EWM28114.1, cds2572 (CDS) Nannochloropsis gaditana

Overview
NameEWM28114.1
Unique Namecds2572
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:715513..715599 -
Alignment locationCM002459.1:714520..715356 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28114.1
Producte3 ubiquitin-protein ligase
Orig transcript idgnl|cribi|Naga_100036g2.2534.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:715513..715599 -
CM002459.1supercontigCM002459.1:714520..715356 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
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BLAST of EWM28114.1 vs. NCBI_GenBank
Match: gi|585110458|gb|EWM28114.1| (e3 ubiquitin-protein ligase [Nannochloropsis gaditana])

HSP 1 Score: 620.157 bits (1598), Expect = 0.000e+0
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0 
Query:    1 MAQLQPPLGRSRRRRPAPGETLVPRGFEQVAHPLFLVRREPPPAEKRPTKMSFAPFEAADEALLLRAPAEGASQRPPERHQEDAISHQGATSQCYGVSCKSIGSQRGIKRDTGPSDREEKAEDVDTTCAVCLEEYEDPVVVATAHCTHTFCKKCITCWLSLTRPSAQCPSCPLCKRPVTWLLSLSASSPPVPPFRYVLLAVGPDMELLERQPWPSPALLQASRQKQLDLFEARERRRRGREGETGRGEQEKGAKSEKRSNVDAGAGRGVKRRYEPGTNLGRGGNMSESLREELHRVNREIEGLRRRM 307
            MAQLQPPLGRSRRRRPAPGETLVPRGFEQVAHPLFLVRREPPPAEKRPTKMSFAPFEAADEALLLRAPAEGASQRPPERHQEDAISHQGATSQCYGVSCKSIGSQRGIKRDTGPSDREEKAEDVDTTCAVCLEEYEDPVVVATAHCTHTFCKKCITCWLSLTRPSAQCPSCPLCKRPVTWLLSLSASSPPVPPFRYVLLAVGPDMELLERQPWPSPALLQASRQKQLDLFEARERRRRGREGETGRGEQEKGAKSEKRSNVDAGAGRGVKRRYEPGTNLGRGGNMSESLREELHRVNREIEGLRRRM
Sbjct:    1 MAQLQPPLGRSRRRRPAPGETLVPRGFEQVAHPLFLVRREPPPAEKRPTKMSFAPFEAADEALLLRAPAEGASQRPPERHQEDAISHQGATSQCYGVSCKSIGSQRGIKRDTGPSDREEKAEDVDTTCAVCLEEYEDPVVVATAHCTHTFCKKCITCWLSLTRPSAQCPSCPLCKRPVTWLLSLSASSPPVPPFRYVLLAVGPDMELLERQPWPSPALLQASRQKQLDLFEARERRRRGREGETGRGEQEKGAKSEKRSNVDAGAGRGVKRRYEPGTNLGRGGNMSESLREELHRVNREIEGLRRRM 307
The following BLAST results are available for this feature:
BLAST of EWM28114.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585110458|gb|EWM28114.1|0.000e+0100.00e3 ubiquitin-protein ligase [Nannochloropsis gadit... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2580rna2580Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications