EWM28091.1, cds2577 (CDS) Nannochloropsis gaditana

Overview
NameEWM28091.1
Unique Namecds2577
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:731622..731630 +
Alignment locationCM002459.1:731732..731816 +
Alignment locationCM002459.1:731957..732059 +
Alignment locationCM002459.1:732150..732204 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28091.1
Productsmall nuclear ribonucleoprotein f
Orig transcript idgnl|cribi|Naga_100120g20.6952.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:731622..731630 +
CM002459.1supercontigCM002459.1:731732..731816 +
CM002459.1supercontigCM002459.1:731957..732059 +
CM002459.1supercontigCM002459.1:732150..732204 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005732small nucleolar ribonucleoprotein complex
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR001163Ribonucl_LSM
IPR016487Lsm6/sSmF
IPR006649Ribonucl_LSM_euk/arc
Homology
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|585110434|gb|EWM28091.1| (small nuclear ribonucleoprotein f [Nannochloropsis gaditana])

HSP 1 Score: 171.014 bits (432), Expect = 4.332e-54
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
Query:    1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEEDMEA 83
            MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEEDMEA
Sbjct:    1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEEDMEA 83          
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|545363661|ref|XP_005646946.1| (small nuclear ribo protein F [Coccomyxa subellipsoidea C-169] >gi|384248919|gb|EIE22402.1| small nuclear ribo protein F [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 133.265 bits (334), Expect = 4.979e-39
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 0
Query:    2 SAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEED 80
            + V VNPKPFL GLTGKPV IKLKWGMEYKG L+SVD+Y NLQLA TEE+IDG   GNLGEVLIRCNNVLY+RG PEED
Sbjct:    3 ATVPVNPKPFLNGLTGKPVIIKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYMRGVPEED 81          
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|672193400|ref|XP_008776021.1| (PREDICTED: probable small nuclear ribonucleoprotein F isoform X2 [Phoenix dactylifera] >gi|743767756|ref|XP_010914148.1| PREDICTED: probable small nuclear ribonucleoprotein F isoform X2 [Elaeis guineensis] >gi|1147592378|ref|XP_020100040.1| probable small nuclear ribonucleoprotein F [Ananas comosus])

HSP 1 Score: 130.568 bits (327), Expect = 4.917e-38
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 0
Query:    1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEED 80
            M+AV VNPKPFL  LTGKPV +KLKWGMEYKG L+SVD+Y NLQLA+TEE+IDG  +GNLGE+LIRCNNVLY+RG PE++
Sbjct:    1 MAAVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDE 80          
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|1179571071|ref|XP_020699046.1| (probable small nuclear ribonucleoprotein F isoform X1 [Dendrobium catenatum])

HSP 1 Score: 130.183 bits (326), Expect = 9.293e-38
Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 0
Query:    1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEED 80
            M+ V VNPKPFL  LTGKPV +KLKWGMEYKG L+SVD+Y NLQLA+TEE+IDG  +GNLGE+LIRCNNVLY+RG PE++
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEFIDGQFSGNLGEILIRCNNVLYLRGVPEDE 80          
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|586717722|ref|XP_006848141.1| (probable small nuclear ribonucleoprotein F [Amborella trichopoda] >gi|769807753|ref|XP_011624737.1| probable small nuclear ribonucleoprotein F [Amborella trichopoda] >gi|1173126455|ref|XP_020525349.1| probable small nuclear ribonucleoprotein F [Amborella trichopoda] >gi|548851446|gb|ERN09722.1| hypothetical protein AMTR_s00029p00226370 [Amborella trichopoda])

HSP 1 Score: 130.183 bits (326), Expect = 9.499e-38
Identity = 59/80 (73.75%), Postives = 71/80 (88.75%), Query Frame = 0
Query:    1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEED 80
            M+ V VNPKPFL  LTGKPV +KLKWGMEYKG L+SVD+Y NLQLA+TEE+IDG ++GNLGE+LIRCNNVLY+RG PE++
Sbjct:    1 MATVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQLSGNLGEILIRCNNVLYLRGVPEDE 80          
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|1100849881|ref|WP_071414434.1| (hypothetical protein [Acinetobacter baumannii] >gi|116782528|gb|ABK22541.1| unknown [Picea sitchensis] >gi|1096380395|gb|OIC70568.1| hypothetical protein A7L55_22440 [Acinetobacter baumannii])

HSP 1 Score: 129.798 bits (325), Expect = 1.179e-37
Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 0
Query:    1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPE-EDME 82
            M+ V VNPKPFL  LTGKPV +KLKWGMEYKG L+SVD+Y NLQLA TEE+IDG   GNLGEVLIRCNNVLY+RG PE ED+E
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVPEDEDIE 83          
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|1175828005|ref|XP_020576044.1| (probable small nuclear ribonucleoprotein F [Phalaenopsis equestris])

HSP 1 Score: 129.798 bits (325), Expect = 1.196e-37
Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 0
Query:    1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEED 80
            M+ V VNPKPFL  LTGKPV +KLKWGMEYKG L+SVD+Y NLQLA+TEE+IDG  +GNLGE+LIRCNNVLY+RG PE++
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGEFSGNLGEILIRCNNVLYLRGVPEDE 80          
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|743809593|ref|XP_010928662.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Elaeis guineensis])

HSP 1 Score: 129.798 bits (325), Expect = 1.223e-37
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 0
Query:    1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEED 80
            M+ V VNPKPFL  LTGKPV +KLKWGMEYKG L+SVD+Y NLQLA+TEE+IDG   GNLGE+LIRCNNVLY+RG PE++
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDE 80          
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|1150675789|ref|XP_020270060.1| (probable small nuclear ribonucleoprotein F [Asparagus officinalis] >gi|1150710463|ref|XP_020265854.1| probable small nuclear ribonucleoprotein F isoform X2 [Asparagus officinalis])

HSP 1 Score: 129.798 bits (325), Expect = 1.236e-37
Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 0
Query:    1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEED 80
            M+A+ VNPKPFL  LTGKPV +KLKWGMEYKG L+SVD+Y NLQLA+TEE+IDG   GNLGE+LIRCNNVLY+RG PE++
Sbjct:    1 MAAIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDE 80          
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|196008042|ref|XP_002113887.1| (hypothetical protein TRIADDRAFT_26794 [Trichoplax adhaerens] >gi|190584291|gb|EDV24361.1| hypothetical protein TRIADDRAFT_26794, partial [Trichoplax adhaerens])

HSP 1 Score: 129.413 bits (324), Expect = 1.346e-37
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 0
Query:    3 AVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEEDMEA 83
             V +NPKPFL GLTGKPV +KLKWGM+YKG L+SVDNY NLQLA+TEE+++GA+ GNLGEVLIRCNNVLYVR   EED EA
Sbjct:    1 TVPINPKPFLNGLTGKPVLVKLKWGMDYKGFLVSVDNYMNLQLANTEEYVEGALTGNLGEVLIRCNNVLYVREIDEEDGEA 81          
The following BLAST results are available for this feature:
BLAST of EWM28091.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110434|gb|EWM28091.1|4.332e-54100.00small nuclear ribonucleoprotein f [Nannochloropsis... [more]
gi|545363661|ref|XP_005646946.1|4.979e-3979.75small nuclear ribo protein F [Coccomyxa subellipso... [more]
gi|672193400|ref|XP_008776021.1|4.917e-3875.00PREDICTED: probable small nuclear ribonucleoprotei... [more]
gi|1179571071|ref|XP_020699046.1|9.293e-3873.75probable small nuclear ribonucleoprotein F isoform... [more]
gi|586717722|ref|XP_006848141.1|9.499e-3873.75probable small nuclear ribonucleoprotein F [Ambore... [more]
gi|1100849881|ref|WP_071414434.1|1.179e-3775.90hypothetical protein [Acinetobacter baumannii] >gi... [more]
gi|1175828005|ref|XP_020576044.1|1.196e-3773.75probable small nuclear ribonucleoprotein F [Phalae... [more]
gi|743809593|ref|XP_010928662.1|1.223e-3773.75PREDICTED: probable small nuclear ribonucleoprotei... [more]
gi|1150675789|ref|XP_020270060.1|1.236e-3773.75probable small nuclear ribonucleoprotein F [Aspara... [more]
gi|196008042|ref|XP_002113887.1|1.346e-3775.31hypothetical protein TRIADDRAFT_26794 [Trichoplax ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2585rna2585Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications