS
EIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAE
SLRKALHLERKGPVQEAKAENFQKRRQEEKQDQLQESFDVEAVVA

mRNA from alignment at CM002459.1:741162..743334+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2590 ID=rna2590|Name=rna2590|organism=Nannochloropsis gaditana|type=mRNA|length=2173bp|location=Sequence derived from alignment at CM002459.1:741162..743334+ (Nannochloropsis gaditana)
TCAGGAACTTTTCGAGCCGGCGTTTCGCCTTCCTTGGGATTTACGACCAG
TCGCGGTGAATTGTCCAGCTTTCATGTGCCTACTGAATCACTCTGTTGAT
TAGACTGTGGCATTTGGGCGCCAGCTGAACGCATGCCCACGCCAACGGTA
CCAGGAAAATCGTATTCATAGGAATCGGGTCAGTCATAAGTCCGAGTGGC
TTCGAGATTCAGCCTTGATTCCTCTCCTCAGGGCATGCAAATTGCTTCCT
TCTATAATTTTCGCCAGTGAAGATCACACACATGTACTCTTGAAAAATGT
GTAACCATCTTTGGTGGCCTGATTGACCTACATATCATTACTGAAGttga
tttctttttctcttcatGTTCCGGCGTCTAGGAGGAGAACCTGGAAGGCG
CGTCAGCAAGCAATGCTCATGTTGGTTCGTCTCTTGCTTGTTGTGGTAGC
ATGCGGTGTGCTTGTCGTATCCCGAGTGCTCATCGTGCAAGGAGATACGA
AGGCAAAGGCACCAAGCACGGCGGGTAGCTATACGCATTTGCCTTTGACA
TTTGGTGGGTTGGACACGGGTGGCAGCAGTGAGGAAGCGGATAGACGTCA
CGATCTGGTCCCCGGATTGGGAAGCAGTAAAGTAAGCTATCGTCGGCTTC
GAAAAGCCACTCGAGCAGCGGCCGCGGACTCGGATTTCAGTTACGAGCGA
AAAAGTTCCCAGTCGGATGGTGTCACTCGCCGACTGAGGCCTTTCCAAGC
CGTCCGGACGACGTTACAGTCGCAAGTACGACGCGTCAGGAACACCCTGC
AATCAACCCGGGTCTCGTCTGCGGTGGCGGGACTTCTAagtcgctttcct
ccgcgtCTACAGCGCCGGCGTACGTCTGAGAGTAGGCCTGCGGGACATCT
AAGTTCGTTTGCCGAGCGCTTATTGCGACAACTTCGGCGGCAGCAGGCCC
ACCTGGTCCAGGATGCTGAGGCGATGTTGAATGGTGACGCTGCTGCCTCA
TTGGAAGGAGTGGACCCACGGTACTTATCCCTCCTTCAGTcgctcgagga
agaaggccaTCAGGCGTTGGGAGAtgagggcgggggctggcACCCTGTGT
CGGACAAAGAGGACACGAAAATTTGGAGGCGGAATCTGGCGGAAGACGCG
TATGGGCGGGAGTATCCCTGCCTGAAGTTGTCGACAGTGCTGCACGCCTC
CCCTGAGGCTGTAATGGACCTGCTGGTGGACTCGGAACGCGTGGGCGAGT
ACAACAAGTACAGCAAAGGCCGGGACGACGTGGCGCGTGTCGGGCCCCAC
ACCAAGATAGTCTGGAATAGAACCCTACCCCCGCTGCAGAAGAAGGCGCA
CGAGTTTTGCACGATCATGCACGTCGTTCGGCGCCCTGACGGCTCTCAAG
TGATGCTGACCAAGTTCACAGACCATCCGGAAGTGccgcgctcctcccgc
tttgcGCGCTCCGAGATCATTTTGGGCGTCACAGAAGTACGTCCCCACCC
GACAGACCCTAACCGCGCTCATCTCACCACCATTAGCCACGTTAAGTCGG
CTGGGATTCCGCCTTTCATTGCGGAAAAATTCAGTGTGCGGGGCGTGGTG
GATTTCGCTGAGAGCCTGCGGAAAGCCCTGCATTTAGAGCGGAAAGGCCC
CGtgcaggaggcgaaggcggaaaattttcaaaaacgaaggcaagaggaga
agcaggatcAACTTCAGGAGAGCTTCGATGTAGAGGCGGTGGTAGCCTGA
GAGCGACGAGCCATGTGGAAATAGACGGAGACGGcgggccgagggggggg
gctgcccGAATGTTGTAGAGTGCAGTGGTGGGTGTGCCGTGTTTGACCTC
GCCACACCCAGCCATGGCGAGTGATTCGACAGCATTGACGGGGGCAAAGG
GGCGAGCAGTGCGGGGGCGTTGTCCTTTACTGCCAGACACATAAAAAGTT
TGTTCATATGCATACATGAGAGGACTAAGAGAGGCCAGCGGGGTCTGAAG
GCACATCTTTCCAAGGGGTATCCAAACCTTGAGTGCACTAGGACACAAAG
CAAGGGAAGACCCGCGGCTAAAACGACGACAGCACTGTAATGTAAAGTAT
AAGGATGATTGGGGAGGGGCATCTTCTCCAGTCGATGCCACTTGAAAGAA
CAATGCGAGCTTTTGCCGTACCA

Coding sequence (CDS) from alignment at CM002459.1:741162..743334+

>rna2590 ID=rna2590|Name=rna2590|organism=Nannochloropsis gaditana|type=CDS|length=1338bp|location=Sequence derived from alignment at CM002459.1:741162..743334+ (Nannochloropsis gaditana)
ATGCTCATGTTGGTTCGTCTCTTGCTTGTTGTGGTAGCATGCGGTGTGCT
TGTCGTATCCCGAGTGCTCATCGTGCAAGGAGATACGAAGGCAAAGGCAC
CAAGCACGGCGGGTAGCTATACGCATTTGCCTTTGACATTTGGTGGGTTG
GACACGGGTGGCAGCAGTGAGGAAGCGGATAGACGTCACGATCTGGTCCC
CGGATTGGGAAGCAGTAAAGTAAGCTATCGTCGGCTTCGAAAAGCCACTC
GAGCAGCGGCCGCGGACTCGGATTTCAGTTACGAGCGAAAAAGTTCCCAG
TCGGATGGTGTCACTCGCCGACTGAGGCCTTTCCAAGCCGTCCGGACGAC
GTTACAGTCGCAAGTACGACGCGTCAGGAACACCCTGCAATCAACCCGGG
TCTCGTCTGCGGTGGCGGGACTTCTAagtcgctttcctccgcgtCTACAG
CGCCGGCGTACGTCTGAGAGTAGGCCTGCGGGACATCTAAGTTCGTTTGC
CGAGCGCTTATTGCGACAACTTCGGCGGCAGCAGGCCCACCTGGTCCAGG
ATGCTGAGGCGATGTTGAATGGTGACGCTGCTGCCTCATTGGAAGGAGTG
GACCCACGGTACTTATCCCTCCTTCAGTcgctcgaggaagaaggccaTCA
GGCGTTGGGAGAtgagggcgggggctggcACCCTGTGTCGGACAAAGAGG
ACACGAAAATTTGGAGGCGGAATCTGGCGGAAGACGCGTATGGGCGGGAG
TATCCCTGCCTGAAGTTGTCGACAGTGCTGCACGCCTCCCCTGAGGCTGT
AATGGACCTGCTGGTGGACTCGGAACGCGTGGGCGAGTACAACAAGTACA
GCAAAGGCCGGGACGACGTGGCGCGTGTCGGGCCCCACACCAAGATAGTC
TGGAATAGAACCCTACCCCCGCTGCAGAAGAAGGCGCACGAGTTTTGCAC
GATCATGCACGTCGTTCGGCGCCCTGACGGCTCTCAAGTGATGCTGACCA
AGTTCACAGACCATCCGGAAGTGccgcgctcctcccgctttgcGCGCTCC
GAGATCATTTTGGGCGTCACAGAAGTACGTCCCCACCCGACAGACCCTAA
CCGCGCTCATCTCACCACCATTAGCCACGTTAAGTCGGCTGGGATTCCGC
CTTTCATTGCGGAAAAATTCAGTGTGCGGGGCGTGGTGGATTTCGCTGAG
AGCCTGCGGAAAGCCCTGCATTTAGAGCGGAAAGGCCCCGtgcaggaggc
gaaggcggaaaattttcaaaaacgaaggcaagaggagaagcaggatcAAC
TTCAGGAGAGCTTCGATGTAGAGGCGGTGGTAGCCTGA

Synonyms

Publications