EWM28091.1, cds2577 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|585110434|gb|EWM28091.1| (small nuclear ribonucleoprotein f [Nannochloropsis gaditana]) HSP 1 Score: 171.014 bits (432), Expect = 4.332e-54 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEEDMEA 83
MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEEDMEA
Sbjct: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEEDMEA 83
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|545363661|ref|XP_005646946.1| (small nuclear ribo protein F [Coccomyxa subellipsoidea C-169] >gi|384248919|gb|EIE22402.1| small nuclear ribo protein F [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 133.265 bits (334), Expect = 4.979e-39 Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 0
Query: 2 SAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEED 80
+ V VNPKPFL GLTGKPV IKLKWGMEYKG L+SVD+Y NLQLA TEE+IDG GNLGEVLIRCNNVLY+RG PEED
Sbjct: 3 ATVPVNPKPFLNGLTGKPVIIKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYMRGVPEED 81
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|672193400|ref|XP_008776021.1| (PREDICTED: probable small nuclear ribonucleoprotein F isoform X2 [Phoenix dactylifera] >gi|743767756|ref|XP_010914148.1| PREDICTED: probable small nuclear ribonucleoprotein F isoform X2 [Elaeis guineensis] >gi|1147592378|ref|XP_020100040.1| probable small nuclear ribonucleoprotein F [Ananas comosus]) HSP 1 Score: 130.568 bits (327), Expect = 4.917e-38 Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 0
Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEED 80
M+AV VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y NLQLA+TEE+IDG +GNLGE+LIRCNNVLY+RG PE++
Sbjct: 1 MAAVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYLRGVPEDE 80
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|1179571071|ref|XP_020699046.1| (probable small nuclear ribonucleoprotein F isoform X1 [Dendrobium catenatum]) HSP 1 Score: 130.183 bits (326), Expect = 9.293e-38 Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 0
Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEED 80
M+ V VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y NLQLA+TEE+IDG +GNLGE+LIRCNNVLY+RG PE++
Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEFIDGQFSGNLGEILIRCNNVLYLRGVPEDE 80
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|586717722|ref|XP_006848141.1| (probable small nuclear ribonucleoprotein F [Amborella trichopoda] >gi|769807753|ref|XP_011624737.1| probable small nuclear ribonucleoprotein F [Amborella trichopoda] >gi|1173126455|ref|XP_020525349.1| probable small nuclear ribonucleoprotein F [Amborella trichopoda] >gi|548851446|gb|ERN09722.1| hypothetical protein AMTR_s00029p00226370 [Amborella trichopoda]) HSP 1 Score: 130.183 bits (326), Expect = 9.499e-38 Identity = 59/80 (73.75%), Postives = 71/80 (88.75%), Query Frame = 0
Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEED 80
M+ V VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y NLQLA+TEE+IDG ++GNLGE+LIRCNNVLY+RG PE++
Sbjct: 1 MATVPVNPKPFLNNLTGKPVMVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQLSGNLGEILIRCNNVLYLRGVPEDE 80
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|1100849881|ref|WP_071414434.1| (hypothetical protein [Acinetobacter baumannii] >gi|116782528|gb|ABK22541.1| unknown [Picea sitchensis] >gi|1096380395|gb|OIC70568.1| hypothetical protein A7L55_22440 [Acinetobacter baumannii]) HSP 1 Score: 129.798 bits (325), Expect = 1.179e-37 Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 0
Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPE-EDME 82
M+ V VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y NLQLA TEE+IDG GNLGEVLIRCNNVLY+RG PE ED+E
Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVPEDEDIE 83
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|1175828005|ref|XP_020576044.1| (probable small nuclear ribonucleoprotein F [Phalaenopsis equestris]) HSP 1 Score: 129.798 bits (325), Expect = 1.196e-37 Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 0
Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEED 80
M+ V VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y NLQLA+TEE+IDG +GNLGE+LIRCNNVLY+RG PE++
Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGEFSGNLGEILIRCNNVLYLRGVPEDE 80
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|743809593|ref|XP_010928662.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Elaeis guineensis]) HSP 1 Score: 129.798 bits (325), Expect = 1.223e-37 Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 0
Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEED 80
M+ V VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y NLQLA+TEE+IDG GNLGE+LIRCNNVLY+RG PE++
Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDE 80
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|1150675789|ref|XP_020270060.1| (probable small nuclear ribonucleoprotein F [Asparagus officinalis] >gi|1150710463|ref|XP_020265854.1| probable small nuclear ribonucleoprotein F isoform X2 [Asparagus officinalis]) HSP 1 Score: 129.798 bits (325), Expect = 1.236e-37 Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 0
Query: 1 MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEED 80
M+A+ VNPKPFL LTGKPV +KLKWGMEYKG L+SVD+Y NLQLA+TEE+IDG GNLGE+LIRCNNVLY+RG PE++
Sbjct: 1 MAAIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDE 80
BLAST of EWM28091.1 vs. NCBI_GenBank
Match: gi|196008042|ref|XP_002113887.1| (hypothetical protein TRIADDRAFT_26794 [Trichoplax adhaerens] >gi|190584291|gb|EDV24361.1| hypothetical protein TRIADDRAFT_26794, partial [Trichoplax adhaerens]) HSP 1 Score: 129.413 bits (324), Expect = 1.346e-37 Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 0
Query: 3 AVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNLQLADTEEWIDGAMAGNLGEVLIRCNNVLYVRGAPEEDMEA 83
V +NPKPFL GLTGKPV +KLKWGM+YKG L+SVDNY NLQLA+TEE+++GA+ GNLGEVLIRCNNVLYVR EED EA
Sbjct: 1 TVPINPKPFLNGLTGKPVLVKLKWGMDYKGFLVSVDNYMNLQLANTEEYVEGALTGNLGEVLIRCNNVLYVREIDEEDGEA 81 The following BLAST results are available for this feature:
BLAST of EWM28091.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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