rna259, rna259 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna259
Unique Name	rna259
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1117
Alignment location	CM002455.1:652729..654686 +

Link to JBrowse

Properties


Property Name	Value
Product	pyrroline-5-carboxylate reductase
Orig transcript id	gnl\|cribi\|Naga_100026g57.10663.mrna
Orig protein id	gnl\|cribi\|Naga_100026g57.10663
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:652729..654686 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g57	gene248	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna259	rna259-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30409.1	cds259	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:652729..654686+
coding sequence from alignment at CM002455.1:652729..654686+

mRNA sequence

>rna259 ID=rna259|Name=rna259|organism=Nannochloropsis gaditana|type=mRNA|length=1117bp
ATCTTGCGGCTCAACTCGTTCCACAATCTCAATCACGTTTCACACCTCGT
CTCTGGACAGGACTGCCTACATCCGACCAATCGCGTTGGAAGCAGCACCA
GCTGTCTGGAAAGCTTAGCTTGACATCGCCTGACCGCTTTAGCCGTGTCG
GGCCCCAATCCAGTGACGTTTACTTCCCCCCGTGTCGTTCGTCTAGTGTA
CTCTCAGTCATCCTGCGTCATTGGTCTGGTGCCAAAGCACGTGTTTGGTA
TGCTACCATCAAGTGTAGGCAGAAGTAGCCGACGTGGTATTTCATCCGGT
GCTTGGTTGAAAGCCACAAAAGTAAGACCGCAAGTATTGTCTCCGCGTAA
CCAGCCTCCCTCATTACGCGCACAAGGGATCTACAGACGTTCATGGTCGA
TCTACAGACATGATTTCCGTCAACTCAGCTCCAACGCTGTCAGCAATTCT
CCTCAAATGTCTCTGGATGAAGACGTAGTGGTGACCAATGCCTGCATCAA
GCGCATCAAGGCATTGCAGGTCAAGACGGGGAAGGAGAATCTGAAGCTGC
GACTCTCGGTCGAGGGGGGTGGGTGCTCGGGTTTCACCTACACATTTACC
ATGGAAGATGGACCGGTGGAGGATGACGACAAAGTGTACGGGAGGGAAGG
GGCCCAGGTTGTGGTGGATGAAGGCTCGTTGGAGTTTGTTCGCGGATCGA
CAGTGGATTTTACTGAGGATATGATGCGTAGCGCGTTTGCCGTCGTCAGC
AACCCTCTGTCAGAATCAGCTTGTGGGTGCGGAAGTTCATTCGCGATGAA
AAATTTTGAAAAGAACCCGGCAATTGATTGAGGAGCGCTTGCGCCCTCGT
GTCACTTTGAGACAAGTTGGGGCCGAGGTGGTGTACATGACTCCAGGTGT
AGGGTCAGCGAGCAAACGAAAATGTTCGTGGAAATGAAAATAAAAGGCGT
GAGAGCCAAGCTCAGCATAGACGTCTGACTCTGCCCGCGCCGATCGCGGT
CAGTGTCGCTTTATTCCATGTTACAGATATACACGTTTTTTCAGCAAGCC
CATCCATCACCTGTACACATATCCTTAACTTAACTCGGTCGGTTTTTTTA
AGGGCGAATCCGTCATG

protein sequence of rna259

>rna259-protein ID=rna259-protein|Name=rna259|organism=Nannochloropsis gaditana|type=polypeptide|length=351bp
MLPTRLAGIAARRAFLMQRHIPSNANTTAMSATVRWIHRSQAALSHDDSK
PDPVANAEGFDFNRIGLVGGGKMSEAIIEGFVTEKLIQPEKISVYDVSRK
RLDYLMKTFGVQASSSLAAACKDSDLVIIAVKPQNLTQKLWTQLRANLDP
KSVVLSIVAGIPMSNFVESTGNKRVVRTMPNTPATIQQGMTVWACTDHVS
VSQRNSVAKFLSSLGEQHFVHDEQYLDMATAVSGSGPGYVLLILEALIDA
AVHLGFARNVASKLVLQTVSGTTTLAMKSGLHPAILRNSVTSPGGTTASA
LYVLEQGRFRTVLADSFWSAYRRSLELGHMDSNVGPGRSRHDAHETDSHK
K

mRNA from alignment at CM002455.1:652729..654686+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna259 ID=rna259|Name=rna259|organism=Nannochloropsis gaditana|type=mRNA|length=1958bp|location=Sequence derived from alignment at CM002455.1:652729..654686+ (Nannochloropsis gaditana)
CGACTTCCTGCTCGCCGagtcttcctcgcctgtTCCAGTCGCTGCTTGCT
CGACCTCCTCAGCTACACTTCCTTCAAGCCCCGAGACCCACTGCAAACAT
TTCATGCGCTATTCTAGCAGCCACGATCACCTTTATGCCCTCTCAAACTA
TCAATGGCAACTCGTTGAACTGTTATCCGCAGTTTTAAAACGAAAGCAGG
CCTATTTGCCCTTCGCTCCCATAGCCGGAGGATTATGTTGCCAACACGTC
TCGCCGGCATAGCGGCCCGCCGCGCTTTTTTAATGCAGCGACATATCCCA
AGCAATGCAAATACAACGGCTATGAGCGCTACGGTGCGATGGATTCATCG
TAGCCAGGCTGCTTTAAGTCATGACGACAGCAAGCCCGACCCCGTGGCCA
ACGCGGAGGGCTTTGACTTCAATCGCATTGGTctcgtggggggggggaag
atgagcGAGGCTATAATTGAAGGATTCGTTACAGAAAAGCTTATTCAGCC
GGAAAAGATTTCGGTGTATGATGTGAGCCGCAAGCGGCTTGATTACTTGA
TGAAAACATTCGGCGTGcaggcttcttcctccttggctgcTGCCTGCAAA
GACTCGGACCTGGTAATCATCGCCGTCAAGCCGCAAAATTTGACGCAGAA
GCTGTGGACGCAATTGCGTGCCAATCTTGACCCGAAGTCGGTTGTTCTCA
GCATCGTAGCGGGTAAGGAGCATCGATGCGCAGACAGGAAatgatatata
tatatatatacacaGTTTATATGACCTCATCGAAACAGTGGAATGACCCT
TGGAGTGCATCGAGAAGTGCGCAATGCAAGATGCAAATATTAGCTTCATG
TGTCATCATTTTTCCTCGCGTCGACCGCAGGTATTCCAATGTCAAACTTC
GTGGAGAGCACGGGGAACAAGCGCGTGGTGCGGACCATGCCCAACACCCC
GGCCACCATCCAGCAGGGAATGACCGTGTGGGCCTGCACTGATCACGTGA
GCGTGTCCCAGCGGAATTCCGTGGCCAagtttctctcctccctgggcGAG
CAGCACTTCGTTCACGATGAACAGTACCTGGACATGGCGACGGCGGTCTC
AGGCTCGGGCCCGGGCTACGTGTTGTTGATCCTGGAGGCACTTATCGACG
CTGGTGCgtgcggaggggagggggctgggTGTGCGGGTGGATGTGCGGGG
TGTTGGCTCGTTGCCGTATCTGGGAGACGGACTCCTCCGAGGGAGCACGG
GACCCTCCTCACCGTCATCCGTCGCTTCTTTCTCGACTTTCCGTACAGCG
GTGCACCTTGGATTTGCCCGCAACGTGGCCTCCAAGCTGGTTCTTCAAAC
TGTGTCGGGCACGACGACACTCGCCATGAAGAGTGGCCTGCATCCGGCTA
TCCTCAGGAACAGCGTCACGAGCCCGGGGGGCACTACTGCCTCCGCTTTG
TACGTGCTGGAGCAGGGGCGGTTTCGAACGGTGCTGGCGGATTCCTTCTG
GAGTGCGTACCGGCGATCGTTGGAATTGGGTCACATGGACAGCAATGTAG
GACCGGGTAGGAGTAGGCACGACGCGCACGAAACCGACAGTCATAAGAAG
TAAAAGGAGCTTGGAAAGGGCGTGGGCAGAGCGCGAGGAAGCATGGCGGG
TGCGGAGACTGAGCGGGAACGAAGTTTCCGGGAGCGTGCGCACATGACAT
TGCGGTGACATTCACGAGGTCAATTTAAATGTGGCGATGAGGATggcagg
agcaggcgcgCAGAGTGACTCCCATAACATAAAATCGGGCGAAATGTGGC
GATTTTTTTCGGCTCTGGTGCAAAGTAAAATTATATAGGGTACTAGTTAT
AGTCGAGACTTTTGCGTTCATGCTCTCATGTGCACTTGCGTTAGTTGCGT
CGGACTCTTCGGATATGTAACAGTTAGATTTGAATAAAAGGTTTAAAAGT
GGCagctg

Coding sequence (CDS) from alignment at CM002455.1:652729..654686+

>rna259 ID=rna259|Name=rna259|organism=Nannochloropsis gaditana|type=CDS|length=3168bp|location=Sequence derived from alignment at CM002455.1:652729..654686+ (Nannochloropsis gaditana)
ATGTTGCCAACACGTCTCGCCGGCATAGCGGCCCGCCGCGCTTTTTTAAT
GCAGCGACATATCCCAAGCAATGCAAATACAACGGCTATGAGCGCTACGG
TGCGATGGATTCATCGTAGCCAGGCTGCTTTAAGTCATGACGACAGCAAG
CCCGACCCCGTGGCCAACGCGGAGGGCTTTGACTTCAATCGCATTGGTct
cgtggggggggggaagatgagcGAGGCTATAATTGAAGGATTCGTTACAG
AAAAGCTTATTCAGCCGGAAAAGATTTCGGTGTATGATGTGAGCCGCAAG
CGGCTTGATTACTTGATGAAAACATTCGGCGTGcaggcttcttcctcctt
ggctgcTGCCTGCAAAGACTCGGACCTGGTAATCATCGCCGTCAAGCCGC
AAAATTTGACGCAGAAGCTGTGGACGCAATTGCGTGCCAATCTTGACCCG
AAGTCGGTTGTTCTCAGCATCGTAGCGGGTATTCCAATGTCAAACTTCGT
GGAGAGCACGGGGAACAAGCGCGTGGTGCGGACCATGCCCAACACCCCGG
CCACCATCCAGCAGGGAATGACCGTGTGGGCCTGCACTGATCACGTGAGC
GTGTCCCAGCGGAATTCCGTGGCCAagtttctctcctccctgggcGAGCA
GCACTTCGTTCACGATGAACAGTACCTGGACATGGCGACGGCGGTCTCAG
GCTCGGGCCCGGGCTACGTGTTGTTGATCCTGGAGGCACTTATCGACGCT
GCGGTGCACCTTGGATTTGCCCGCAACGTGGCCTCCAAGCTGGTTCTTCA
AACTGTGTCGGGCACGACGACACTCGCCATGAAGAGTGGCCTGCATCCGG
CTATCCTCAGGAACAGCGTCACGAGCCCGGGGGGCACTACTGCCTCCGCT
TTGTACGTGCTGGAGCAGGGGCGGTTTCGAACGGTGCTGGCGGATTCCTT
CTGGAGTGCGTACCGGCGATCGTTGGAATTGGGTCACATGGACAGCAATG
TAGGACCGGGTAGGAGTAGGCACGACGCGCACGAAACCGACAGTCATAAG
AAGTAAATGTTGCCAACACGTCTCGCCGGCATAGCGGCCCGCCGCGCTTT
TTTAATGCAGCGACATATCCCAAGCAATGCAAATACAACGGCTATGAGCG
CTACGGTGCGATGGATTCATCGTAGCCAGGCTGCTTTAAGTCATGACGAC
AGCAAGCCCGACCCCGTGGCCAACGCGGAGGGCTTTGACTTCAATCGCAT
TGGTctcgtggggggggggaagatgagcGAGGCTATAATTGAAGGATTCG
TTACAGAAAAGCTTATTCAGCCGGAAAAGATTTCGGTGTATGATGTGAGC
CGCAAGCGGCTTGATTACTTGATGAAAACATTCGGCGTGcaggcttcttc
ctccttggctgcTGCCTGCAAAGACTCGGACCTGGTAATCATCGCCGTCA
AGCCGCAAAATTTGACGCAGAAGCTGTGGACGCAATTGCGTGCCAATCTT
GACCCGAAGTCGGTTGTTCTCAGCATCGTAGCGGGTATTCCAATGTCAAA
CTTCGTGGAGAGCACGGGGAACAAGCGCGTGGTGCGGACCATGCCCAACA
CCCCGGCCACCATCCAGCAGGGAATGACCGTGTGGGCCTGCACTGATCAC
GTGAGCGTGTCCCAGCGGAATTCCGTGGCCAagtttctctcctccctggg
cGAGCAGCACTTCGTTCACGATGAACAGTACCTGGACATGGCGACGGCGG
TCTCAGGCTCGGGCCCGGGCTACGTGTTGTTGATCCTGGAGGCACTTATC
GACGCTGCGGTGCACCTTGGATTTGCCCGCAACGTGGCCTCCAAGCTGGT
TCTTCAAACTGTGTCGGGCACGACGACACTCGCCATGAAGAGTGGCCTGC
ATCCGGCTATCCTCAGGAACAGCGTCACGAGCCCGGGGGGCACTACTGCC
TCCGCTTTGTACGTGCTGGAGCAGGGGCGGTTTCGAACGGTGCTGGCGGA
TTCCTTCTGGAGTGCGTACCGGCGATCGTTGGAATTGGGTCACATGGACA
GCAATGTAGGACCGGGTAGGAGTAGGCACGACGCGCACGAAACCGACAGT
CATAAGAAGTAAATGTTGCCAACACGTCTCGCCGGCATAGCGGCCCGCCG
CGCTTTTTTAATGCAGCGACATATCCCAAGCAATGCAAATACAACGGCTA
TGAGCGCTACGGTGCGATGGATTCATCGTAGCCAGGCTGCTTTAAGTCAT
GACGACAGCAAGCCCGACCCCGTGGCCAACGCGGAGGGCTTTGACTTCAA
TCGCATTGGTctcgtggggggggggaagatgagcGAGGCTATAATTGAAG
GATTCGTTACAGAAAAGCTTATTCAGCCGGAAAAGATTTCGGTGTATGAT
GTGAGCCGCAAGCGGCTTGATTACTTGATGAAAACATTCGGCGTGcaggc
ttcttcctccttggctgcTGCCTGCAAAGACTCGGACCTGGTAATCATCG
CCGTCAAGCCGCAAAATTTGACGCAGAAGCTGTGGACGCAATTGCGTGCC
AATCTTGACCCGAAGTCGGTTGTTCTCAGCATCGTAGCGGGTATTCCAAT
GTCAAACTTCGTGGAGAGCACGGGGAACAAGCGCGTGGTGCGGACCATGC
CCAACACCCCGGCCACCATCCAGCAGGGAATGACCGTGTGGGCCTGCACT
GATCACGTGAGCGTGTCCCAGCGGAATTCCGTGGCCAagtttctctcctc
cctgggcGAGCAGCACTTCGTTCACGATGAACAGTACCTGGACATGGCGA
CGGCGGTCTCAGGCTCGGGCCCGGGCTACGTGTTGTTGATCCTGGAGGCA
CTTATCGACGCTGCGGTGCACCTTGGATTTGCCCGCAACGTGGCCTCCAA
GCTGGTTCTTCAAACTGTGTCGGGCACGACGACACTCGCCATGAAGAGTG
GCCTGCATCCGGCTATCCTCAGGAACAGCGTCACGAGCCCGGGGGGCACT
ACTGCCTCCGCTTTGTACGTGCTGGAGCAGGGGCGGTTTCGAACGGTGCT
GGCGGATTCCTTCTGGAGTGCGTACCGGCGATCGTTGGAATTGGGTCACA
TGGACAGCAATGTAGGACCGGGTAGGAGTAGGCACGACGCGCACGAAACC
GACAGTCATAAGAAGTAA

Synonyms

Publications