EWM28098.1, cds2582 (CDS) Nannochloropsis gaditana

Overview
NameEWM28098.1
Unique Namecds2582
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:741574..742911 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28098.1
ProductLipid-binding START
Orig transcript idgnl|cribi|Naga_100120g15.6959.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:741574..742911 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
Vocabulary: INTERPRO
TermDefinition
IPR002913START_lipid-bd_dom
IPR023393START-like_dom
Homology
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|585110441|gb|EWM28098.1| (Lipid-binding START [Nannochloropsis gaditana])

HSP 1 Score: 906.36 bits (2341), Expect = 0.000e+0
Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0
Query:    1 MLMLVRLLLVVVACGVLVVSRVLIVQGDTKAKAPSTAGSYTHLPLTFGGLDTGGSSEEADRRHDLVPGLGSSKVSYRRLRKATRAAAADSDFSYERKSSQSDGVTRRLRPFQAVRTTLQSQVRRVRNTLQSTRVSSAVAGLLSRFPPRLQRRRTSESRPAGHLSSFAERLLRQLRRQQAHLVQDAEAMLNGDAAASLEGVDPRYLSLLQSLEEEGHQALGDEGGGWHPVSDKEDTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLRKALHLERKGPVQEAKAENFQKRRQEEKQDQLQESFDVEAVVA 445
            MLMLVRLLLVVVACGVLVVSRVLIVQGDTKAKAPSTAGSYTHLPLTFGGLDTGGSSEEADRRHDLVPGLGSSKVSYRRLRKATRAAAADSDFSYERKSSQSDGVTRRLRPFQAVRTTLQSQVRRVRNTLQSTRVSSAVAGLLSRFPPRLQRRRTSESRPAGHLSSFAERLLRQLRRQQAHLVQDAEAMLNGDAAASLEGVDPRYLSLLQSLEEEGHQALGDEGGGWHPVSDKEDTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLRKALHLERKGPVQEAKAENFQKRRQEEKQDQLQESFDVEAVVA
Sbjct:    1 MLMLVRLLLVVVACGVLVVSRVLIVQGDTKAKAPSTAGSYTHLPLTFGGLDTGGSSEEADRRHDLVPGLGSSKVSYRRLRKATRAAAADSDFSYERKSSQSDGVTRRLRPFQAVRTTLQSQVRRVRNTLQSTRVSSAVAGLLSRFPPRLQRRRTSESRPAGHLSSFAERLLRQLRRQQAHLVQDAEAMLNGDAAASLEGVDPRYLSLLQSLEEEGHQALGDEGGGWHPVSDKEDTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLRKALHLERKGPVQEAKAENFQKRRQEEKQDQLQESFDVEAVVA 445          
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|298706175|emb|CBJ49103.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 167.548 bits (423), Expect = 1.042e-45
Identity = 78/173 (45.09%), Postives = 112/173 (64.74%), Query Frame = 0
Query:  203 RYLSLLQSLEEEGHQALGDEGGGWHPVSDKEDTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHV--VRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTT 373
            +YL+ LQ  +E   +ALG  G  W  V+ +    +W++   +D YG +YPC+K   ++  S   VM ++VDS RV EYN+YSKGR D+  +GPHTKIVWN+  PPL KK H+FCT+MH+  +   +GS +++T+ T+HP+ P      RSEI+LGVT +RP   DP R  +TT
Sbjct:   38 KYLAELQLAQESAERALGTPG--WEEVAHRGGVTVWKKYFPKDEYGYKYPCVKARGIIEGSAAEVMSMIVDSTRVLEYNRYSKGRTDIEHLGPHTKIVWNKAQPPLSKKLHDFCTLMHMQPLDDEEGSFMLITRATEHPKAPLLDGHVRSEILLGVTILRPAKGDPTRTEMTT 208          
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|585104333|gb|EWM23326.1| (lipid transfer protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 129.028 bits (323), Expect = 1.480e-28
Identity = 69/195 (35.38%), Postives = 107/195 (54.87%), Query Frame = 0
Query:  222 EGGGWHPVSDKEDTKIWRRNL-AEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNK-YSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGI-PPFIAEKFSVRGVVDFAESLRKALHLERKGP 413
            E  GW  VSD +   + R+NL + D    +Y C+K S  L ASP+ ++ L  D+ RV EYNK Y++GRD +  +  HTK+VW  + P    K  +FCT++H  +  DG+ V++ +  +HPE PR+ ++ R+EI++G   ++P P  P+ A  T ++ V   G  PP I  K +  G   F   +  A     K P
Sbjct:  440 EADGWELVSDAKGVTVHRKNLPSMDGRVSKYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGRD-LEAINEHTKVVWAASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRGAEHPEAPRTDKYVRAEILMGANIIQPVPGKPHNAVFTIVTQVDPGGFAPPAIVNKVTSWGPPTFFREVEAAARTTHKIP 633          
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|298712865|emb|CBJ33383.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.775 bits (286), Expect = 6.976e-24
Identity = 62/188 (32.98%), Postives = 99/188 (52.66%), Query Frame = 0
Query:  222 EGGGWHPVSDKED--TKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQ-KKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGI-PPFIAEKFSVRGVVDFAESLRKA 405
            E GGW  V    +    + R+ + +++ G ++ C++    +    EA+ +++  SERV EYNK+     D+  +  +TK+VW  +  PL   K  +F T++HV R  DGS +++ +   HPE P S+ + R E+IL    +RP P D NR   T ++ V   GI P +I  K S    VDF E +  A
Sbjct:  346 EEGGWERVVSTRNGALSVERKFIGKNSGGSKFACIRAWCSMDVPAEAIAEMMESSERVKEYNKWFLEGRDLELLDENTKVVWASSPSPLPFVKPRDFVTVVHVRRLEDGSIIVVNRGYKHPEAPPSTEYVRGEVILAANVIRPDPKDRNRTQFTLLTQVDPGGIAPAWIVNKISAHDPVDFLERVETA 533          
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|397627415|gb|EJK68469.1| (hypothetical protein THAOC_10348 [Thalassiosira oceanica])

HSP 1 Score: 106.301 bits (264), Expect = 7.136e-21
Identity = 67/200 (33.50%), Postives = 98/200 (49.00%), Query Frame = 0
Query:  231 DKEDTKIWRRNL-AEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARV--------GPH----TKIVWNRTLPPLQKKAHEFCTIMHVVR-RPDGSQVMLTKFTDHPEVPRS-------------SRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLR 403
            D ++  +W     +   YG E P +K ++++  SP+ + DLL+DS +V  YNK S GRDDV           G H    +KIV N T PP+     EF T MH  R RP  S  +  +   +  V R+              +  R+EI+LGV  ++  P +P R  LT ++HV S  IP  +A+   V+G VDF   +R
Sbjct:  546 DSQEVLVWSGKFKSSQGYGAELPIIKTTSIIDKSPQYLADLLMDSNKVKLYNKMSLGRDDVKVFQSGIDTLEGKHGDGESKIVRNLTKPPMVNGLLEFVTCMHARRLRPSDSSFLGEEAEGYVVVSRAVLGDKYDFASDSGEKLVRNEILLGVNVLKSIPGEPGRTELTAVTHVYSPMIPLMLAKNAGVKGAVDFVRDIR 745          
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|299472189|emb|CBN79692.2| (conserved unknown protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 102.064 bits (253), Expect = 1.186e-19
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 0
Query:  250 EYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAG 381
            ++ C+K S +L   PE V  L  D+ RVGEYN++ +   D+  +   +KI W  +      KA +FCT++H     DG+   ++K  +HP  PR+SR+ RSEI+L    +RP P DP+R     ++HV   G
Sbjct:  400 QFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGG 531          
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|219122403|ref|XP_002181535.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406811|gb|EEC46749.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 98.2117 bits (243), Expect = 1.063e-18
Identity = 67/212 (31.60%), Postives = 108/212 (50.94%), Query Frame = 0
Query:  207 LLQSLEEEGHQ-ALGDEGGGW--HPVSDKE-------DTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDV-ARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSS--RFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLRKA 405
            L+Q L   G Q A  D    W      DK+       D + W      D YG   P +K  +V+  +P  ++DLL+DS RV  YN +S GR+D+      ++KIV NRT PPL  K     T++H  +  DG+ +++++         SS    ++S+I+LGV  + P+    + + LT ++HV S+ +P  +AE+  V+  V F + +R A
Sbjct:  194 LMQDLAVMGEQVARVDTSNTWIAWTCHDKQEMDLAAGDIQTWTGKSKRDGYGSNLPWIKTRSVVPMTPVEMVDLLMDSSRVTTYNPWSIGREDLWVSEDNNSKIVRNRTQPPLGSKVMVATTLLHAQQLDDGAWMLVSRAVGGDVYHDSSDKNASKSDILLGVNLLEPY--SDHSSVLTAVTHVYSSAVPLMLAERLGVKSAVKFVKDIRSA 403          
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|1210526937|dbj|GAX14264.1| (hypothetical protein FisN_1Hu459 [Fistulifera solaris])

HSP 1 Score: 94.3597 bits (233), Expect = 3.957e-18
Identity = 63/191 (32.98%), Postives = 102/191 (53.40%), Query Frame = 0
Query:  231 DKEDTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGP-------HTKIVWNRTLPPLQKKAHEFCTIMHVVRRP---DGSQVMLTK------FTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLRKA 405
            +K D ++W     ++ +G E P +K  ++L   PE V++LL+DSERV  YN++S+GR D   + P        TKIV + T PPL  K     T++H   RP   DG  +++++      + D  +    S  +RS+I+LGV  +   P D     LT+++HV S  IP  +AE+   R  ++FA  +R +
Sbjct:   92 EKGDIQVWTGKAKKEGHGSEVPFIKSRSILPMPPEEVVELLMDSERVKTYNQWSQGRTD-CWIAPAEEGSQKQTKIVKSTTQPPLGAKPVVSVTLLHA--RPWGSDGGWIVVSRSPGGNAYFDADD----SLTSRSDILLGVNLLS--PLDEESCILTSLTHVYSPAIPAMLAERLGARSAINFAIDVRNS 273          
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|551656396|ref|XP_005830971.1| (hypothetical protein GUITHDRAFT_153123 [Guillardia theta CCMP2712] >gi|428175099|gb|EKX43991.1| hypothetical protein GUITHDRAFT_153123 [Guillardia theta CCMP2712])

HSP 1 Score: 90.1225 bits (222), Expect = 5.835e-16
Identity = 70/273 (25.64%), Postives = 121/273 (44.32%), Query Frame = 0
Query:  150 QRRRTSESRPAGHLSSFAERLLRQLRRQQAHLVQDAEAMLNGDAAASLEGVDPRYLSLLQSLEEEGHQALGDEGGGWHPVSDKEDTKIWRRNLAEDAY--GREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAG-----IPPFIAEKFSVRGVVDFAESLRKALHLERKGPVQ 415
            QR +  +      +  F   +LR  R ++A L           +AA +EG +   L  L ++           G GW  V  ++   ++R+ +  D Y  G ++ C+K   V+ A    + +LL DS RV EYN+      D++ +   TK+ W  +      K  +F T +H  +  DG+ V++++  D       + + R+E++L    +RP P DPN+   TTI+H+   G     +   I  +  + G V F   +RK   +  KG  Q
Sbjct:  166 QRLKAWQDTVNVKIEHFRTNVLRAPRSRRAELAA---------SAAEVEGTNKMLLGRLFTVLA---------GDGWEHVLHQDGVDVYRKRIV-DLYQGGEKFYCVKAVGVIDAKAADIYELLKDSARVDEYNEECAQVRDLSALSSDTKVTWAASKTYFPFKPRDFVTRVHNTQLNDGTYVIMSRSEDVDFTDGGADYVRTEVLLAGNVMRPCPDDPNKTEFTTIAHINPGGAADTPLGAQITNRICIHGPVSF---IRKIETVCGKGGAQ 416          
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|219128661|ref|XP_002184526.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403976|gb|EEC43925.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 89.7373 bits (221), Expect = 1.083e-15
Identity = 57/193 (29.53%), Postives = 99/193 (51.30%), Query Frame = 0
Query:  233 EDTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARV------GPH---TKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQV-MLTKFTDHPE---------VPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLRKAL 406
            ED  +W        YG + P ++ ++V++ SP+ ++DLL+DS RV EYNK S GR D+  +      GP    TK++ + + PPL +K  +F +I HV +  D S   ++++    P          +        SEI+LGV  ++     PN+  L T++H++S  +P  IA++  ++   +F   LR+  
Sbjct:  269 EDVLVWSGVFPTGFYGSDLPAVRSASVINMSPQDLVDLLLDSSRVQEYNKLSLGRIDLLTLQATMEDGPFGGITKVMRSESKPPLVRKTLQFTSICHVRKLADDSGYKIVSRAVTMPTAADQQSTSGIGAVGPVMHSEILLGVNILKRIEGAPNQTGLVTVNHIRSPMVPMMIAKRIGLQASYNFVHDLRQCC 461          
The following BLAST results are available for this feature:
BLAST of EWM28098.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110441|gb|EWM28098.1|0.000e+0100.00Lipid-binding START [Nannochloropsis gaditana][more]
gi|298706175|emb|CBJ49103.1|1.042e-4545.09conserved unknown protein [Ectocarpus siliculosus][more]
gi|585104333|gb|EWM23326.1|1.480e-2835.38lipid transfer protein 5 [Nannochloropsis gaditana... [more]
gi|298712865|emb|CBJ33383.1|6.976e-2432.98conserved unknown protein [Ectocarpus siliculosus][more]
gi|397627415|gb|EJK68469.1|7.136e-2133.50hypothetical protein THAOC_10348 [Thalassiosira oc... [more]
gi|299472189|emb|CBN79692.2|1.186e-1936.36conserved unknown protein (Partial), partial [Ecto... [more]
gi|219122403|ref|XP_002181535.1|1.063e-1831.60predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210526937|dbj|GAX14264.1|3.957e-1832.98hypothetical protein FisN_1Hu459 [Fistulifera sola... [more]
gi|551656396|ref|XP_005830971.1|5.835e-1625.64hypothetical protein GUITHDRAFT_153123 [Guillardia... [more]
gi|219128661|ref|XP_002184526.1|1.083e-1529.53predicted protein [Phaeodactylum tricornutum CCAP ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2590rna2590Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications