EWM28098.1, cds2582 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|585110441|gb|EWM28098.1| (Lipid-binding START [Nannochloropsis gaditana]) HSP 1 Score: 906.36 bits (2341), Expect = 0.000e+0 Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0
Query: 1 MLMLVRLLLVVVACGVLVVSRVLIVQGDTKAKAPSTAGSYTHLPLTFGGLDTGGSSEEADRRHDLVPGLGSSKVSYRRLRKATRAAAADSDFSYERKSSQSDGVTRRLRPFQAVRTTLQSQVRRVRNTLQSTRVSSAVAGLLSRFPPRLQRRRTSESRPAGHLSSFAERLLRQLRRQQAHLVQDAEAMLNGDAAASLEGVDPRYLSLLQSLEEEGHQALGDEGGGWHPVSDKEDTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLRKALHLERKGPVQEAKAENFQKRRQEEKQDQLQESFDVEAVVA 445
MLMLVRLLLVVVACGVLVVSRVLIVQGDTKAKAPSTAGSYTHLPLTFGGLDTGGSSEEADRRHDLVPGLGSSKVSYRRLRKATRAAAADSDFSYERKSSQSDGVTRRLRPFQAVRTTLQSQVRRVRNTLQSTRVSSAVAGLLSRFPPRLQRRRTSESRPAGHLSSFAERLLRQLRRQQAHLVQDAEAMLNGDAAASLEGVDPRYLSLLQSLEEEGHQALGDEGGGWHPVSDKEDTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLRKALHLERKGPVQEAKAENFQKRRQEEKQDQLQESFDVEAVVA
Sbjct: 1 MLMLVRLLLVVVACGVLVVSRVLIVQGDTKAKAPSTAGSYTHLPLTFGGLDTGGSSEEADRRHDLVPGLGSSKVSYRRLRKATRAAAADSDFSYERKSSQSDGVTRRLRPFQAVRTTLQSQVRRVRNTLQSTRVSSAVAGLLSRFPPRLQRRRTSESRPAGHLSSFAERLLRQLRRQQAHLVQDAEAMLNGDAAASLEGVDPRYLSLLQSLEEEGHQALGDEGGGWHPVSDKEDTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLRKALHLERKGPVQEAKAENFQKRRQEEKQDQLQESFDVEAVVA 445
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|298706175|emb|CBJ49103.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 167.548 bits (423), Expect = 1.042e-45 Identity = 78/173 (45.09%), Postives = 112/173 (64.74%), Query Frame = 0
Query: 203 RYLSLLQSLEEEGHQALGDEGGGWHPVSDKEDTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHV--VRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTT 373
+YL+ LQ +E +ALG G W V+ + +W++ +D YG +YPC+K ++ S VM ++VDS RV EYN+YSKGR D+ +GPHTKIVWN+ PPL KK H+FCT+MH+ + +GS +++T+ T+HP+ P RSEI+LGVT +RP DP R +TT
Sbjct: 38 KYLAELQLAQESAERALGTPG--WEEVAHRGGVTVWKKYFPKDEYGYKYPCVKARGIIEGSAAEVMSMIVDSTRVLEYNRYSKGRTDIEHLGPHTKIVWNKAQPPLSKKLHDFCTLMHMQPLDDEEGSFMLITRATEHPKAPLLDGHVRSEILLGVTILRPAKGDPTRTEMTT 208
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|585104333|gb|EWM23326.1| (lipid transfer protein 5 [Nannochloropsis gaditana]) HSP 1 Score: 129.028 bits (323), Expect = 1.480e-28 Identity = 69/195 (35.38%), Postives = 107/195 (54.87%), Query Frame = 0
Query: 222 EGGGWHPVSDKEDTKIWRRNL-AEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNK-YSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGI-PPFIAEKFSVRGVVDFAESLRKALHLERKGP 413
E GW VSD + + R+NL + D +Y C+K S L ASP+ ++ L D+ RV EYNK Y++GRD + + HTK+VW + P K +FCT++H + DG+ V++ + +HPE PR+ ++ R+EI++G ++P P P+ A T ++ V G PP I K + G F + A K P
Sbjct: 440 EADGWELVSDAKGVTVHRKNLPSMDGRVSKYCCIKASGTLAASPDDILSLFADNTRVPEYNKFYAEGRD-LEAINEHTKVVWAASPPMFFFKPRDFCTVVHYRKLQDGTVVVVNRGAEHPEAPRTDKYVRAEILMGANIIQPVPGKPHNAVFTIVTQVDPGGFAPPAIVNKVTSWGPPTFFREVEAAARTTHKIP 633
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|298712865|emb|CBJ33383.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 114.775 bits (286), Expect = 6.976e-24 Identity = 62/188 (32.98%), Postives = 99/188 (52.66%), Query Frame = 0
Query: 222 EGGGWHPVSDKED--TKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQ-KKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGI-PPFIAEKFSVRGVVDFAESLRKA 405
E GGW V + + R+ + +++ G ++ C++ + EA+ +++ SERV EYNK+ D+ + +TK+VW + PL K +F T++HV R DGS +++ + HPE P S+ + R E+IL +RP P D NR T ++ V GI P +I K S VDF E + A
Sbjct: 346 EEGGWERVVSTRNGALSVERKFIGKNSGGSKFACIRAWCSMDVPAEAIAEMMESSERVKEYNKWFLEGRDLELLDENTKVVWASSPSPLPFVKPRDFVTVVHVRRLEDGSIIVVNRGYKHPEAPPSTEYVRGEVILAANVIRPDPKDRNRTQFTLLTQVDPGGIAPAWIVNKISAHDPVDFLERVETA 533
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|397627415|gb|EJK68469.1| (hypothetical protein THAOC_10348 [Thalassiosira oceanica]) HSP 1 Score: 106.301 bits (264), Expect = 7.136e-21 Identity = 67/200 (33.50%), Postives = 98/200 (49.00%), Query Frame = 0
Query: 231 DKEDTKIWRRNL-AEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARV--------GPH----TKIVWNRTLPPLQKKAHEFCTIMHVVR-RPDGSQVMLTKFTDHPEVPRS-------------SRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLR 403
D ++ +W + YG E P +K ++++ SP+ + DLL+DS +V YNK S GRDDV G H +KIV N T PP+ EF T MH R RP S + + + V R+ + R+EI+LGV ++ P +P R LT ++HV S IP +A+ V+G VDF +R
Sbjct: 546 DSQEVLVWSGKFKSSQGYGAELPIIKTTSIIDKSPQYLADLLMDSNKVKLYNKMSLGRDDVKVFQSGIDTLEGKHGDGESKIVRNLTKPPMVNGLLEFVTCMHARRLRPSDSSFLGEEAEGYVVVSRAVLGDKYDFASDSGEKLVRNEILLGVNVLKSIPGEPGRTELTAVTHVYSPMIPLMLAKNAGVKGAVDFVRDIR 745
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|299472189|emb|CBN79692.2| (conserved unknown protein (Partial), partial [Ectocarpus siliculosus]) HSP 1 Score: 102.064 bits (253), Expect = 1.186e-19 Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 0
Query: 250 EYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAG 381
++ C+K S +L PE V L D+ RVGEYN++ + D+ + +KI W + KA +FCT++H DG+ ++K +HP PR+SR+ RSEI+L +RP P DP+R ++HV G
Sbjct: 400 QFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGG 531
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|219122403|ref|XP_002181535.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406811|gb|EEC46749.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 98.2117 bits (243), Expect = 1.063e-18 Identity = 67/212 (31.60%), Postives = 108/212 (50.94%), Query Frame = 0
Query: 207 LLQSLEEEGHQ-ALGDEGGGW--HPVSDKE-------DTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDV-ARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSS--RFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLRKA 405
L+Q L G Q A D W DK+ D + W D YG P +K +V+ +P ++DLL+DS RV YN +S GR+D+ ++KIV NRT PPL K T++H + DG+ +++++ SS ++S+I+LGV + P+ + + LT ++HV S+ +P +AE+ V+ V F + +R A
Sbjct: 194 LMQDLAVMGEQVARVDTSNTWIAWTCHDKQEMDLAAGDIQTWTGKSKRDGYGSNLPWIKTRSVVPMTPVEMVDLLMDSSRVTTYNPWSIGREDLWVSEDNNSKIVRNRTQPPLGSKVMVATTLLHAQQLDDGAWMLVSRAVGGDVYHDSSDKNASKSDILLGVNLLEPY--SDHSSVLTAVTHVYSSAVPLMLAERLGVKSAVKFVKDIRSA 403
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|1210526937|dbj|GAX14264.1| (hypothetical protein FisN_1Hu459 [Fistulifera solaris]) HSP 1 Score: 94.3597 bits (233), Expect = 3.957e-18 Identity = 63/191 (32.98%), Postives = 102/191 (53.40%), Query Frame = 0
Query: 231 DKEDTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGP-------HTKIVWNRTLPPLQKKAHEFCTIMHVVRRP---DGSQVMLTK------FTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLRKA 405
+K D ++W ++ +G E P +K ++L PE V++LL+DSERV YN++S+GR D + P TKIV + T PPL K T++H RP DG +++++ + D + S +RS+I+LGV + P D LT+++HV S IP +AE+ R ++FA +R +
Sbjct: 92 EKGDIQVWTGKAKKEGHGSEVPFIKSRSILPMPPEEVVELLMDSERVKTYNQWSQGRTD-CWIAPAEEGSQKQTKIVKSTTQPPLGAKPVVSVTLLHA--RPWGSDGGWIVVSRSPGGNAYFDADD----SLTSRSDILLGVNLLS--PLDEESCILTSLTHVYSPAIPAMLAERLGARSAINFAIDVRNS 273
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|551656396|ref|XP_005830971.1| (hypothetical protein GUITHDRAFT_153123 [Guillardia theta CCMP2712] >gi|428175099|gb|EKX43991.1| hypothetical protein GUITHDRAFT_153123 [Guillardia theta CCMP2712]) HSP 1 Score: 90.1225 bits (222), Expect = 5.835e-16 Identity = 70/273 (25.64%), Postives = 121/273 (44.32%), Query Frame = 0
Query: 150 QRRRTSESRPAGHLSSFAERLLRQLRRQQAHLVQDAEAMLNGDAAASLEGVDPRYLSLLQSLEEEGHQALGDEGGGWHPVSDKEDTKIWRRNLAEDAY--GREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAG-----IPPFIAEKFSVRGVVDFAESLRKALHLERKGPVQ 415
QR + + + F +LR R ++A L +AA +EG + L L ++ G GW V ++ ++R+ + D Y G ++ C+K V+ A + +LL DS RV EYN+ D++ + TK+ W + K +F T +H + DG+ V++++ D + + R+E++L +RP P DPN+ TTI+H+ G + I + + G V F +RK + KG Q
Sbjct: 166 QRLKAWQDTVNVKIEHFRTNVLRAPRSRRAELAA---------SAAEVEGTNKMLLGRLFTVLA---------GDGWEHVLHQDGVDVYRKRIV-DLYQGGEKFYCVKAVGVIDAKAADIYELLKDSARVDEYNEECAQVRDLSALSSDTKVTWAASKTYFPFKPRDFVTRVHNTQLNDGTYVIMSRSEDVDFTDGGADYVRTEVLLAGNVMRPCPDDPNKTEFTTIAHINPGGAADTPLGAQITNRICIHGPVSF---IRKIETVCGKGGAQ 416
BLAST of EWM28098.1 vs. NCBI_GenBank
Match: gi|219128661|ref|XP_002184526.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403976|gb|EEC43925.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 89.7373 bits (221), Expect = 1.083e-15 Identity = 57/193 (29.53%), Postives = 99/193 (51.30%), Query Frame = 0
Query: 233 EDTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARV------GPH---TKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQV-MLTKFTDHPE---------VPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLRKAL 406
ED +W YG + P ++ ++V++ SP+ ++DLL+DS RV EYNK S GR D+ + GP TK++ + + PPL +K +F +I HV + D S ++++ P + SEI+LGV ++ PN+ L T++H++S +P IA++ ++ +F LR+
Sbjct: 269 EDVLVWSGVFPTGFYGSDLPAVRSASVINMSPQDLVDLLLDSSRVQEYNKLSLGRIDLLTLQATMEDGPFGGITKVMRSESKPPLVRKTLQFTSICHVRKLADDSGYKIVSRAVTMPTAADQQSTSGIGAVGPVMHSEILLGVNILKRIEGAPNQTGLVTVNHIRSPMVPMMIAKRIGLQASYNFVHDLRQCC 461 The following BLAST results are available for this feature:
BLAST of EWM28098.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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