rna2580, rna2580 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2580
Unique Name	rna2580
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2684
Alignment location	CM002459.1:714301..715766 -

Link to JBrowse

Properties


Property Name	Value
Product	e3 ubiquitin-protein ligase
Orig transcript id	gnl\|cribi\|Naga_100036g2.2534.mrna
Orig protein id	gnl\|cribi\|Naga_100036g2.2534
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:714301..715766 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100036g2	gene2467	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2580	rna2580-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28114.1	cds2572	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:714301..715766-
coding sequence from alignment at CM002459.1:714301..715766-

mRNA sequence

>rna2580 ID=rna2580|Name=rna2580|organism=Nannochloropsis gaditana|type=mRNA|length=2684bp
CGCGAGACCATTCTGTGGCCACCTTCTTCGTTTTCGCAATCCCGCCTTAG
ATCAGGGGTGCTGTTTTCATTGACGCACTCAGCTTTCTCGTGATAGGGTG
AAAGAATATATTGTGCCATCTTCCTCAGGGGGATCTTTTCGCGGTCGACA
CGAATAAAAACGTTCCTCCGGACCTCGAACCATGGGGGAGGGGGGAGTTA
TGTCTCAAGAAACCAAAAAAGATCAACCCTACTCTCTCCAATACAACAGA
GGAAAGGAAAGCACGCCAACCACGTTCCTCATAGTAAACATGCATGAATG
ACGCGAGGATGGCTTTATATTTTGGGTCGGTGCTTGGCGAATATTATCCC
CCGTTGTCCGTCTCTGTCCGTTTAAGACATGGACTCTGTCTCAGTGCGCT
ACCCCCGCTTATTTCGAGTTCATTGTGGAAAAAGAAAAATTTCACTCGAA
AAAGACTGTAACTTGATCTCTACAAATTATTTCCTTGCTAAAACAAAGAC
GGGAAATATGCTTTTTCGAAAGACGTAATCCGTGGTACCCCGTAGGTTTG
TCGAGAAAAGTGATTTTTCTGAGATCGTATACCAGCTTTCTTCGTCAATT
TATATTCAAGTCAAGAAGAAGACCTTAACCGAAACAAACTAGTTTCCACC
ACGTCGCCTACGCAGCTACCAAGTCGGGCTCCTGAGAGCTCGAGCTCGCT
GACCGCGAAGGGCTTTCTTGAAGCAATGCACTCGCAGCGGTCTCGCAATG
CACTGAACTTGTCGAGTGCGCGCGGCGTTGTGCCTCCTCATGGTACGGGG
ATCTGTGTTTTTTCACCTGATCAAACGGCATGGCACATGCTCATAATTCC
AAATGTGTCTGACTGTCGTCCGATTCTCAACATAACAACAACCTCCTCCC
TTCGGACCTCGTTCAAGCGTGTATCATTTTATCTTGCTTAACAATCTTCG
ACTGTAATGGGCCGCGAAGCAGCTAGACGAGATGTGTTGCGGTTTACTTC
GCTTCTTCTACTTGGTATAGGTGGCGCAAACGCATTTTCACGGCCTCCAA
AGACCTGCTCTCCTAGCATCTCGGTCTACCCGGCCCGACGTCCTTCCGAT
CACGCAACTTTCTTGCCTCTTCCGGCGGTGGCCAACCCCGCGGAAAAAGC
TGCTGTCAATTCTGCAGTTGAACATGAGGGACAGCGCAAGCTCGCTCAAG
ACCTGGTGACCATTCAGGAATATTTGAACCGCGACCATAAAGATCTACTT
TGCCGCTGGGCAAGAGCTTTCTGCCCTGTAGGGGACGAAATCAGCAAAGC
CAATTTTTGGCGTGGCGATGCCATGACCATCTTAGACACACAATGTACGC
AAGTTCGACTGGATGGCTTGGATTTGCGCGTGGCTGTTGCCGAACAAGGC
ATATTCGGTAAGCCGAAAATTAGGGAAGTCGACCAGTCCATCACCTTTTC
GACACAGAGGATCCGCTCCAGGCCCGCGGACGTTATACGGGCCATGATAA
GCATGGCCTCGACGATCGGTGACGAGGACTCGACCGCCAGCCTCTACAAG
ATCCCTGTGGACGACGGGAAGTGGGTGATCCCCAACAACCTGTACATGAA
CGGCGTGCCCTGGAAGCCGTTCACCAGGCAATTCTTCTATAATCGAATAG
TCCGCGCCGTGGACGCGGCCATCAGAGACCCGTCCTTTCCGAACCGCATG
GCCATCAAGTTCCTCACGCCGGAGAGCAATCCCGCCTTCGACACCTACCG
GATCGGCACGATCTTGGAGCTGGTGCGAGAGCTGGCGTTCCACCAAGTGA
GCTGCGGGAAGCGCGTCAAGCTCTGCGTGCAGCAGAAGATGGGGGAGGGG
ATCTTCAAGGGCCTGCCCATCTCTCTGAACGGGTGTCGCTTCATTTTGGA
GAACATGGACTGGCAATCGAAGGAGGGGGAGGAGAAGGAAGGGGTGGTGG
GGACGCAGATCCACTTCGGAGAGGTGGGCGAGCACGTGGTGGAGGAGGAG
GACGACGTCTTCATCCTGATCGCCCCCCAGAACGTCGTGGGCGTCTCCAT
CATCCCCCTCCTCGAGGCCATGGCCCGCAAGGCAGGCGACCGTCCCTTCA
TTGTCCTGAACCCGAGCCTCAGGGACCGACCCAGCGCGGGCGACGTGATG
CAAGTGCGTGGCCGGGAGGAGCGGATGGCCTTCGGCAAGACCTTCAAGAC
CGTCTTCGCTTTTGAGACCCAGCACGACAAGGGGATGTTCAAGATCAACG
GTGCTGTGGGGAAGGCCGGGCACGACCAGCCCTGGATCCGCTACGTGCTG
ATAGACAATCAGGAGGGGCTCCAGAATGTGAATAACCGCAGGGAGGTCTA
CGAGCCCGTCCAGGTCACTGAGCGGGAACCGGCAGACTAGGCGCCAAGGG
AGGGCAAGGGGAAGCAAAGGGGCTATTGTGACGAGAACGAGGTATCCGCC
AGCTTTCGTTCGAGTTGTATCATTTCTTTCGTTGAGTGAGGTCAGCCTGT
ACACGATGCAAGGACTGCCTGTGCATTGGTTGTTACCGGACACCGGGCCT
TGTCCCTCCCTCCGATCCGCCGCCTCAACCTCTCTGCATACCATAGACGT
CCAGCCTATACATAATGAAGATGATGTCTTTGTATTGTTCATTACCGGAC
ATTAGACGCGTTCTCGCCCTCACATCCGCCGCCT

protein sequence of rna2580

>rna2580-protein ID=rna2580-protein|Name=rna2580|organism=Nannochloropsis gaditana|type=polypeptide|length=307bp
MAQLQPPLGRSRRRRPAPGETLVPRGFEQVAHPLFLVRREPPPAEKRPTK
MSFAPFEAADEALLLRAPAEGASQRPPERHQEDAISHQGATSQCYGVSCK
SIGSQRGIKRDTGPSDREEKAEDVDTTCAVCLEEYEDPVVVATAHCTHTF
CKKCITCWLSLTRPSAQCPSCPLCKRPVTWLLSLSASSPPVPPFRYVLLA
VGPDMELLERQPWPSPALLQASRQKQLDLFEARERRRRGREGETGRGEQE
KGAKSEKRSNVDAGAGRGVKRRYEPGTNLGRGGNMSESLREELHRVNREI
EGLRRRM

mRNA from alignment at CM002459.1:714301..715766-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2580 ID=rna2580|Name=rna2580|organism=Nannochloropsis gaditana|type=mRNA|length=1466bp|location=Sequence derived from alignment at CM002459.1:714301..715766- (Nannochloropsis gaditana)
CCGGGAAGTGTCTCGCCTTCTTATTCGGAGACTCTCACCAGCTCGATCGA
CACCTGAACATGTTAGGATGGACACATACAGGAGCTCACTGCGCGTGCAA
CGAGGATTGCGGGAATTGACGGGCGCATGAGTCCGACAAGAACCTAAGCA
GCACGCGGTCGACAGGGATGGCACAACTCCAGCCCCCCTTGGGCCGCAGC
AGGCGGAGACGTCCCGCTCCTGGTGAAACCCTGGTTCCACGAGGCTTTGA
GCAGGTAACGTGCACGCGCTGTAAAACTTGCCTTCCTTGTGAGGTTTATG
GGGGAGCTTTCCCCTTCTGCCACGAGCTTGACCTCGGGCCCGCACAAGGC
ATCTCAGGCCTCGGGCGGGTTGATCTGACGCTCCATCACCCCCAACCATC
CTTTAATCAGGTTGCACATCCCCTTTTCCTCGTCCGCCGCGAACCCCCGC
CTGCGGAGAAGCGGCCTACGAAAATGAGCTTCGCCCCATTTGAAGCGGCT
GATGAGGCTCTTCTTCTCCGTGCGCCGGCGGAGGGAGCATCCCAAAGACC
GCCAGAACGACACCAGGAGGATGCAATATCGCACCAAGGCGCTACCTCAC
AGTGTTACGGAGTGTCCTGTAAATCTATAGGCTCACAGCGTGGGATTAAA
CGCGACACCGGGCCCTCAGATAGGGAGGAAAAGGCTGAGGACGTGGACAC
CACCTGTGCTGTGTGTCTGGAGGAATATGAAGACCCCGTGGTCGTGGCCA
CGGCCCACTGCACCCACACTTTCTGCAAGAAGTGCATAACCTGTTGGCTG
TCCCTGACCCGGCCCTCGGCGCAATGCCCCTCCTGCCCCCTCTGCAAGCG
CCCCGTTACCTGGCTGCTCAGCCTGTCCGCCTCCTCCCCGCCCGTCCCTC
CCTTTCGCTACGTGCTTCTGGCCGTGGGCCCTGACATGGAGCTCCTGGAA
CGGCAACCCTGGCCGTCTCCTGCGCTCCTGCAGGCGTCCCGTCAAAAGCA
ACTGGATCTCTTCGAGGCGCGGGAGCGCAGGCGCCGGGGGCGCGAGGGTG
AGACAGGGCGCGGGGAGCAGGAAAAGGGCGCGAAGTCTGAGAAGAGGTCG
AACGTCGACGCTGGAGCCGGACGGGGAGTGAAAAGGAGGTACGAGCCCGG
CACGAATTTGGGGCGTGGCGGCAATATGAGCGAGTCTCTGCGCGAGGAGC
TGCACCGAGTGAATCGAGAAATAGAGGGGTTGAGGCGGCGGATGTGAGGG
CGAGAACGCGTCTAATGTCCGGTAATGAACAATACAAAGACATCATCTTC
ATTATGTATAGGCTGGACGTCTATGGTATGCAGAGAGGTTGAGGCGGCGG
ATCGGAGGGAGGGACAAGGCCCGGTGTCCGGTAACAACCAATGCACAGGC
AGTCCTTGCATCGTGTACAGGCTGACCTCACTCAACGAAAGAAATGATAC
AACTCGAACGAAAGCT

Coding sequence (CDS) from alignment at CM002459.1:714301..715766-

>rna2580 ID=rna2580|Name=rna2580|organism=Nannochloropsis gaditana|type=CDS|length=1848bp|location=Sequence derived from alignment at CM002459.1:714301..715766- (Nannochloropsis gaditana)
GTTGCACATCCCCTTTTCCTCGTCCGCCGCGAACCCCCGCCTGCGGAGAA
GCGGCCTACGAAAATGAGCTTCGCCCCATTTGAAGCGGCTGATGAGGCTC
TTCTTCTCCGTGCGCCGGCGGAGGGAGCATCCCAAAGACCGCCAGAACGA
CACCAGGAGGATGCAATATCGCACCAAGGCGCTACCTCACAGTGTTACGG
AGTGTCCTGTAAATCTATAGGCTCACAGCGTGGGATTAAACGCGACACCG
GGCCCTCAGATAGGGAGGAAAAGGCTGAGGACGTGGACACCACCTGTGCT
GTGTGTCTGGAGGAATATGAAGACCCCGTGGTCGTGGCCACGGCCCACTG
CACCCACACTTTCTGCAAGAAGTGCATAACCTGTTGGCTGTCCCTGACCC
GGCCCTCGGCGCAATGCCCCTCCTGCCCCCTCTGCAAGCGCCCCGTTACC
TGGCTGCTCAGCCTGTCCGCCTCCTCCCCGCCCGTCCCTCCCTTTCGCTA
CGTGCTTCTGGCCGTGGGCCCTGACATGGAGCTCCTGGAACGGCAACCCT
GGCCGTCTCCTGCGCTCCTGCAGGCGTCCCGTCAAAAGCAACTGGATCTC
TTCGAGGCGCGGGAGCGCAGGCGCCGGGGGCGCGAGGGTGAGACAGGGCG
CGGGGAGCAGGAAAAGGGCGCGAAGTCTGAGAAGAGGTCGAACGTCGACG
CTGGAGCCGGACGGGGAGTGAAAAGGAGGTACGAGCCCGGCACGAATTTG
GGGCGTGGCGGCAATATGAGCGAGTCTCTGCGCGAGGAGCTGCACCGAGT
GAATCGAGAAATAGAGGGGTTGAGGCGGCGGATGTGAATGGCACAACTCC
AGCCCCCCTTGGGCCGCAGCAGGCGGAGACGTCCCGCTCCTGGTGAAACC
CTGGTTCCACGAGGCTTTGAGCAGGTTGCACATCCCCTTTTCCTCGTCCG
CCGCGAACCCCCGCCTGCGGAGAAGCGGCCTACGAAAATGAGCTTCGCCC
CATTTGAAGCGGCTGATGAGGCTCTTCTTCTCCGTGCGCCGGCGGAGGGA
GCATCCCAAAGACCGCCAGAACGACACCAGGAGGATGCAATATCGCACCA
AGGCGCTACCTCACAGTGTTACGGAGTGTCCTGTAAATCTATAGGCTCAC
AGCGTGGGATTAAACGCGACACCGGGCCCTCAGATAGGGAGGAAAAGGCT
GAGGACGTGGACACCACCTGTGCTGTGTGTCTGGAGGAATATGAAGACCC
CGTGGTCGTGGCCACGGCCCACTGCACCCACACTTTCTGCAAGAAGTGCA
TAACCTGTTGGCTGTCCCTGACCCGGCCCTCGGCGCAATGCCCCTCCTGC
CCCCTCTGCAAGCGCCCCGTTACCTGGCTGCTCAGCCTGTCCGCCTCCTC
CCCGCCCGTCCCTCCCTTTCGCTACGTGCTTCTGGCCGTGGGCCCTGACA
TGGAGCTCCTGGAACGGCAACCCTGGCCGTCTCCTGCGCTCCTGCAGGCG
TCCCGTCAAAAGCAACTGGATCTCTTCGAGGCGCGGGAGCGCAGGCGCCG
GGGGCGCGAGGGTGAGACAGGGCGCGGGGAGCAGGAAAAGGGCGCGAAGT
CTGAGAAGAGGTCGAACGTCGACGCTGGAGCCGGACGGGGAGTGAAAAGG
AGGTACGAGCCCGGCACGAATTTGGGGCGTGGCGGCAATATGAGCGAGTC
TCTGCGCGAGGAGCTGCACCGAGTGAATCGAGAAATAGAGGGGTTGAGGC
GGCGGATGTGAATGGCACAACTCCAGCCCCCCTTGGGCCGCAGCAGGCGG
AGACGTCCCGCTCCTGGTGAAACCCTGGTTCCACGAGGCTTTGAGCAG

Synonyms

Publications