EWM28123.1, cds2568 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|585110467|gb|EWM28123.1| (uba thif-type nad fad binding fold domain deoxiribonuclease [Nannochloropsis gaditana]) HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0 Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0
Query: 1 MILVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSGWEGRLKEALERDPTLIVGEIGLDKAGESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFLRRALR 301
MILVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSGWEGRLKEALERDPTLIVGEIGLDKAGESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFLRRALR
Sbjct: 1 MILVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSGWEGRLKEALERDPTLIVGEIGLDKAGESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFLRRALR 301
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|553185496|ref|XP_005854256.1| (hypothetical protein NGA_2033200, partial [Nannochloropsis gaditana CCMP526] >gi|422294804|gb|EKU22104.1| hypothetical protein NGA_2033200, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 319.701 bits (818), Expect = 4.697e-108 Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 0
Query: 129 IVGEIGLDKAGESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAE 286
IVGEIGLDKA ESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAE
Sbjct: 1 IVGEIGLDKARESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAE 158
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|1183371505|gb|ORX97329.1| (Metallo-dependent hydrolase [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 138.658 bits (348), Expect = 5.212e-36 Identity = 80/219 (36.53%), Postives = 120/219 (54.79%), Query Frame = 0
Query: 85 LQDVSQDTKEVVAVGLGIHPWKTQSVKSG--WEGRLKEALERDPTLIVGEIGLDKAGESGKKS----WEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVF-FGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFL 296
L V+ + + V G G+HPW + +K WE +LK+ LE+ ++GEIGLDK K Q +IF+ Q LAA L R VSVHCV+++G + + + E PP + HSY+GS ++A AFL+L G+ F F FS V + KL L ++P+ +LLESD + V G M IC+++ ++ G E +AE+T KN++ F
Sbjct: 24 LGKVATENPDRVIPGFGVHPWYAEGMKESDLWEEKLKQYLEKHENAVLGEIGLDKIATDPKTGERYHLPTQLEIFQRQFALAASLNRVVSVHCVQSHGHLLDCFRQLKPEEFPPKIMLHSYSGSHEIAKAFLKLPKKVGARFYFSFSKLVN----SKTKKLVDSLQVIPRNRVLLESDAHESLKVDGVMEEICNIIGDIWGCEGAEVAEITYKNSKEFF 238
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|470512631|ref|XP_004352517.1| (Cut9 interacting protein Scn1, putative [Acanthamoeba castellanii str. Neff] >gi|440802101|gb|ELR23040.1| Cut9 interacting protein Scn1, putative [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 137.502 bits (345), Expect = 1.524e-34 Identity = 79/247 (31.98%), Postives = 128/247 (51.82%), Query Frame = 0
Query: 58 CLMAVEEADWSGLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSGWEGRLKEALERDPTLIVGEIGLDKAG---ESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYE----WLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVF-FGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFL 296
CL+ V + DW P+++++ + V +HPW S W L+ L R+P IVGEIGLD+A ++G+ + Q ++FE Q +LA L+RPVS+HCVRA+G +E LK LPPS+ HSY G+ M + ++ GS F F FS + +R P K +V+ +P++ LL+E+D + ++ + +C++VA+ +G A +T +NA+R
Sbjct: 49 CLIGVRDIDW---------------PVVEELHSRYGDKVRAAFAVHPWYAHRRGSDWLEELEALLRRNPAAIVGEIGLDRAATTPDTGRCEHQHQLEVFEKQFRLAGRLQRPVSIHCVRAFGQFFEAVQQILKEDGKMALPPSIIMHSYGGTAGMMDSLTTMKQGIGSRFYFSFSPVINMRSP----KTVEVIKHIPQDRLLIETDQNTPTSIEDDIMEMCEIVAKARGWSVEQAARITLENAQRVF 276
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|551678956|ref|XP_005842230.1| (hypothetical protein GUITHDRAFT_99033 [Guillardia theta CCMP2712] >gi|428186400|gb|EKX55250.1| hypothetical protein GUITHDRAFT_99033 [Guillardia theta CCMP2712]) HSP 1 Score: 135.576 bits (340), Expect = 2.157e-32 Identity = 89/305 (29.18%), Postives = 147/305 (48.20%), Query Frame = 0
Query: 13 WGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKT-------------------QSVKSGWEGRLKEALERDPTLIVGEIGLD-KAGESGKKS--WEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERF 295
W E + P + R + N + D + + LM +DWS + ++ + + P G HPW + V+ W+ L+ L + P+ VGEIGLD + G S +E+Q+++F+ Q+++A E+ RPVS+HCV+AYG +++ L R + ELPP++ HS+ G + M +F++++ +FGFS+ LR P K QV+ +P + LLLESDL+D + V GA+ + V+A+ KG + A+ T +NAE F
Sbjct: 277 WTANEGDSMPDPSLRLWDAHNHLHLTPDSRDLLDLLQPEEDQVCLSLMGTRVSDWSAIADLAAQHASKLVP---------------SFGFHPWYALVCCRVHRDGTERATRWAHERVEEDWKQELRRLLHQHPSACVGEIGLDGQWIPPGLDSVQYEKQKEVFQAQLEIATEMSRPVSLHCVKAYGDMFDML--RFSDELPPAIYMHSFGGKVGMLNSFVKMKKYGDRFYFGFSSFTNLRSP----KTSQVIASVPDDKLLLESDLEDAKEVHGALLRMLQVIADAKGWTLDYAAKKTWENAETF 560
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|551611016|ref|XP_005786603.1| (hypothetical protein EMIHUDRAFT_420943 [Emiliania huxleyi CCMP1516] >gi|485639905|gb|EOD34174.1| hypothetical protein EMIHUDRAFT_420943 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 128.642 bits (322), Expect = 2.255e-31 Identity = 96/305 (31.48%), Postives = 137/305 (44.92%), Query Frame = 0
Query: 1 MILVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSGWEGRLKEALERDPTLIVGEIGLDKAGES----GKKS--WEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAA---EAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFL 296
++LVDTH H+H+ + G VR D Y ++AV EA W +LA + GLG+HPW+ V GWE RL+ L++ P +VGEIGL K S G K+ W +Q ++F Q+ LAAEL+RP SVHCV+A+ + L LPP+V HS++GS G L ++FGFS V + A + L + +P+ LL+ESD D + A+ +VA+ +G A TT+N RFL
Sbjct: 29 LLLVDTHNHLHQ------------SAGGGAVRR---------------CDSY----EAVLAVAEACWDSVLARCAEGPRSLP----------------GLGVHPWQAHEVAEGWEARLRALLQQHPRALVGEIGLCKCARSLRGPGAKARVWPQQLRVFRTQLALAAELQRPTSVHCVKAHSSLVAALDDLDV--LPPAVGLHSFSGSAHQIGQLLS-TRAGPRLYFGFSHTVNVAMGGAAEPQPALLDAIRAVPERKLLVESDCADERSATLALPLALRLVADARGWTLERAARTTTENGLRFL 283
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|523541607|ref|XP_003081320.2| (TatD-related DNase (ISS), partial [Ostreococcus tauri]) HSP 1 Score: 128.642 bits (322), Expect = 2.725e-31 Identity = 93/296 (31.42%), Postives = 131/296 (44.26%), Query Frame = 0
Query: 3 LVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAI-SGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSG---WEGRLKEALERDPTLIVGEIGLDKAG--ESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNA 292
+ D HCH H G V S +R+A G +M +DW LAI SG D V + G+HPW K+G W L+ ALE P +VGEIGLDK + ++ Q F+ Q+ LA +LRRPV VH V+A + + R A+ELPP + HS+ GS D ++++ +FGFS+ + LR P K R V+ +P E LLLESDL D + + ++A++KG A T +NA
Sbjct: 73 IFDAHCHWHLGGEHSVVRSLC-----------SRLAGAG-----------------MMTTRPSDWDAALAIRSGNDNLTIN-------------VPIAYGVHPWWAYLEKNGKDAWMEDLRRALESTPNSVVGEIGLDKVAVPPDAEPDYDNQLDCFKRQLALATDLRRPVVVHSVKATRDMTDAF--RLASELPPRIFMHSFGGSEDFLKQLIKMKKFGDRFYFGFSSVINLRSP----KTRSVIEAVPDERLLLESDLCDPTHAEDELRIMLAIIADIKGWTVQEAARRTRENA 321
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|693498552|emb|CEF99148.1| (TatD family, partial [Ostreococcus tauri]) HSP 1 Score: 131.724 bits (330), Expect = 3.732e-31 Identity = 95/300 (31.67%), Postives = 133/300 (44.33%), Query Frame = 0
Query: 3 LVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAI-SGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSG---WEGRLKEALERDPTLIVGEIGLDKAG--ESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFL 296
+ D HCH H G V S +R+A G +M +DW LAI SG D V + G+HPW K+G W L+ ALE P +VGEIGLDK + ++ Q F+ Q+ LA +LRRPV VH V+A + + R A+ELPP + HS+ GS D ++++ +FGFS+ + LR P K R V+ +P E LLLESDL D + + ++A++KG A T +NA RF
Sbjct: 281 IFDAHCHWHLGGEHSVVRSLC-----------SRLAGAG-----------------MMTTRPSDWDAALAIRSGNDNLTIN-------------VPIAYGVHPWWAYLEKNGKDAWMEDLRRALESTPNSVVGEIGLDKVAVPPDAEPDYDNQLDCFKRQLALATDLRRPVVVHSVKATRDMTDAF--RLASELPPRIFMHSFGGSEDFLKQLIKMKKFGDRFYFGFSSVINLRSP----KTRSVIEAVPDERLLLESDLCDPTHAEDELRIMLAIIADIKGWTVKEAARRTRENAARFF 533
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|1199293711|gb|OUS48793.1| (TatD-related DNase, partial [Ostreococcus tauri]) HSP 1 Score: 127.102 bits (318), Expect = 6.989e-31 Identity = 92/296 (31.08%), Postives = 131/296 (44.26%), Query Frame = 0
Query: 3 LVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHPLYCLMAVEEADWSGLLAI-SGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSG---WEGRLKEALERDPTLIVGEIGLDKAG--ESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGRSAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNA 292
+ D HCH H G V S +R+A G +M +DW LAI SG D V + G+HPW K+G W L+ ALE P +VGEIGLDK + ++ Q F+ Q+ LA +LRRPV VH V+A + + R A+ELPP + HS+ GS D ++++ +FGFS+ + LR P K R V+ +P + LLLESDL D + + ++A++KG A T +NA
Sbjct: 66 IFDAHCHWHLGGEHSVVRSLC-----------SRLAGAG-----------------MMTTRPSDWDAALAIRSGNDNLTIN-------------VPIAYGVHPWWAYLEKNGKDAWMEDLRRALESTPNSVVGEIGLDKVAVPPDAEPDYDNQLDCFKRQLALATDLRRPVVVHSVKATRDMTDAF--RLASELPPRIFMHSFGGSEDFLKQLIKMKKFGDRFYFGFSSVINLRSP----KTRSVIEAVPDDRLLLESDLCDPTHAEDELRIMLAIIADIKGWTVKEAARRTRENA 314
BLAST of EWM28123.1 vs. NCBI_GenBank
Match: gi|1183449595|gb|ORY73711.1| (Metallo-dependent hydrolase [Neocallimastix californiae]) HSP 1 Score: 122.865 bits (307), Expect = 1.593e-29 Identity = 72/240 (30.00%), Postives = 122/240 (50.83%), Query Frame = 0
Query: 69 GLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPW---KTQSVKSGWEGRLKEALERDPTLIVGEIGLDKA--GESGKK--SWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGR---SAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMER-NVLAEVTTKNAERFLR 297
G++ S D ++ + D+ V G GIHPW T W+ +L+ L + P +GE GLDK + KK S Q IFE Q +LAA+ +RP+ +H V+ G ++E++K + S +PP + FHSY GS D+ + L L ++ ++FG S V R + E L+ ++PK+ +++E+D + + VP + I D++ ++ + L ++T NA F
Sbjct: 52 GMMGTSIEDSIRMANMIDLLDDDSSIKVYYGFGIHPWFCENTVKTHPDWKEQLENLLIKYPKATIGECGLDKVARNRTTKKIFSMPIQTDIFEFQFQLAAKYKRPIVIHSVKTVGKIFEYIKKQLSISIDNIPPKIMFHSYCGSPDITKSLLNLSPIRERLYFGLSYLVNSRIKSNEENLK----LIPKDRIMIETDFHEIDDVPEFIGKIHDLLRSFDCLKSVDDLYKLTYDNAYNFFN 287 The following BLAST results are available for this feature:
BLAST of EWM28123.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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