rna2583, rna2583 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2583
Unique Name	rna2583
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1265
Alignment location	CM002459.1:722537..724266 +

Link to JBrowse

Properties


Property Name	Value
Product	dna-directed rna polymerases and iii subunit rpabc3
Orig transcript id	gnl\|cribi\|Naga_100120g23.6944.mrna
Orig protein id	gnl\|cribi\|Naga_100120g23.6944
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:722537..724266 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100120g23	gene2470	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2583	rna2583-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28083.1	cds2575	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:722537..724266+
coding sequence from alignment at CM002459.1:722537..724266+

mRNA sequence

>rna2583 ID=rna2583|Name=rna2583|organism=Nannochloropsis gaditana|type=mRNA|length=1265bp
GTAAAGACTGTGCTTGGTGTCTTTCTTTCGACGTCGCGGTCCTTTTAGGG
TGCTGGGGATCGGATAGTGATGCTTTCTAACCGCGCCGGGCGCAACGGAA
CACTCTCTGAGGATGATCGCCTACTCTCTTTTTCTGCGCTTTATCACAGG
TGAAGAAATCAGGAAACAAGAAAAATGATGGCGCGTACATGCGGTTACCA
GCTCGTAGCCATGGTCATTTTTCTTCGGACTTGCGTGGCTTTCGTGCCTC
CCTCGTCCTCTCTGCCTCCATCTCCTACCCTCTTCTCCCGCTCGACCCGG
CTCTCGGTGGGAAATGTGAACGTGGACTTCTACCCCGGCCTACGAGGCCT
GTTTGACATGGGCAACATTATTCTGGAAGAAGTGCGTGCAGGCGGCAAAG
AGGCCGAGCAGGAGATGGCTGAGATGGCGGGCTGGGTCAAAGATAAAGTA
AGAGTGAAGCAGCAAGTGGTGCAGCAGAGCCCTGTGATCTTGCACCCTGT
GTTTGGGGAGCTTGTGAAGGACCTCACCTACAAAAAAATCTATTGCACGA
GTGTGCAAAAGCTTGCTTCCATCCCGATCTGGGAACAGCAGCGCATTTAC
CGGGCGGAACGAGCGCAGCTTCTAGCGAACGACATCAAAGCCAAGCTGCA
GGAAGGGAAAGCGCTGACCTTGCCGGGGTCCTTGACCGTCTACGAGATGG
GGGAGGAGATTGGACTGCTGGACGGACAGCACCGTCTGGGAGCGCTGAAG
CTCTTGATGGATTCGGGCGTGCTTATTCCCGAGGCGCACCTGATATTGGT
AGAAGTCTTCCCTGTCAAAGCGCAAGAGGATGTAAAGCGCCTCTTCACGG
AGATCAACACCGCGCAGCCTGTGTCCATTATCGACATGCCCGATATGGCC
GACGCCTCGGAGAAGGAGATCATCACGCAGACCGCCGAACTCCTTCGGAT
CGAGTTTTCAGAAATGTTCAAGCCGAGCGTCAACTGTCGCCTTCCCCACG
TGAACATCGACGTCCTCCGCGACGGCCTCTTCAAGAGCAATGTGGTCGGC
CGCACGGGGACCGGGAATGCCCAGCAGCTCCTGGAGTGGGTGAAGGCCAA
GAACGACTTGTTGGCGGCACGGGACGACGCGGCCTGGCTGCGGGCCTACA
AGGGGAGGAAGCCGGAGGCAGTTGAAAAGGCGGTCTTGAAGGCGCGAGAC
AACCATTTCTTCTTAGGGATGGAGCCCAACTGGATGGATGTGGAGTAGAA
AGGGGGCGGGGGGGG

protein sequence of rna2583

>rna2583-protein ID=rna2583-protein|Name=rna2583|organism=Nannochloropsis gaditana|type=polypeptide|length=221bp
MGHLLITFHCHSYTFVFQRRAILDRSDGPRFETRRSHLLRYPPLEAGWKV
RYPRISQHLQGKAMSHNLFDDTFVITGLNPHKKRFARVDRLVGRSTLFEM
DLILDINSEIYQVRQDDEIALMLAHTPYSDGKLDPKEYQHDMSSALMDQY
EYVTYGKVFKIESAPSAGANVGGSKESKVAIMISFGGLLMKLSGDQKHVA
RISIDSPIYCFIRKTKTSRTT

mRNA from alignment at CM002459.1:722537..724266+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2583 ID=rna2583|Name=rna2583|organism=Nannochloropsis gaditana|type=mRNA|length=1730bp|location=Sequence derived from alignment at CM002459.1:722537..724266+ (Nannochloropsis gaditana)
ATGGGACATTTACTCATTACATTTCATTGTCATTCATATACCTTCGTCTT
CCAGAGAAGAGCGATATTGGACCGTAGTGACGGACCTCGCTTCGAGACCC
GGCGGTCACACTTATTGCGATATCCGCCTTTGGAAGCAGGCTGGAAGGTC
AGGTATCCTCGTATATCTCAACACTTGCAGGGGAAAGCCATGTCGCACAA
TCTGTTCGATGACACTTTTGTCATAACGGGCCTAAATCCGCACAAAAAGC
GCTTCGCTAGAGGTAAAAAAAATGTTAATGGGGGTGTACTGTCACGCTAG
TGGCTAGAAAAGCATGATACAAACGATATGGTCTCATACATGCAACCTGT
TCAATTTGGCGCTTTTATATCATTGGAAGCATGACCCTACGAACGATGTG
TGGCCGTTGCTCATGATATGTATCCAAACGAAGCGTCGTGTCCCGGCATC
TCGCAGTAGATGAGGCGCAGATACGCATGTGGAACTCATGCACACCATCA
CATTCGTTACAGTGGACCGActggtggggaggagtaCTTTGTTTGAAATG
GACCTTATCCTGGGTAAGACGATTTTATTGGGCCTAAGAGATGTAATCTG
TCGATTGCCTACCTAAAAATTGCATGATGCGTCCTCCTTGTGTCGCACCC
ACGGCACGTGATGCTTGTTATGTCACGCACATCTTTTTACAGATATAAAT
AGCGAAATCTATCAAGTCAGGCAAGACGACGAAATTGCATTGATGTTGGC
ACAGTAAGTGAAAGGAAGCATGTGAGCGCGTCGTGCCCGTCATGCATGTA
GGATATTCGCAACCAACGGTCCCCCGTTCTTGTCAAGGCAAGCTCCCCAG
AGGATCCCTAATGCCACGGTCGAAATGACTTGCTTTACGTGCTCGCTGAG
TCGACTCATGTTGCTTTTCCAAATGAAACGCATCTTCTTTCTGCCTACAG
TACGCCGTACAGCGATGGAAAGCTTGATCCGAAGGAGTACCAGCATGACA
TGTCGGTAGGTTACGGTCTTGGCAGTGACGGAGCCGAGGCGACCAAGGCT
TACATGAGTTTTTTAAATATTTACTCCATTAAACCATTCTATTCAGTCGG
CGCTTATGGACCAATACGAGTACGTCACGTACGGCAAGGTGTTCAAGATC
GAGTCGGCGCCCTCGGCCGGGGCCAATGTCGGCGGTAGCAAGGAATCCAA
GGTGGCAATCATGATCTCGTTCGGTGGGCTACTCATGAAGCTATCTGGTG
ATCAAAAGTAagttttcccgcccttctggCTCTGTTAGTAGCGTCCTCAA
GCAATGAGGGGAAGCGGTTTCGTCATGAACGACATTGACTCATGTTCATT
ATTATTTCACGAAATTTATCCGGGGGCAGACATGTCGCGCGCATTTCCAT
AGACAGTCCCATTTACTGCTTCATCCGCAAGACTAAGACGTCCAGGACAA
CCTGAGGACACACTCATAGTAAATGTGTAAAAAGAAAAACATTAAAGGGC
TTATGTTTGACGTGAAGCTACGTCAAATTTCTTTTTGCCAGGTTTTGTGG
ACACTTTTGTCGATCGGGCAAGACATCTTTTGGGTGCACCGCAAGAAGCT
GTTTGAATCCAGGCACATAGGTATATAACACAGTATAGAGAAAAGCAtgc
accctctccctgaGGACTTTTATGCACAGGGCTAATCTTATGTACATACG
AGTTCAAAATTCACACACGCTCTTGCACCA

Coding sequence (CDS) from alignment at CM002459.1:722537..724266+

>rna2583 ID=rna2583|Name=rna2583|organism=Nannochloropsis gaditana|type=CDS|length=3996bp|location=Sequence derived from alignment at CM002459.1:722537..724266+ (Nannochloropsis gaditana)
ATGGGACATTTACTCATTACATTTCATTGTCATTCATATACCTTCGTCTT
CCAGAGAAGAGCGATATTGGACCGTAGTGACGGACCTCGCTTCGAGACCC
GGCGGTCACACTTATTGCGATATCCGCCTTTGGAAGCAGGCTGGAAGGTC
AGGTATCCTCGTATATCTCAACACTTGCAGGGGAAAGCCATGTCGCACAA
TCTGTTCGATGACACTTTTGTCATAACGGGCCTAAATCCGCACAAAAAGC
GCTTCGCTAGAGTGGACCGActggtggggaggagtaCTTTGTTTGAAATG
GACCTTATCCTGGATATAAATAGCGAAATCTATCAAGTCAGGCAAGACGA
CGAAATTGCATTGATGTTGGCACATACGCCGTACAGCGATGGAAAGCTTG
ATCCGAAGGAGTACCAGCATGACATGTCGTCGGCGCTTATGGACCAATAC
GAGTACGTCACGTACGGCAAGGTGTTCAAGATCGAGTCGGCGCCCTCGGC
CGGGGCCAATGTCGGCGGTAGCAAGGAATCCAAGGTGGCAATCATGATCT
CGTTCGGTGGGCTACTCATGAAGCTATCTGGTGATCAAAAACATGTCGCG
CGCATTTCCATAGACAGTCCCATTTACTGCTTCATCCGCAAGACTAAGAC
GTCCAGGACAACCTGAATGGGACATTTACTCATTACATTTCATTGTCATT
CATATACCTTCGTCTTCCAGAGAAGAGCGATATTGGACCGTAGTGACGGA
CCTCGCTTCGAGACCCGGCGGTCACACTTATTGCGATATCCGCCTTTGGA
AGCAGGCTGGAAGGTCAGGTATCCTCGTATATCTCAACACTTGCAGGGGA
AAGCCATGTCGCACAATCTGTTCGATGACACTTTTGTCATAACGGGCCTA
AATCCGCACAAAAAGCGCTTCGCTAGAGTGGACCGActggtggggaggag
taCTTTGTTTGAAATGGACCTTATCCTGGATATAAATAGCGAAATCTATC
AAGTCAGGCAAGACGACGAAATTGCATTGATGTTGGCACATACGCCGTAC
AGCGATGGAAAGCTTGATCCGAAGGAGTACCAGCATGACATGTCGTCGGC
GCTTATGGACCAATACGAGTACGTCACGTACGGCAAGGTGTTCAAGATCG
AGTCGGCGCCCTCGGCCGGGGCCAATGTCGGCGGTAGCAAGGAATCCAAG
GTGGCAATCATGATCTCGTTCGGTGGGCTACTCATGAAGCTATCTGGTGA
TCAAAAACATGTCGCGCGCATTTCCATAGACAGTCCCATTTACTGCTTCA
TCCGCAAGACTAAGACGTCCAGGACAACCTGAATGGGACATTTACTCATT
ACATTTCATTGTCATTCATATACCTTCGTCTTCCAGAGAAGAGCGATATT
GGACCGTAGTGACGGACCTCGCTTCGAGACCCGGCGGTCACACTTATTGC
GATATCCGCCTTTGGAAGCAGGCTGGAAGGTCAGGTATCCTCGTATATCT
CAACACTTGCAGGGGAAAGCCATGTCGCACAATCTGTTCGATGACACTTT
TGTCATAACGGGCCTAAATCCGCACAAAAAGCGCTTCGCTAGAGTGGACC
GActggtggggaggagtaCTTTGTTTGAAATGGACCTTATCCTGGATATA
AATAGCGAAATCTATCAAGTCAGGCAAGACGACGAAATTGCATTGATGTT
GGCACATACGCCGTACAGCGATGGAAAGCTTGATCCGAAGGAGTACCAGC
ATGACATGTCGTCGGCGCTTATGGACCAATACGAGTACGTCACGTACGGC
AAGGTGTTCAAGATCGAGTCGGCGCCCTCGGCCGGGGCCAATGTCGGCGG
TAGCAAGGAATCCAAGGTGGCAATCATGATCTCGTTCGGTGGGCTACTCA
TGAAGCTATCTGGTGATCAAAAACATGTCGCGCGCATTTCCATAGACAGT
CCCATTTACTGCTTCATCCGCAAGACTAAGACGTCCAGGACAACCTGAAT
GGGACATTTACTCATTACATTTCATTGTCATTCATATACCTTCGTCTTCC
AGAGAAGAGCGATATTGGACCGTAGTGACGGACCTCGCTTCGAGACCCGG
CGGTCACACTTATTGCGATATCCGCCTTTGGAAGCAGGCTGGAAGGTCAG
GTATCCTCGTATATCTCAACACTTGCAGGGGAAAGCCATGTCGCACAATC
TGTTCGATGACACTTTTGTCATAACGGGCCTAAATCCGCACAAAAAGCGC
TTCGCTAGAGTGGACCGActggtggggaggagtaCTTTGTTTGAAATGGA
CCTTATCCTGGATATAAATAGCGAAATCTATCAAGTCAGGCAAGACGACG
AAATTGCATTGATGTTGGCACATACGCCGTACAGCGATGGAAAGCTTGAT
CCGAAGGAGTACCAGCATGACATGTCGTCGGCGCTTATGGACCAATACGA
GTACGTCACGTACGGCAAGGTGTTCAAGATCGAGTCGGCGCCCTCGGCCG
GGGCCAATGTCGGCGGTAGCAAGGAATCCAAGGTGGCAATCATGATCTCG
TTCGGTGGGCTACTCATGAAGCTATCTGGTGATCAAAAACATGTCGCGCG
CATTTCCATAGACAGTCCCATTTACTGCTTCATCCGCAAGACTAAGACGT
CCAGGACAACCTGAATGGGACATTTACTCATTACATTTCATTGTCATTCA
TATACCTTCGTCTTCCAGAGAAGAGCGATATTGGACCGTAGTGACGGACC
TCGCTTCGAGACCCGGCGGTCACACTTATTGCGATATCCGCCTTTGGAAG
CAGGCTGGAAGGTCAGGTATCCTCGTATATCTCAACACTTGCAGGGGAAA
GCCATGTCGCACAATCTGTTCGATGACACTTTTGTCATAACGGGCCTAAA
TCCGCACAAAAAGCGCTTCGCTAGAGTGGACCGActggtggggaggagta
CTTTGTTTGAAATGGACCTTATCCTGGATATAAATAGCGAAATCTATCAA
GTCAGGCAAGACGACGAAATTGCATTGATGTTGGCACATACGCCGTACAG
CGATGGAAAGCTTGATCCGAAGGAGTACCAGCATGACATGTCGTCGGCGC
TTATGGACCAATACGAGTACGTCACGTACGGCAAGGTGTTCAAGATCGAG
TCGGCGCCCTCGGCCGGGGCCAATGTCGGCGGTAGCAAGGAATCCAAGGT
GGCAATCATGATCTCGTTCGGTGGGCTACTCATGAAGCTATCTGGTGATC
AAAAACATGTCGCGCGCATTTCCATAGACAGTCCCATTTACTGCTTCATC
CGCAAGACTAAGACGTCCAGGACAACCTGAATGGGACATTTACTCATTAC
ATTTCATTGTCATTCATATACCTTCGTCTTCCAGAGAAGAGCGATATTGG
ACCGTAGTGACGGACCTCGCTTCGAGACCCGGCGGTCACACTTATTGCGA
TATCCGCCTTTGGAAGCAGGCTGGAAGGTCAGGTATCCTCGTATATCTCA
ACACTTGCAGGGGAAAGCCATGTCGCACAATCTGTTCGATGACACTTTTG
TCATAACGGGCCTAAATCCGCACAAAAAGCGCTTCGCTAGAGTGGACCGA
ctggtggggaggagtaCTTTGTTTGAAATGGACCTTATCCTGGATATAAA
TAGCGAAATCTATCAAGTCAGGCAAGACGACGAAATTGCATTGATGTTGG
CACATACGCCGTACAGCGATGGAAAGCTTGATCCGAAGGAGTACCAGCAT
GACATGTCGTCGGCGCTTATGGACCAATACGAGTACGTCACGTACGGCAA
GGTGTTCAAGATCGAGTCGGCGCCCTCGGCCGGGGCCAATGTCGGCGGTA
GCAAGGAATCCAAGGTGGCAATCATGATCTCGTTCGGTGGGCTACTCATG
AAGCTATCTGGTGATCAAAAACATGTCGCGCGCATTTCCATAGACAGTCC
CATTTACTGCTTCATCCGCAAGACTAAGACGTCCAGGACAACCTGA

Synonyms

Publications