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Properties
| Property Name | Value |
|---|
| Product | small nuclear ribonucleoprotein f |
| Orig transcript id | gnl|cribi|Naga_100120g20.6952.mrna |
| Orig protein id | gnl|cribi|Naga_100120g20.6952 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:731312..732315 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2585 ID=rna2585|Name=rna2585|organism=Nannochloropsis gaditana|type=mRNA|length=7219bp
ACACTCACCGCACAATCATCACCTTGTCCAAGAAGACAGGCAGGAAGATA
CACCTGCCCACATCATGGCAGCCTGATCCTTTTCAAGCGCGGCGGGATTC
GTCGCACCCCTGGCATGGCCGCTCTTCCTCCATCGTCTTCTACCCCCCGA
GCGTCTCATGCCACTCCACTGTTTCCGCTTGACGAGGACCTACCCGTAGA
CGAAATGATAGCTATGTGCGAGCTTGCAGAGGCTGCTGCTGCTGCCGCCA
CTGACGGCGCTGAATGCCTGAGACATTCTCGCCGTGTTTCTGAGGCAGCT
CGAGACATGGCTGGAGGAGATCCGGGTACGGCTGCTTCTCCTCCCACCTC
TACATCTGCTCTCGACAATTCCCTCCCTGCTCAGAAGGTGCTTGCAGAAA
TAAGAGCACACGCACGTATCTCTATCGAGGCACTCTTTGAAAATGTGCTC
GAGTTGCCAGTGGAAATGGCCCTCGCCTACCGGCGGCGCGGCATCGTCCG
GCCATATGACTGGCAATGTCAGTGCCTACAGACACCTGGGGTTGTGACTG
GAGAAAGAAATCTATTGTACAGCGCCCCCACGTCCGGCGGTAAATCGTTC
GTTGCCGATGTCTTACTTCTTCGACGCGCCATCCATACAAGAAAAAAAGT
GTTGTTAGTGCTTCCTTTTGTGGCTGTCGTTCGTGAGAAAGTGGCTCACT
TCAAAAGTTTGGTGAGTGTGTATAATGCGCGAAAACGCAGGCGCGAGGCA
TTGCGCATTCAAGCATTCCACGGCAACAAGGGCGGGCGAGGTTTCGGCCG
CTGTCAGATCGGGATTTGCACAATCGAGAAGGCAAATGCACTGGTGAACA
AAATGATTCAGGAGGGCTCAATCAATCAGCTGTCCTGCCTCGTCGTGGAC
GAGCTGCACATGATGGCCGATCAGCAGCGCGGGTATCTTTTAGAACTTCT
TTTAAGCAAGCTGAAATTCATTAAGGCGCTCCAACACTGCCGACGAGGCC
CATCCGACTTGACCACCGACGCCGCAATCGACAATCAAGGCCCCCCGCTG
GACGTGCAAATTATTGGCCTCAGCGCCACCCTACCGAATCTGGAAGAAGT
CGCGGACTGGATGGATGCCGCACTCTTCCATACCTCTTTCCGCCCGGTCG
AGCTTCAGGAGATGTACAAGTGGGGAGATGCTCTCTTTGCGGCGGACGGG
GTCTGTCTGCGTCGACTGCAGTCTCGGCGTCCTCCAGCGGAAGATCCGGA
CCATATCACGACATTGGTGGAGGAGACTACAAGGAGGGGACATCAGGTCT
TGGTGTTCTGTCACTACCGTAAACACTGTGAAAACTGTGCGACTCTTCTG
GCGGAGCAACTTGGTGTTTTGCCCGGTGCTATCATGGCAAATGCGATGAC
GAGGCAAAAGAAAGAGGACAAAGAAAGTGACGATACTGTCAAGATGCGGA
AAGCTCTTTTAGATGACCTTCGCGAACACTCCATGAGTGTTCATCCCTGC
TTGTTGCTCGCCATACCGAAAGGCATCGCATTTCATCACGCGGGCTTGAC
CGATCACGAAAAGAATGCCCTGGAGGAGGCCTTCCGTCGAGGAGTGCTTT
CTGTCATTGTCGCAACCTCTACACTCGGGACAGGAATCAATCTGCCTGCA
GCCAGGGTAATCTTTAGGACCCTCCGTCCAGGGGGAAATCGAGTTTTTGA
TATCTCATCATACCGGCAAATGGCTGGGCGAGCGGGCCGCGCGGGACAGC
AAAAATACGGGGAGTCCATTTTACTGGCAAGGTCTCCCCAAGATGTCAAA
GAGGCAACACGTCTGATGACTGAGCCCTTGCACGACCTACATAGTTGTCT
CGACCCGGAACAAGATGGAGGACGGGCTCTGGTCAGGGCGATATTAGAAG
CGATTGCCTCCGGCTCATTGCAAAAAAATGATGATCTAGACATTTTTTTG
CATTGCACGTTGGCACTGCGACAGCGCATCCGGCATTCTCCGCGATTGAA
TTCATTTCTCTATTATGCTCGTGATGCTTTGCGGTATTTGGTCGAGCACC
GCATCGTGAAGCAGCTTCCTGGGCCATCCGTAAACGCCGAAGTCTCGACC
AGCCAGCGAGCGGAGCACACGCCTGAGCAGAAAGAGCAAACTGTCATGTC
AACTGCAGCACCACCTGTTCCTGACATTGGCTCCACTGTGTCAACGCTTT
TGTCCCCAAGCAAGCTTGGTCATGCGCTTTTCAAGAGTTCGTTTGCTCCG
GATGAGGGATTGCTCGTGTTTCAAGACCTCAAGCATGCCCAACAGCGTCT
GGTCCTCGACGGTAACCTCCATCTGATTTACCTTGTCACGCCCGTCTTTC
ATCCCTTGCTACCTGACTACAATCAGCTTTGGAAAATTTACGACCGGGCA
CGACGGACTGATCCCGTCAAGGCTTTGATATTCGAGTTAATTGGCTTCTC
TGAAGCGCTTTTGGATCGTTGGAGCCACCAGCAACCAGCTTCAGGCGTCT
TAATAGGGCCCCTGCTGCATCTTGGGTCCTCTGAGGCTGGGAACCATACT
GCGCGCGGGCTGGCTCAACCTATTGGTCGTAGCATTCGCATGGCCACTGG
TGTCGTGGAAGGAGAGCAGCTGATGATTATGCGCGCCCGGCGACTATGGG
GGGCGCTAGCGCTCCATGATCTGGCTGTGGCAGAGCGACCTTTGGACGCC
ACGGCGGCCACGTACGGGGTCGATCGAGGCAGCCTGCAAGCGTTGCAGCA
ATCTGCGGCAAGCTACGTGGGAATGATCCAGTCGTTTTTGACCCAGTTGG
GATGGACTTTGCTATCGCGAGCTTTGGAGGAGGCAGGGACGGCCGTCGGC
GGCGAACAAGTCAAGGAGCTAATGCCACTCATGCAGATCCCACGGTTGGA
ACTGTCGTTGGCACGCGCACTCTATGACACTGACGTGCGAACAGTCGCAG
CCGTTTGTTCAGAGCCGGTCGAGCACCTCGCAGACATCATCCGCAAGATT
CGTCCTTTTTCAGCTGAGAAAAGAGGCGACGGTGTTGCGGTTCCCGGTTT
GGAATCCGACGAGATGGCGTGTTACGATGAGGCTGCTCGTCGGCTGCGAG
AGGCTGCACATTTTGTGCTCAAGAAAGGAAATAAGATCCGGAGATCAAAG
ATGGAGGAGTCAATTAGTCAAGGGGCGGATCCTGGATCGACGTCTAGCTT
GCATGGTATTCACGGTGACTCGACCTCTTCATCAGACTCTGATGTCGACG
CATACGATGGCGCACATGGCGCTAGCGCAGCCTTCGCCTCTTGTCTCGGG
GCAAATGAACCTATACCGTCGGCATCAACATGCTCCCAAAGTGGTCGAAT
TCAACCGGATAGCTGCCCGGGCCACACTGAGATTGCTACTCTGACACGAT
CTCTACGCTGCCTGGCTGATGTGCCATCAAAATTTTTTTTCGAAACGCCC
GTAGCCATGAGGCATCCAAAACTACGTCCGGAGGACTATCCCATGACACA
GCGTGTGTCGACTCCGACACGCTCGCCGACTTCCTCTCACCACTACCTTT
ATATCCCCGACATCCCATCGGTCCCTCTCCAGTATTCTCCAGGAAGTCCA
AATACAAAGAAACTTGAATCAAGCATGACATTGGGTGGTTGGCGTGGTAA
ACAATTACATGATACACACAGGACGGACTTTATCCCTGAAAATTTGGCAT
TTCCCTGCACATTTGTTACGGCAGCAACAGTCAACAATTTCACAAATTTT
GTGAATAGATGGAATGAATCGTTGTGCTACAGCGTAGTCCTACACTATCG
CCCGGTACCTCTAGTAAGCGATTGGCGCGGAGACGTGCATGCGCCGTCCT
CCTCATTTTCTGAATCCCATGCTTACCATAGGTATGCAACCAGGTTAACG
CCATGCCCTCTGGTGAGCGGCAAACTCCGACATGCCTTCTATACTCCCCG
CATGGAAAATTTCATCATCTGCGGCTTGGCAGTGTCTTTTGATGGTCAGC
ATTCAAATTATTGTTGGCTTCCGCCTCCTTTTTCACGCCGCCCCTTTGAA
GGCTTGCCTTGTTTGGGCGACGACATGGCATGCGCGACCAGCATGAGCGC
TGGTAAGAAGCGAAAAATTAGGGTCGTTGCTGTCTCGGACCGCTCTGTTT
GCATGGTGAACGGTGAGGACAAATCATCAAAAAGCTGTAGTGATGAGACG
CCCACACGGTCTATTCTTCAGGTGAGCATCATGCAAGGGCTCCCTGAAAG
ACCTACGATGGTAGTTTTTGCGTTCGTGGGGTATCAGCCTCGTCACTTAA
GCACCATCCCAAAAGCTACGTCCTCAGTGAATGAGCCTGCCGGTGGTGAT
GGTCCTAATTTGCATCACGTCTACCAGGAACCTTTTGGGCGTCAGAATAT
CGCTTCGTATCAATATAGCAACCCCGCTATGCTTCTTTGCAGACGTTGGA
ATCGCCTGGGTTGTGCATGGTTCAATGAATACGCAAGTCTCCAAGGGTGG
CAGGCCATCAAATCTCTGCTGGCCAAAAAGGGTACCCTCAAGGTAGTCTG
GGACGCGGTAACGGTCCTAGCGACTCTTCGGGAGCGCAATGTTTCAATGG
CGGGACCTTTCGAGGATCCGAAGGTCGGACTTGCGCTACTTGGACGAGAT
GGCCCCCGACGTGGAGCGAGTGGTGTCTCGAACAACGGGCCGTTACACTT
TGAGAAGCTGGACCAAGCATGTGATACAGGGCGCGTTGACTTGCTTGGAG
CGCAAGCCGCAGGGCTCTTGCAATTGCGCGGAGCTGTCGAAAAAATGTTG
GCTAATCACCAGCTTTTGGACCCCTTTCGCTTGATTGAAATGCCTTTATT
GCCTGTTCTGGCTGACATGCAATTCTACGGCATGCGTGTCGACCGATCAT
GGTTCCCTGGGACCGTGCTAGCCATCCAAACACGACTTCTGCTCCTGCAG
GATCTTGCTGACGCCATGGGAGGTTGTCACTTGAATCTCAATTGCCAAGA
TGCGGTTCACCACTTACTTTATGTGGTCTTGCGCTTACCCGTGCCACCGA
AGTGGAGCAGAAAGACAAAAGTGTGGGGCGAAAAGTGTCACTCTGAGAAA
ACGGTGCTTGGTCCTGTGGAAACGGAGTGGCTCGAGGGAATGGTTAACCT
CTCCCCAGCTGTAAAACTGGTCCTAGAATGGAGGCAACTGTCTGCAGCCC
TTCGAAATTTGCAGAGCATACGTAACTGTATACGCCCCCAAGCTTTGCTC
GGAAGCCACCGTGTCAGGTGCCGGGTGCATCCCTCCGGGTCTGCCACTGG
CCGCATCACCTTGAGCGAACCTGCTTTGCAACAAGTGGCGCATGAGGTGC
TAGTGCGAGAGACCGTCCGCGCAAGTATTCAAGATGAGATAGAGGGACGA
CGACCTCTTGCACATAAGCAGGACTCAAAGCAAGACGGTTCTTCATTGCC
CTCCTATCTCTTCACGGATGACATCTCAGCCTCGTTGGATCAAAATTACC
CAGTCAACACATACGGGTACATCGCTTCATCGCAGGTATCATTAGAACGC
CCGAAGATCGCTGTGGCAGCAGTGCGAGTCGACTCTTACCTGTGGGCGAA
CGTCTCGGAAAAAAGTAATTTCCAAGAAGGCTACCAGGCTATGACGTCAC
AGTTTGGGACATTGCGGTGCATATTGAACGCGCGAATATCTCAGCCATTT
CCCAGTCACAAGGTGAGCCACGCGTTGGCTCCAAATCAGGTGCAACATCA
GTCCAGTTTCCTCCTGAACCCCAATTCCTCAGCCGCACGCCTTGACTCAT
CGCTTGCCGATTACTGGAGATCCCGAGGTTTCAACTACAGTTTTGAGGAT
GCAATGCGCATAAGACAGTGCGTAATTGAATTCCCTCCAGGGGTGGTTCT
CACATACCCTGCTGACAAAGTGTACCGTCGACCAGACCCTATTCACGATC
CCCTAAAAGCATGCCATTCCGCCTTTGACGACATGATCAACCCAGCTACG
GTATTGAAACCTCGAATGGCTTTTTTAGCTGCTCGGGGCTGCGTCCTTAT
ATCGGCAGATTACTCTCAGATTGAATTGCGTATGCTAGCACATTTTTCTG
CAGATCCTTTGTTGTGCGATGCGCTAAAGCGAGACGAAGATGTCTTTCAA
ACATTGGCGGCGACGTGGAGGCGAGTGGCAATAGAGAATGTAACGCGTGC
TATGCGTGACGAAGCCAAACAGCTGGCTTATGCGGTACTGTATGGACAAA
GTATTGCGGCGACTGCCCAGCAATTTGCCATCTCTACAGCTGAGGCCGAC
AAACTCCATGTGTCATTCCTCAATACTTACCCGGGTATCCGAAAATTCTT
GCAGGAAAGCAAAGACTTCTGCAAGACCCACGGGTATATTGAAACCCTAC
TGCGTCGTCGACGGCATTTGCCAGGCATTCACAGTCGCAATATCTATGAA
CGTCTGCAGGCGGAGCGGCAAAGTGTCAACTCGATTTGCCAAGGGTCGGC
TGCAGAGGTAATCAAATTGGCCATGATCAATATACACAGCAAACTAGAAG
GCTTACATTGCAGAATAAAGAAAGACAGTCTCGGAGATGTTCGCGATTGT
CGACTTGTGCTTCAGATTCACGACGAGTTGATCTTCGAAGTGAAGGAGCA
GATGGTGACCGAGGTCGTGCAAATCATGAAGGATTGCATGGAAGGAGCAC
TACAATTGAATGTACCTCTGAAGGTCCACGTCAAAGTTGGAGCCTCCTGG
GGTGCTCTAGCGTAAAAGCATGGGCAGAGAGAAATGATGGAGATATTCGC
AAATGACTTGTGTGGTGCAAGAGCGTGTGTGAATTTTGAACTCGTATGTA
CATAAGATTAGCCCTGTGCATAAAAGTCCTCAGGGAGAGGGTGCATGCTT
TTCTCTATACTGTGTTATATACCTATGTGCCTGGATTCAAACAGCTTCTT
GCGGTGCACCCAAAAGATGTCTTGCCCGATCGACAAAAGTGTCCACAAAA
CCTGGCAAAAAGAAATTTGACGTAGCTTCACGTCAAACATAAGCCCTTTA
ATGTTTTTCTTTTTACACATTTACTATGAGTGTGTCCTCAGGTTGTCCTG
GACGTCTTAGTCTTGCGGATGAAGCAGTAAATGGGACTGTCTATGGAAAT
GCGCGCGACATGTCTGCCCCCGGATAAATTTCGTGAAATAATAATGAACA
TGAGTCAATGTCGTTCATG back to topprotein sequence of rna2585 >rna2585-protein ID=rna2585-protein|Name=rna2585|organism=Nannochloropsis gaditana|type=polypeptide|length=83bp
MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEE
WIDGAMAGNLGEVLIRCNNVLYVRGAPEEDMEA back to topmRNA from alignment at CM002459.1:731312..732315+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2585 ID=rna2585|Name=rna2585|organism=Nannochloropsis gaditana|type=mRNA|length=1004bp|location=Sequence derived from alignment at CM002459.1:731312..732315+ (Nannochloropsis gaditana)
ggacgggtcgCTGCCTCAGATGGTGTGTGATACCGGGGAGAGCCTGTCAG
CGCAGACACGGGTTTGCATATGGTACGAATCGTCTAGAACTATGATTGTA
TGGAAGTGGTGCCTTTAGCAGGAGAAGGATTGCTGGTTTTGGAGCGACAA
TTCCTCCCCACCGTGAGGATACTTGCCCTCATGAAGTTTAGGCTTGAGGA
TGACGGCATTATGCATCATGGAGCTAACACTTTGCAGGTCCTAAAACCAT
TACCAAGCACAGGGTCATAGGTCGATTTCGAGACGTATTGACGTCGAGCA
TTAATTCGATATGTCTGCTGTAAGTATTTCGCATGAAACCGGGGGATACA
TGGTCGGCCCTCTATTCGACCGACGGCCCTGCTGTTCGCTCCTctaattc
ctcctccaaccgaCGTGCAGGTACTCGTAAACCCCAAGCCCTTCTTGCAA
GGGCTAACCGGCAAACCTGTCTTCATTAAACTCAAGTGGGGCATGGAGTA
CAAAGGTGTGTGGGTGTGGAAAGTGGCAGCAGATATCTCTGTTTTCTTTG
TCTTGCTCGCATACTTCTCTTGCTTCACTTTCCTGCAAGCATCAGGCTTG
TCGTGTGCACGAAGCGTACACTGATGCCATCCGCGGCCCATGCAGGCATA
CTCCTCTCCGTCGATAACTACTACAACCTGCAACTGGCGGACACTGAGGA
ATGGATCGACGGGGCCATGGCAGGAAACCTGGGAGAGGTGCTGATCAGGT
GGGTGCAGATCAACGATGTGAGAGCGACTCAAGGCAGGCAATGCGAGCCT
CACAtgttccttccccctttgtCTTTTTCTCACATCAGGTGCAACAACGT
TTTGTACGTCAGAGGAGCGCCGgaagaggacatggaggcatAGTGATTGG
CGGTGACGGtgatgaaggggaagagagcgaTGACGGGAGATTTCCGACGG
CGTTTCACAAGGAAATAATTAAAAAAAGCACTTAACCTTGACATATTGGT
TCTC back to topCoding sequence (CDS) from alignment at CM002459.1:731312..732315+ >rna2585 ID=rna2585|Name=rna2585|organism=Nannochloropsis gaditana|type=CDS|length=1008bp|location=Sequence derived from alignment at CM002459.1:731312..732315+ (Nannochloropsis gaditana)
ATGTCTGCTGTACTCGTAAACCCCAAGCCCTTCTTGCAAGGGCTAACCGG
CAAACCTGTCTTCATTAAACTCAAGTGGGGCATGGAGTACAAAGGCATAC
TCCTCTCCGTCGATAACTACTACAACCTGCAACTGGCGGACACTGAGGAA
TGGATCGACGGGGCCATGGCAGGAAACCTGGGAGAGGTGCTGATCAGGTG
CAACAACGTTTTGTACGTCAGAGGAGCGCCGgaagaggacatggaggcat
AGATGTCTGCTGTACTCGTAAACCCCAAGCCCTTCTTGCAAGGGCTAACC
GGCAAACCTGTCTTCATTAAACTCAAGTGGGGCATGGAGTACAAAGGCAT
ACTCCTCTCCGTCGATAACTACTACAACCTGCAACTGGCGGACACTGAGG
AATGGATCGACGGGGCCATGGCAGGAAACCTGGGAGAGGTGCTGATCAGG
TGCAACAACGTTTTGTACGTCAGAGGAGCGCCGgaagaggacatggaggc
atAGATGTCTGCTGTACTCGTAAACCCCAAGCCCTTCTTGCAAGGGCTAA
CCGGCAAACCTGTCTTCATTAAACTCAAGTGGGGCATGGAGTACAAAGGC
ATACTCCTCTCCGTCGATAACTACTACAACCTGCAACTGGCGGACACTGA
GGAATGGATCGACGGGGCCATGGCAGGAAACCTGGGAGAGGTGCTGATCA
GGTGCAACAACGTTTTGTACGTCAGAGGAGCGCCGgaagaggacatggag
gcatAGATGTCTGCTGTACTCGTAAACCCCAAGCCCTTCTTGCAAGGGCT
AACCGGCAAACCTGTCTTCATTAAACTCAAGTGGGGCATGGAGTACAAAG
GCATACTCCTCTCCGTCGATAACTACTACAACCTGCAACTGGCGGACACT
GAGGAATGGATCGACGGGGCCATGGCAGGAAACCTGGGAGAGGTGCTGAT
CAGGTGCAACAACGTTTTGTACGTCAGAGGAGCGCCGgaagaggacatgg
aggcatAG back to top
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