rna2576, rna2576 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2576
Unique Name	rna2576
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3004
Alignment location	CM002459.1:705135..706454 -

Link to JBrowse

Properties


Property Name	Value
Product	uba thif-type nad fad binding fold domain deoxiribonuclease
Orig transcript id	gnl\|cribi\|Naga_100036g6.2543.mrna
Orig protein id	gnl\|cribi\|Naga_100036g6.2543
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:705135..706454 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100036g6	gene2463	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28123.1	cds2568	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2576	rna2576-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:705135..706454-
coding sequence from alignment at CM002459.1:705135..706454-

mRNA sequence

>rna2576 ID=rna2576|Name=rna2576|organism=Nannochloropsis gaditana|type=mRNA|length=3004bp
ATATCGACTTGTTCACGAACGCGATCATCAAGCGACATGAAGGCCGCAGT
GCATGAGGAGGGTGCGGACACTTGAACTGATCGCTTCCTTTCCCCAAACC
AATCGTTCTCACTGACAGAAGACGCCGAGCGACTTTGGCAATTTGGGGTC
GGCAGGGAGAGGCACCGCGCAGATGGGGAAGGCCTCGTCCTCGACCTAGG
TTCAAGTCATTATCCGGAGCAGCTAGCACGCGTACAGGAGAGATTTGGGG
GGAAAAACGGACCCTATTATCGCCCGATTGTTTCATTGTGGGCCAAGAGT
TTGAGGAAGAAGCTGGACAATATGTCTGGCTCCGCCGTGCCCGAAATAAA
CCAGGCGGCCACGACCGAGCAGACAAGAGCCACGGCAGGCGCCCCAGCCG
GCCTGACGAAGGACGGGGATGCGATCAAGCTTTTCGTCGGGCAGATCCCA
AAGGACATGGGGGAGGATGCGCTCCGACCATTTTTTGCTGAGTACGGACC
CATCTTCGAATTGACAGTGATACGTGATAAGACGAGCGGCATGCATCGTG
GCTGTGCGTTCCTCACGTACTGCACGAAGGAGGCCGCACAAGCCGCCTCG
CTGGCTTTACACAATAAGTTGAAGCTTCCGGATGCTCAAAATGCTCTTCA
GGTTCGCCCCGCGGACCTGCACACGGAGAGGGAGAACAAGCTATTCGTAG
GCATGCTGCCCAAGAATGTGGACGAGGGCCTTGTGGAGGGCCTTTTCGCG
CCGTTCGGAAAGATAAAAGAGATCCACATTATTCGTTCCGTCGAGGGCGA
GGGCAAAGGATGCGCTTTTTTGAAATTCGTGGAGAGATCCTCGGCGATCC
AGGCCATCGAGGCCTTGAACGAGAGACAGGTGGTGGAGGGAGCCTCCCGG
CCCATGGTTGTCAGATTCGCAGAGTCGAAGCGTTCGGGGGAGGGGGGTCA
AGGAGCGGGAGTAGGTGGCGGAAGGGGCCGACGGGGAGGGAGCGAAGGCG
GGCGGGGAAGCGGCCCGGGTGGCCCCATGGAAGGCTTGCTGATGGCACCG
ATGATGATGGTGCCGGGGCCTCTGGGTCACTCGCTGCACCCGCCCAACCT
GCCCTTGAGAGGGGGGAGCGAGGGGGGAGCGGCAGGCGGCGGCTTGGGGG
TGGCGGGCTTGAGTCCAACGGGGAGGGGCAAGGGGGGAGGGGGCGGCGGG
GAGGCCCCCGGAGGAGGCTCGTCTCCGTATTCCGGGGCTCCTTACTGGAT
GCTGGGTCCGCACGGGCAGCCGCAGGCCAGCGCCCACTTCCCCTTCCAGG
CGGGGCCCGTGCCGATGGGGATGCTAGGCCTGCCGCACCACCAGTACCTC
CCTTACGGCGCGGTCAGAGCCCCTCCCTACCTGTACTACCCGCCCTACTT
CGGGCCGGGCGGGCCGCAGGGACACGGAGCAGCCGCGGATGGAGGAGGGG
GGAGCAGTGGCAGGGCCGGAGGGGGCGGCCCGGGCTCGCCGTTTGTGTAC
GGGGGCGGTGTGCCGGGCGGGATGAGGGTGAACACGGCCGTGGGGGCTCC
GCACGGGGCGGGGCACGCGGGAGCTTTCGCCTCGAGGGGGGGCGGGGGCG
GGGGGTCCAAGCCCTTGGAGGGCCCCGCGGGGGCGAACCTCTTCATCTAC
CACCTCCCGCACGACCTGACGGACGCGGACCTGGCCACCGCCTTCAACCC
CTTCGGCACCGTGGTCTCGGCCAAGGTCTACGTGGACAAGAACTCGGGGG
AGAGCAAGGGCTTCGGCTTCGTCTCTTACGACTCGCCCCTGGCGGCGGAC
GCGGCCATCAAGGCCATGAACGGTTTTCAGATCGGCACCAAGCGCCTGAA
AGTCCAGCACAAGCGCATCGTCAGCGGGCCCAGCCCCTCCACCCCATCCT
CCATCTCCTCCTCCATCTCCTACCTAACTCAACAGCACGGGCACAGCAGC
ACTCATGGCGGCGGGCCGGGGGCGGGGGGGGGGAGGCGGACACCACCACC
AGGCGTCACATTCCAGCCAAGCGCCCTCGCTCGCCGAGGCGGAGGAGTCC
TCCCCCTCTTCCCCCTCCCCCCCCCCGGCACCCCCCGACCCCGGACCAGC
AGCAAATAAGCGTGGCGGGGGAGCGGGACAAAACGGTGGATGGAAGGCAG
AGGAGGGGCCGGTCTCAGCGATAAGAGAGGGGTCTCAAAAAGCAAGCGCG
TTGCCGTCCAAGGAGGCTGCCGCGCCCAGCGAGAGGAACGCGAGTCTAGA
GGAGGGTGTGGAGAAATTAAAGATATAGGGGCGAAGGAACTACGGGGCAG
GTTGTATAGGAGCAGGCGACACGCATAAGAGCACGACGGAAACAGTGGCA
GCGGTGTCAGGGAAAGAGACGAGGGAAAGCGCTGTTAAACTGTCTCTCAT
GTCGAAGCAGTGGACCGACGCGTCGAAGCCCTAAAGCGCTCATGCGCTCG
CACGTACGCACATTTTTATCAGTACAGCTTTGGGCACTCTCGCGTTGATT
TCCATCATGGTGAGAGGTGCAGCCCGATTTTGTGAGGAGAAAAGCACTGC
TTTAGGTAACGGCGAGTCTTTGCGGATGTGTCGGTGTGAGTGAGTCAAGG
AAGGGCGGGAAAGCGGAGTGGGGTCAGGGCGTCAAGAATACATCGACGTA
TTCGATGGAGGCACGGTGGATCTGAGCGGAGTGTGTCCCTACAGGGCGCA
CTGTTGAGTAGGCAGAAATCTGATGGACGAGGCCTCGTGGCTTTCCCTTG
TTTCAGGTATTGTGAGGGTGACGGCTTGCGGGAGAACTCGTGCTAAATAT
CGGCCTACGGTAAATTCTTTGAGCCCCGCAGATCGGCGTGGCACGGCAGA
CGTGGTGTTTACTTCGCATGGGGTACAAATTCTTTTCATTGAATGAGCGG
GGGATTTAAGAGATTGACAAGACAAGCTATTAAAAATATGGAGAATGACT
TGCTGGAAGGGAGCACATAAAAGAATAAGTCTGAGAAATGTTCGGTCATG
CATT

protein sequence of rna2576

>rna2576-protein ID=rna2576-protein|Name=rna2576|organism=Nannochloropsis gaditana|type=polypeptide|length=301bp
MILVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTAD
QYIHPLYCLMAVEEADWSGLLAISGRDRKEKKPLLQDVSQDTKEVVAVGL
GIHPWKTQSVKSGWEGRLKEALERDPTLIVGEIGLDKAGESGKKSWEEQR
KIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYT
GSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESL
LLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFLRRAL
R

mRNA from alignment at CM002459.1:705135..706454-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2576 ID=rna2576|Name=rna2576|organism=Nannochloropsis gaditana|type=mRNA|length=1320bp|location=Sequence derived from alignment at CM002459.1:705135..706454- (Nannochloropsis gaditana)
ACTTCCCGCCCCCGGCCTGCCGACCGCACCGCTGCAGAGTTTTCTATATT
GCACACTTTCAAAATTGAAAGAAGTTCTTGCGTCAGGAACGGGAGGCATC
CATCGTTGGTAGTTTTGCAGGGCAAGCGGGACGAATGCGTGCGGCGACGG
GTATCTTGCCGTGGCACCCAAGGCGAGTTCTTCCTGGCCCCGACCCGCAG
GAAAGGTACGCGAGGGGAGTTCAGCCTGGCATTCGGTCCCAGCTGATATA
TCGAGGTTTTCAAAACTCACAATGCTTTCGGCAACGACAGCACATGATCC
TTGTCGACACGCATTGCCACATCCACCGATGGGGGAATGGTGAGGTTGCA
GCATCGCCAGCGTATACTAAAAGGGGAAATAATGTCCGGAATCCTACTAG
AATGGCCTCAGGCGGGAACGATTTCGACAATTCAACGGCTGATCAATATA
TTCATCCTTTGTATTGCTTGATGGCCGTTGAGGAAGCGGATTGGTCAGGT
CTACTGGCCATTTCAGGGAGAGACCGAAAAGAGAAGAAGCCGCTCCTGCA
GGACGTGTCTCAAGACACCAAAGAGGTAGTAGCAGTGGGTTTGGGAATTC
ACCCGTGGAAAACACAGAGTGTGAAATCAGGGTGGGAGGGGCGCTTAAAA
GAAGCCTTGGAGCGGGATCCAACCCTTATCGTGGGTGAGATCGGATTGGA
CAAGGCGGGGGAGTCGGGCAAGAAGTCTTGGGAGGAGCAGCGAAAAATAT
TCGAGCTGCAAATGAAACTTGCTGCTGAGCTAAGAAGACCGGTTTCGGTG
CATTGTGTACGGGCATATGGTATCGTGTACGAGTGGCTCAAAGGGCGGTC
CGCGGCCGAGTTGCCCCCTTCAGTGGCATTCCATTCTTACACAGGTTCGC
TCGATATGGCGGGCGCTTTTTTGCGTCTAGAACATCTGCAAGGAAGCGTT
TTTTTTGGCTTCTCAGCCGCTGTATGTCTGCGCTATCCAGCGGCTGAGGC
AAAGCTACGCCAAGTGTTGCCGATCCTGCCAAAGGAAAGTCTGTTGCTCG
AGTCGGACCTGGACGACCGCGAGGCTGTCCCCGGGGCCATGAACACCATC
TGTGACGTGGTTGCCGAGGTCAAGGGCATGGAGCGGAATGTGTTGGCAGA
GGTCACGACGAAGAACGCCGAACGCTTTTTGAGGCGGGCGTTGCGGTAGA
GGTATCAAGGGTGGAAAGTTGTGAATTAGTACATGGTCCTCTTGTAAAGC
GCACGCTTGGTGCACCTCATCAAATGGATAACCAAACCTGTTCGATTAAA
AAATGAAACGGCTGAAAACT

Coding sequence (CDS) from alignment at CM002459.1:705135..706454-

>rna2576 ID=rna2576|Name=rna2576|organism=Nannochloropsis gaditana|type=CDS|length=906bp|location=Sequence derived from alignment at CM002459.1:705135..706454- (Nannochloropsis gaditana)
ATGATCCTTGTCGACACGCATTGCCACATCCACCGATGGGGGAATGGTGA
GGTTGCAGCATCGCCAGCGTATACTAAAAGGGGAAATAATGTCCGGAATC
CTACTAGAATGGCCTCAGGCGGGAACGATTTCGACAATTCAACGGCTGAT
CAATATATTCATCCTTTGTATTGCTTGATGGCCGTTGAGGAAGCGGATTG
GTCAGGTCTACTGGCCATTTCAGGGAGAGACCGAAAAGAGAAGAAGCCGC
TCCTGCAGGACGTGTCTCAAGACACCAAAGAGGTAGTAGCAGTGGGTTTG
GGAATTCACCCGTGGAAAACACAGAGTGTGAAATCAGGGTGGGAGGGGCG
CTTAAAAGAAGCCTTGGAGCGGGATCCAACCCTTATCGTGGGTGAGATCG
GATTGGACAAGGCGGGGGAGTCGGGCAAGAAGTCTTGGGAGGAGCAGCGA
AAAATATTCGAGCTGCAAATGAAACTTGCTGCTGAGCTAAGAAGACCGGT
TTCGGTGCATTGTGTACGGGCATATGGTATCGTGTACGAGTGGCTCAAAG
GGCGGTCCGCGGCCGAGTTGCCCCCTTCAGTGGCATTCCATTCTTACACA
GGTTCGCTCGATATGGCGGGCGCTTTTTTGCGTCTAGAACATCTGCAAGG
AAGCGTTTTTTTTGGCTTCTCAGCCGCTGTATGTCTGCGCTATCCAGCGG
CTGAGGCAAAGCTACGCCAAGTGTTGCCGATCCTGCCAAAGGAAAGTCTG
TTGCTCGAGTCGGACCTGGACGACCGCGAGGCTGTCCCCGGGGCCATGAA
CACCATCTGTGACGTGGTTGCCGAGGTCAAGGGCATGGAGCGGAATGTGT
TGGCAGAGGTCACGACGAAGAACGCCGAACGCTTTTTGAGGCGGGCGTTG
CGGTAG

Synonyms

Publications