EWM28123.1, cds2568 (CDS) Nannochloropsis gaditana

Overview
NameEWM28123.1
Unique Namecds2568
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:705256..706161 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28123.1
Productuba thif-type nad fad binding fold domain deoxiribonuclease
Orig transcript idgnl|cribi|Naga_100036g6.2543.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:705256..706161 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0016888endodeoxyribonuclease activity, producing 5'-phosphomonoesters
Vocabulary: INTERPRO
TermDefinition
IPR001130TatD_family
Homology
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|585110467|gb|EWM28123.1| (uba thif-type nad fad binding fold domain deoxiribonuclease [Nannochloropsis gaditana])

HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0
Query:    1 MILVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSGWEGRLKEALERDPTLIVGEIGLDKAGESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFLRRALR 301
            MILVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSGWEGRLKEALERDPTLIVGEIGLDKAGESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFLRRALR
Sbjct:    1 MILVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSGWEGRLKEALERDPTLIVGEIGLDKAGESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFLRRALR 301          
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|553185496|ref|XP_005854256.1| (hypothetical protein NGA_2033200, partial [Nannochloropsis gaditana CCMP526] >gi|422294804|gb|EKU22104.1| hypothetical protein NGA_2033200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 319.701 bits (818), Expect = 4.697e-108
Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 0
Query:  129 IVGEIGLDKAGESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAE 286
            IVGEIGLDKA ESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAE
Sbjct:    1 IVGEIGLDKARESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAE 158          
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|1183371505|gb|ORX97329.1| (Metallo-dependent hydrolase [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 138.658 bits (348), Expect = 5.212e-36
Identity = 80/219 (36.53%), Postives = 120/219 (54.79%), Query Frame = 0
Query:   85 LQDVSQDTKEVVAVGLGIHPWKTQSVKSG--WEGRLKEALERDPTLIVGEIGLDKAGESGKKS----WEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVF-FGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFL 296
            L  V+ +  + V  G G+HPW  + +K    WE +LK+ LE+    ++GEIGLDK     K         Q +IF+ Q  LAA L R VSVHCV+++G + +  +     E PP +  HSY+GS ++A AFL+L    G+ F F FS  V     +   KL   L ++P+  +LLESD  +   V G M  IC+++ ++ G E   +AE+T KN++ F 
Sbjct:   24 LGKVATENPDRVIPGFGVHPWYAEGMKESDLWEEKLKQYLEKHENAVLGEIGLDKIATDPKTGERYHLPTQLEIFQRQFALAASLNRVVSVHCVQSHGHLLDCFRQLKPEEFPPKIMLHSYSGSHEIAKAFLKLPKKVGARFYFSFSKLVN----SKTKKLVDSLQVIPRNRVLLESDAHESLKVDGVMEEICNIIGDIWGCEGAEVAEITYKNSKEFF 238          
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|470512631|ref|XP_004352517.1| (Cut9 interacting protein Scn1, putative [Acanthamoeba castellanii str. Neff] >gi|440802101|gb|ELR23040.1| Cut9 interacting protein Scn1, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 137.502 bits (345), Expect = 1.524e-34
Identity = 79/247 (31.98%), Postives = 128/247 (51.82%), Query Frame = 0
Query:   58 CLMAVEEADWSGLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSGWEGRLKEALERDPTLIVGEIGLDKAG---ESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYE----WLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVF-FGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFL 296
            CL+ V + DW               P+++++     + V     +HPW      S W   L+  L R+P  IVGEIGLD+A    ++G+   + Q ++FE Q +LA  L+RPVS+HCVRA+G  +E     LK      LPPS+  HSY G+  M  +   ++   GS F F FS  + +R P    K  +V+  +P++ LL+E+D +   ++   +  +C++VA+ +G      A +T +NA+R  
Sbjct:   49 CLIGVRDIDW---------------PVVEELHSRYGDKVRAAFAVHPWYAHRRGSDWLEELEALLRRNPAAIVGEIGLDRAATTPDTGRCEHQHQLEVFEKQFRLAGRLQRPVSIHCVRAFGQFFEAVQQILKEDGKMALPPSIIMHSYGGTAGMMDSLTTMKQGIGSRFYFSFSPVINMRSP----KTVEVIKHIPQDRLLIETDQNTPTSIEDDIMEMCEIVAKARGWSVEQAARITLENAQRVF 276          
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|551678956|ref|XP_005842230.1| (hypothetical protein GUITHDRAFT_99033 [Guillardia theta CCMP2712] >gi|428186400|gb|EKX55250.1| hypothetical protein GUITHDRAFT_99033 [Guillardia theta CCMP2712])

HSP 1 Score: 135.576 bits (340), Expect = 2.157e-32
Identity = 89/305 (29.18%), Postives = 147/305 (48.20%), Query Frame = 0
Query:   13 WGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKT-------------------QSVKSGWEGRLKEALERDPTLIVGEIGLD-KAGESGKKS--WEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERF 295
            W   E  + P  + R  +  N   +     D  +    +       LM    +DWS +  ++ +   +  P                 G HPW                     + V+  W+  L+  L + P+  VGEIGLD +    G  S  +E+Q+++F+ Q+++A E+ RPVS+HCV+AYG +++ L  R + ELPP++  HS+ G + M  +F++++      +FGFS+   LR P    K  QV+  +P + LLLESDL+D + V GA+  +  V+A+ KG   +  A+ T +NAE F
Sbjct:  277 WTANEGDSMPDPSLRLWDAHNHLHLTPDSRDLLDLLQPEEDQVCLSLMGTRVSDWSAIADLAAQHASKLVP---------------SFGFHPWYALVCCRVHRDGTERATRWAHERVEEDWKQELRRLLHQHPSACVGEIGLDGQWIPPGLDSVQYEKQKEVFQAQLEIATEMSRPVSLHCVKAYGDMFDML--RFSDELPPAIYMHSFGGKVGMLNSFVKMKKYGDRFYFGFSSFTNLRSP----KTSQVIASVPDDKLLLESDLEDAKEVHGALLRMLQVIADAKGWTLDYAAKKTWENAETF 560          
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|551611016|ref|XP_005786603.1| (hypothetical protein EMIHUDRAFT_420943 [Emiliania huxleyi CCMP1516] >gi|485639905|gb|EOD34174.1| hypothetical protein EMIHUDRAFT_420943 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 128.642 bits (322), Expect = 2.255e-31
Identity = 96/305 (31.48%), Postives = 137/305 (44.92%), Query Frame = 0
Query:    1 MILVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSGWEGRLKEALERDPTLIVGEIGLDKAGES----GKKS--WEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAA---EAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFL 296
            ++LVDTH H+H+            +  G  VR                 D Y      ++AV EA W  +LA      +                   GLG+HPW+   V  GWE RL+  L++ P  +VGEIGL K   S    G K+  W +Q ++F  Q+ LAAEL+RP SVHCV+A+  +   L       LPP+V  HS++GS    G  L        ++FGFS  V +    A   +  L   +  +P+  LL+ESD  D  +   A+     +VA+ +G      A  TT+N  RFL
Sbjct:   29 LLLVDTHNHLHQ------------SAGGGAVRR---------------CDSY----EAVLAVAEACWDSVLARCAEGPRSLP----------------GLGVHPWQAHEVAEGWEARLRALLQQHPRALVGEIGLCKCARSLRGPGAKARVWPQQLRVFRTQLALAAELQRPTSVHCVKAHSSLVAALDDLDV--LPPAVGLHSFSGSAHQIGQLLS-TRAGPRLYFGFSHTVNVAMGGAAEPQPALLDAIRAVPERKLLVESDCADERSATLALPLALRLVADARGWTLERAARTTTENGLRFL 283          
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|523541607|ref|XP_003081320.2| (TatD-related DNase (ISS), partial [Ostreococcus tauri])

HSP 1 Score: 128.642 bits (322), Expect = 2.725e-31
Identity = 93/296 (31.42%), Postives = 131/296 (44.26%), Query Frame = 0
Query:    3 LVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAI-SGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSG---WEGRLKEALERDPTLIVGEIGLDKAG--ESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNA 292
            + D HCH H  G   V  S             +R+A  G                 +M    +DW   LAI SG D                  V +  G+HPW     K+G   W   L+ ALE  P  +VGEIGLDK       +  ++ Q   F+ Q+ LA +LRRPV VH V+A   + +    R A+ELPP +  HS+ GS D     ++++      +FGFS+ + LR P    K R V+  +P E LLLESDL D       +  +  ++A++KG      A  T +NA
Sbjct:   73 IFDAHCHWHLGGEHSVVRSLC-----------SRLAGAG-----------------MMTTRPSDWDAALAIRSGNDNLTIN-------------VPIAYGVHPWWAYLEKNGKDAWMEDLRRALESTPNSVVGEIGLDKVAVPPDAEPDYDNQLDCFKRQLALATDLRRPVVVHSVKATRDMTDAF--RLASELPPRIFMHSFGGSEDFLKQLIKMKKFGDRFYFGFSSVINLRSP----KTRSVIEAVPDERLLLESDLCDPTHAEDELRIMLAIIADIKGWTVQEAARRTRENA 321          
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|693498552|emb|CEF99148.1| (TatD family, partial [Ostreococcus tauri])

HSP 1 Score: 131.724 bits (330), Expect = 3.732e-31
Identity = 95/300 (31.67%), Postives = 133/300 (44.33%), Query Frame = 0
Query:    3 LVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAI-SGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSG---WEGRLKEALERDPTLIVGEIGLDKAG--ESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFL 296
            + D HCH H  G   V  S             +R+A  G                 +M    +DW   LAI SG D                  V +  G+HPW     K+G   W   L+ ALE  P  +VGEIGLDK       +  ++ Q   F+ Q+ LA +LRRPV VH V+A   + +    R A+ELPP +  HS+ GS D     ++++      +FGFS+ + LR P    K R V+  +P E LLLESDL D       +  +  ++A++KG      A  T +NA RF 
Sbjct:  281 IFDAHCHWHLGGEHSVVRSLC-----------SRLAGAG-----------------MMTTRPSDWDAALAIRSGNDNLTIN-------------VPIAYGVHPWWAYLEKNGKDAWMEDLRRALESTPNSVVGEIGLDKVAVPPDAEPDYDNQLDCFKRQLALATDLRRPVVVHSVKATRDMTDAF--RLASELPPRIFMHSFGGSEDFLKQLIKMKKFGDRFYFGFSSVINLRSP----KTRSVIEAVPDERLLLESDLCDPTHAEDELRIMLAIIADIKGWTVKEAARRTRENAARFF 533          
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|1199293711|gb|OUS48793.1| (TatD-related DNase, partial [Ostreococcus tauri])

HSP 1 Score: 127.102 bits (318), Expect = 6.989e-31
Identity = 92/296 (31.08%), Postives = 131/296 (44.26%), Query Frame = 0
Query:    3 LVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAI-SGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSG---WEGRLKEALERDPTLIVGEIGLDKAG--ESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNA 292
            + D HCH H  G   V  S             +R+A  G                 +M    +DW   LAI SG D                  V +  G+HPW     K+G   W   L+ ALE  P  +VGEIGLDK       +  ++ Q   F+ Q+ LA +LRRPV VH V+A   + +    R A+ELPP +  HS+ GS D     ++++      +FGFS+ + LR P    K R V+  +P + LLLESDL D       +  +  ++A++KG      A  T +NA
Sbjct:   66 IFDAHCHWHLGGEHSVVRSLC-----------SRLAGAG-----------------MMTTRPSDWDAALAIRSGNDNLTIN-------------VPIAYGVHPWWAYLEKNGKDAWMEDLRRALESTPNSVVGEIGLDKVAVPPDAEPDYDNQLDCFKRQLALATDLRRPVVVHSVKATRDMTDAF--RLASELPPRIFMHSFGGSEDFLKQLIKMKKFGDRFYFGFSSVINLRSP----KTRSVIEAVPDDRLLLESDLCDPTHAEDELRIMLAIIADIKGWTVKEAARRTRENA 314          
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|1183449595|gb|ORY73711.1| (Metallo-dependent hydrolase [Neocallimastix californiae])

HSP 1 Score: 122.865 bits (307), Expect = 1.593e-29
Identity = 72/240 (30.00%), Postives = 122/240 (50.83%), Query Frame = 0
Query:   69 GLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPW---KTQSVKSGWEGRLKEALERDPTLIVGEIGLDKA--GESGKK--SWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGR---SAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMER-NVLAEVTTKNAERFLR 297
            G++  S  D      ++  +  D+   V  G GIHPW    T      W+ +L+  L + P   +GE GLDK     + KK  S   Q  IFE Q +LAA+ +RP+ +H V+  G ++E++K +   S   +PP + FHSY GS D+  + L L  ++  ++FG S  V  R  + E  L+    ++PK+ +++E+D  + + VP  +  I D++     ++  + L ++T  NA  F  
Sbjct:   52 GMMGTSIEDSIRMANMIDLLDDDSSIKVYYGFGIHPWFCENTVKTHPDWKEQLENLLIKYPKATIGECGLDKVARNRTTKKIFSMPIQTDIFEFQFQLAAKYKRPIVIHSVKTVGKIFEYIKKQLSISIDNIPPKIMFHSYCGSPDITKSLLNLSPIRERLYFGLSYLVNSRIKSNEENLK----LIPKDRIMIETDFHEIDDVPEFIGKIHDLLRSFDCLKSVDDLYKLTYDNAYNFFN 287          
The following BLAST results are available for this feature:
BLAST of EWM28123.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110467|gb|EWM28123.1|0.000e+0100.00uba thif-type nad fad binding fold domain deoxirib... [more]
gi|553185496|ref|XP_005854256.1|4.697e-10899.37hypothetical protein NGA_2033200, partial [Nannoch... [more]
gi|1183371505|gb|ORX97329.1|5.212e-3636.53Metallo-dependent hydrolase [Basidiobolus meristos... [more]
gi|470512631|ref|XP_004352517.1|1.524e-3431.98Cut9 interacting protein Scn1, putative [Acanthamo... [more]
gi|551678956|ref|XP_005842230.1|2.157e-3229.18hypothetical protein GUITHDRAFT_99033 [Guillardia ... [more]
gi|551611016|ref|XP_005786603.1|2.255e-3131.48hypothetical protein EMIHUDRAFT_420943 [Emiliania ... [more]
gi|523541607|ref|XP_003081320.2|2.725e-3131.42TatD-related DNase (ISS), partial [Ostreococcus ta... [more]
gi|693498552|emb|CEF99148.1|3.732e-3131.67TatD family, partial [Ostreococcus tauri][more]
gi|1199293711|gb|OUS48793.1|6.989e-3131.08TatD-related DNase, partial [Ostreococcus tauri][more]
gi|1183449595|gb|ORY73711.1|1.593e-2930.00Metallo-dependent hydrolase [Neocallimastix califo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2576rna2576Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications