rna2575, rna2575 (mRNA) Nannochloropsis gaditana

Overview
Namerna2575
Unique Namerna2575
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1084
Alignment locationCM002459.1:699669..702998 +

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Properties
Property NameValue
Productrna binding protein
Orig transcript idgnl|cribi|Naga_100036g7.2526.mrna
Orig protein idgnl|cribi|Naga_100036g7.2526
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:699669..702998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100036g7gene2462Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2575rna2575-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28106.1cds2567Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2575 ID=rna2575|Name=rna2575|organism=Nannochloropsis gaditana|type=mRNA|length=1084bp
TATCAAGCAGACGACCTTGACGTGGAGTGAACTCAATGTTGGAGGGAAAA
CAAATTTCAACACGCGCCAAAGAGGATACGAACCGCGCGCGCCGGCGTCC
GGGAATGCCGGCTTTCTCTCACGTTCGGGCGTGCGGCCGCTCTTGTCCCG
TTGACTAGCCAGGCAGGCGAAGGGATTGGTGCTGAAATGTCATTGCCTTT
GGACAGCACCCCGTTGCCTTTCATGATTTATTTTGGAAACCAATTCTTTG
GGTTGGCACGAGCGTTCACAGATCCGTTGGTGTGCGCCGTCTAGATTTGC
CCTTGTTCGACCCGCAGTGTCTTTGTAAGTGTGTTAGGGCTCATTCGTTC
CCTCTCCCGTATGCCTCTTTGCTCGACTCAGAACAGATTAAACATGCTAC
CGACGGTACATTCCAACGTTTCTAAGCTGTCGAGCATTTCTAGGAGTACC
GCCCTAAGGGTTTTAGTGACGAACACAGGTACGGCGACGATGGCATGCGC
TCGTCGCTTCTCCACATCGACGCCTCTGGCAGCAGAAGGCGATGATCCAT
CTGCTGCAGTCAATGATGCCCACGCATCCCCCCCGCCTCTAAATCCACGC
TTGGATAGTCTAAATAGGGCCTACGCAACAGGGAGGCGCAAGACAAGTGT
GGCTCGTGTGTGGCTTCTAGCGGGAGACGGTCGAATCGTGGTGAATGGGA
AAGAAGTCCATGAATACTTTGGGCGGACGGCGTACAGGGACAAGCTGATT
GAGCCGTTCGTGGTGACGGAGAGCGTCGGCCAATTCGACGTCAAGTGCAC
TGTGAAAGGGGGGGGCACCACCGGGCAGGTAGGCGCCATTTCGTTGGGGA
TATCGCGAGCCCTCGAAGTATGGGACCCGGCGCACCGGCCCCCTTTGGCC
AAGGAGAGTCTGTTTACGCGGGACTCGCGGGCGGTCGAGTCCAAAAAATC
CGGTCAGCCCAAGGCCAGGAAGAAGGATCAGTGGGTCAAACGCTAAGCGA
GAGACGTCTAAAAGCAGGTGTTCGATACTGTCGAGTATGCTGGGATTTAA
GAAGAAGGAAATCACGAGCGCGCGAAAAAGCTGA
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protein sequence of rna2575

>rna2575-protein ID=rna2575-protein|Name=rna2575|organism=Nannochloropsis gaditana|type=polypeptide|length=595bp
MSGSAVPEINQAATTEQTRATAGAPAGLTKDGDAIKLFVGQIPKDMGEDA
LRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKL
KLPDAQNALQVRPADLHTERENKLFVGMLPKNVDEGLVEGLFAPFGKIKE
IHIIRSVEGEGKGCAFLKFVERSSAIQAIEALNERQVVEGASRPMVVRFA
ESKRSGEGGQGAGVGGGRGRRGGSEGGRGSGPGGPMEGLLMAPMMMVPGP
LGHSLHPPNLPLRGGSEGGAAGGGLGVAGLSPTGRGKGGGGGGEAPGGGS
SPYSGAPYWMLGPHGQPQASAHFPFQAGPVPMGMLGLPHHQYLPYGAVRA
PPYLYYPPYFGPGGPQGHGAAADGGGGSSGRAGGGGPGSPFVYGGGVPGG
MRVNTAVGAPHGAGHAGAFASRGGGGGGSKPLEGPAGANLFIYHLPHDLT
DADLATAFNPFGTVVSAKVYVDKNSGESKGFGFVSYDSPLAADAAIKAMN
GFQIGTKRLKVQHKRIVSGPSPSTPSSISSSISYLTQQHGHSSTHGGGPG
AGGGRRTPPPGVTFQPSALARRGGGVLPLFPLPPPGTPRPRTSSK
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mRNA from alignment at CM002459.1:699669..702998+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2575 ID=rna2575|Name=rna2575|organism=Nannochloropsis gaditana|type=mRNA|length=3330bp|location=Sequence derived from alignment at CM002459.1:699669..702998+ (Nannochloropsis gaditana)
ATATCGACTTGTTCACGAACGCGATCATCAAGCGACATGAAGGCCGCAGT GCATGAGGAGGGTGCGGACACTTGAACTGatcgcttcctttccccaaaCC AATCGTTCTCACTGACAGAAGACGCCGAGCGACTTTGGCAATTTGGGGTC GGCAGGGAGAGGCACCGCGCAGATGGGgaaggcctcgtcctcgacctAGG TTCAAGTCATTATCCGGAGCAGCTAGCACGCGTACAGGAGAGATTTGGGG GGAAAAACGGACCCTATTATCGCCCGATTGTTTCATTGTGGGCCAAGAGT TTGAGGAAGAAGCTGGACAATATGTCTGGCTCCGCCGTGCCCGAAATAAA CCAGGCGGCCACGACCGAGCAGACAAGAGCCACGGCAGGCGCCCCAGCCG GCCTGACGAAGGACGGGGATGCGATCAAGCTTTTCGTCGGGCAGATCCCA AAGGAcatgggggaggatgcgCTCCGACCATTTTTTGCTGAGTACGGACC CATCTTCGAATTGACAGTGATACGTGATAAGACGAGCGGCATGCATCGTG GCTGTGCGTTCCTCACGTACTGCACGAAGGAGGCCGCACAAGCCGCCTCG CTGGCTTTACACAATAAGTTGAAGCTTCCGGATGCTCAAAATGCTCTTCA GGTGAGTGAATTTGGAGAGGACACTAGAGGACAATCTGTTTCGGCGGGTG TATCTGTATATTAGCAGTGGGAAACTGAGCTTCGTTTGCTCCTCACCCCA AAAGGCTGCAATTCCGTCTTTGAAGTATTTTGTTTTGTGACTTCCCTTGT TGTTTTCTCCGAAGTCTATCGATAATCACGTCCCTGCACGATCGCCTAGG TTCGCCCCGCGGACCTGCacacggagagggagaacaAGCTATTCGTAGGC ATGCTGCCCAAGAATGTGGACGAGGGCCTTGTGGAGGGCCTTTTCGCGCC GTTCGGAAAGATAAAAGAGATCCACATTATTCGTTCCGTCGAGGTAGTAG TAGGCAAGGATGGGGAATGcgccgggaagaaggggtggcGAAGCTGTGTC CTCAGCGTGCCTCTTGGAGTCGGCGATGCATCTCTTAcattcatttcccc tccctcggttgCTGTACACAGGGCGAGGGCAAAGGATGCGCTTTTTTGAA ATTCGTGGAGAGATCCTCGGCGATCCAGGCCATCGAGGCCTTGAACGAGA gacaggtggtggagggagcctCCCGGCCCATGGTTGTCAGATTCGCAGAG TCGAAGCgttcgggggaggggggtcaAGGAGCGGGAGTAGGTGGCGGAAG GggccgacggggagggagcgaaggcgggcggggaagcgGCCCGGGTGGCC CCATGGAAGGCTTGCTGATGGCAccgatgatgatggtgcCGGGGCCTCTG GGTCACTCGCTGCACCCGCCCAACCTGCCCTTGAgaggggggagcgaggg gggagcggCAGGCGGCGGCTTGGGGGTGGCGGGCTTGAGTCCAacgggga ggggcaaggggggagggggcggcggggaggcccCCGGAGGAGGCTCGTCT CCGTATTCCGGGGCTCCTTACTGGATGCTGGGTCCGCACGGGCAGCCGCA GGCCAGCGcccacttccccttccaggcGGGGCCCGTGCCGATGGGGATGC TAGGCCTGCCGCACCACCAGTACCTCCCTTACGGCGCGGTCAGAgcccct ccctacctgtaCTACCCGCCCTACTTCGGGCCGGGCGGGCCGCAGGGACA CGGAGCAGCcgcggatggaggaggggggagcagtggcagggccggagggg gcggccCGGGCTCGCCGTTTGTGTACGGGGGCGGTGTGCCGGGCGGGATG AGGGTGAACACGGCCGTGGGGGCTCCGCACGGGGCGGGGCACGCGGGAGC TTTCGCCtcgagggggggcgggggcggggggtccAAGCCCTTGGAGGGCC CCGCGGGGGCGAACCTCTTCATCTACCACCTCCCGCACGACCTGACGGAC GCGGACCTGGCCACCGCCTTCAACCCCTTCGGCACCGTGGTCTCGGCCAA GGTCTACGTGGACAAGAACTcgggggagagcaagggctTCGGCTTCGTCT CTTACGACTCGCCCCTGGCGGCGGACGCGGCCATCAAGGCCATGAACGGT TTTCAGATCGGCACCAAGCGCCTGAAAGTCCAGCACAAGCGCATCGTCAG CGGgcccagcccctccaccccatcctccatctcctcctccatctcctacC TAACTCAACAGCACGGGCACAGCAGCACTCATGGCGgcgggccgggggcg gggggggggaggcggacaccaccaccaggcgTCACATTCCAGCCAAGCGC CCTCGCtcgccgaggcggaggagtcctccccctcttccccctcccccccc ccggcaccccCCGACCCCGGACCAGCAGCAAATAAGcgtggcgggggagc ggGACAAAACGGTGGAtggaaggcagaggaggggccggtCTCAGCGATAA GAGAGGGGTCTCAAAAAGCAAGCGCGTTGCCGTCCAAGGAGGCTGCCGCG CCCAGCGAGAGGAACGCGAGTCTAGAGGAGGGTGTGGAGAAATTAAAGAT ATAGGGGCGAAGGAACTACGGGGCAGGTTGTATAGGAGCAGGCGACACGC ATAAGAGCACGACGGAAACAGTGGCAGCGGTGTCAGGGAAAGAGACGAGG GAAAGCGCTGTTAAACTGTCTCTCATGTCGAAGCAGTGGACCGACGCGTC GAAGCCCTAAAGCGCTCATGCGCTCGCACGTACGCACATTTTTATCAGTA CAGCTTTGGGCACTCTCGCGTTGATTTCCATCATGGTGAGAGGTGCAGCC CGATTTTGTGAGGAGAAAAGCACTGCTTTAGGTAACGGCGAGTCTTTGCG GATGTGTCGGTGTGAGTGAGtcaaggaagggcgggaaagcggagTGGGGT CAGGGCGTCAAGAATACATCGACGTATTCGATGGAGGCACGGTGGATCTG AGCGGAGTGTGTCCCTACAGGGCGCACTGTTGAGTAGGCAGAAATCTGAT GGACGAGGCCTCGTGGCTTTCCCTTGTTTCAGGTATTGTGAGGGTGACGG CTTGCGGGAGAACTCGTGCTAAATATCGGCCTACGGTAAATTCTTTGAGC CCCGCAGATCGGCGTGGCACGGCAGACGTGGTGTTTACTTCGCATGGGGT ACAAATTCTTTTCATTGAATGAGCGGGGGATTTAAGAGATTGACAAGACA AGCTATTAAAAATATGGAGAATGACTTGCTGGAAGGGAGCACATAAAAGA ATAAGTCTGAGAAATGTTCGGTCATGCATT
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Coding sequence (CDS) from alignment at CM002459.1:699669..702998+

>rna2575 ID=rna2575|Name=rna2575|organism=Nannochloropsis gaditana|type=CDS|length=5364bp|location=Sequence derived from alignment at CM002459.1:699669..702998+ (Nannochloropsis gaditana)
ATGTCTGGCTCCGCCGTGCCCGAAATAAACCAGGCGGCCACGACCGAGCA
GACAAGAGCCACGGCAGGCGCCCCAGCCGGCCTGACGAAGGACGGGGATG
CGATCAAGCTTTTCGTCGGGCAGATCCCAAAGGAcatgggggaggatgcg
CTCCGACCATTTTTTGCTGAGTACGGACCCATCTTCGAATTGACAGTGAT
ACGTGATAAGACGAGCGGCATGCATCGTGGCTGTGCGTTCCTCACGTACT
GCACGAAGGAGGCCGCACAAGCCGCCTCGCTGGCTTTACACAATAAGTTG
AAGCTTCCGGATGCTCAAAATGCTCTTCAGGTTCGCCCCGCGGACCTGCa
cacggagagggagaacaAGCTATTCGTAGGCATGCTGCCCAAGAATGTGG
ACGAGGGCCTTGTGGAGGGCCTTTTCGCGCCGTTCGGAAAGATAAAAGAG
ATCCACATTATTCGTTCCGTCGAGGGCGAGGGCAAAGGATGCGCTTTTTT
GAAATTCGTGGAGAGATCCTCGGCGATCCAGGCCATCGAGGCCTTGAACG
AGAgacaggtggtggagggagcctCCCGGCCCATGGTTGTCAGATTCGCA
GAGTCGAAGCgttcgggggaggggggtcaAGGAGCGGGAGTAGGTGGCGG
AAGGggccgacggggagggagcgaaggcgggcggggaagcgGCCCGGGTG
GCCCCATGGAAGGCTTGCTGATGGCAccgatgatgatggtgcCGGGGCCT
CTGGGTCACTCGCTGCACCCGCCCAACCTGCCCTTGAgaggggggagcga
ggggggagcggCAGGCGGCGGCTTGGGGGTGGCGGGCTTGAGTCCAacgg
ggaggggcaaggggggagggggcggcggggaggcccCCGGAGGAGGCTCG
TCTCCGTATTCCGGGGCTCCTTACTGGATGCTGGGTCCGCACGGGCAGCC
GCAGGCCAGCGcccacttccccttccaggcGGGGCCCGTGCCGATGGGGA
TGCTAGGCCTGCCGCACCACCAGTACCTCCCTTACGGCGCGGTCAGAgcc
cctccctacctgtaCTACCCGCCCTACTTCGGGCCGGGCGGGCCGCAGGG
ACACGGAGCAGCcgcggatggaggaggggggagcagtggcagggccggag
ggggcggccCGGGCTCGCCGTTTGTGTACGGGGGCGGTGTGCCGGGCGGG
ATGAGGGTGAACACGGCCGTGGGGGCTCCGCACGGGGCGGGGCACGCGGG
AGCTTTCGCCtcgagggggggcgggggcggggggtccAAGCCCTTGGAGG
GCCCCGCGGGGGCGAACCTCTTCATCTACCACCTCCCGCACGACCTGACG
GACGCGGACCTGGCCACCGCCTTCAACCCCTTCGGCACCGTGGTCTCGGC
CAAGGTCTACGTGGACAAGAACTcgggggagagcaagggctTCGGCTTCG
TCTCTTACGACTCGCCCCTGGCGGCGGACGCGGCCATCAAGGCCATGAAC
GGTTTTCAGATCGGCACCAAGCGCCTGAAAGTCCAGCACAAGCGCATCGT
CAGCGGgcccagcccctccaccccatcctccatctcctcctccatctcct
acCTAACTCAACAGCACGGGCACAGCAGCACTCATGGCGgcgggccgggg
gcggggggggggaggcggacaccaccaccaggcgTCACATTCCAGCCAAG
CGCCCTCGCtcgccgaggcggaggagtcctccccctcttccccctccccc
cccccggcaccccCCGACCCCGGACCAGCAGCAAATAAATGTCTGGCTCC
GCCGTGCCCGAAATAAACCAGGCGGCCACGACCGAGCAGACAAGAGCCAC
GGCAGGCGCCCCAGCCGGCCTGACGAAGGACGGGGATGCGATCAAGCTTT
TCGTCGGGCAGATCCCAAAGGAcatgggggaggatgcgCTCCGACCATTT
TTTGCTGAGTACGGACCCATCTTCGAATTGACAGTGATACGTGATAAGAC
GAGCGGCATGCATCGTGGCTGTGCGTTCCTCACGTACTGCACGAAGGAGG
CCGCACAAGCCGCCTCGCTGGCTTTACACAATAAGTTGAAGCTTCCGGAT
GCTCAAAATGCTCTTCAGGTTCGCCCCGCGGACCTGCacacggagaggga
gaacaAGCTATTCGTAGGCATGCTGCCCAAGAATGTGGACGAGGGCCTTG
TGGAGGGCCTTTTCGCGCCGTTCGGAAAGATAAAAGAGATCCACATTATT
CGTTCCGTCGAGGGCGAGGGCAAAGGATGCGCTTTTTTGAAATTCGTGGA
GAGATCCTCGGCGATCCAGGCCATCGAGGCCTTGAACGAGAgacaggtgg
tggagggagcctCCCGGCCCATGGTTGTCAGATTCGCAGAGTCGAAGCgt
tcgggggaggggggtcaAGGAGCGGGAGTAGGTGGCGGAAGGggccgacg
gggagggagcgaaggcgggcggggaagcgGCCCGGGTGGCCCCATGGAAG
GCTTGCTGATGGCAccgatgatgatggtgcCGGGGCCTCTGGGTCACTCG
CTGCACCCGCCCAACCTGCCCTTGAgaggggggagcgaggggggagcggC
AGGCGGCGGCTTGGGGGTGGCGGGCTTGAGTCCAacggggaggggcaagg
ggggagggggcggcggggaggcccCCGGAGGAGGCTCGTCTCCGTATTCC
GGGGCTCCTTACTGGATGCTGGGTCCGCACGGGCAGCCGCAGGCCAGCGc
ccacttccccttccaggcGGGGCCCGTGCCGATGGGGATGCTAGGCCTGC
CGCACCACCAGTACCTCCCTTACGGCGCGGTCAGAgcccctccctacctg
taCTACCCGCCCTACTTCGGGCCGGGCGGGCCGCAGGGACACGGAGCAGC
cgcggatggaggaggggggagcagtggcagggccggagggggcggccCGG
GCTCGCCGTTTGTGTACGGGGGCGGTGTGCCGGGCGGGATGAGGGTGAAC
ACGGCCGTGGGGGCTCCGCACGGGGCGGGGCACGCGGGAGCTTTCGCCtc
gagggggggcgggggcggggggtccAAGCCCTTGGAGGGCCCCGCGGGGG
CGAACCTCTTCATCTACCACCTCCCGCACGACCTGACGGACGCGGACCTG
GCCACCGCCTTCAACCCCTTCGGCACCGTGGTCTCGGCCAAGGTCTACGT
GGACAAGAACTcgggggagagcaagggctTCGGCTTCGTCTCTTACGACT
CGCCCCTGGCGGCGGACGCGGCCATCAAGGCCATGAACGGTTTTCAGATC
GGCACCAAGCGCCTGAAAGTCCAGCACAAGCGCATCGTCAGCGGgcccag
cccctccaccccatcctccatctcctcctccatctcctacCTAACTCAAC
AGCACGGGCACAGCAGCACTCATGGCGgcgggccgggggcgggggggggg
aggcggacaccaccaccaggcgTCACATTCCAGCCAAGCGCCCTCGCtcg
ccgaggcggaggagtcctccccctcttccccctccccccccccggcaccc
cCCGACCCCGGACCAGCAGCAAATAAATGTCTGGCTCCGCCGTGCCCGAA
ATAAACCAGGCGGCCACGACCGAGCAGACAAGAGCCACGGCAGGCGCCCC
AGCCGGCCTGACGAAGGACGGGGATGCGATCAAGCTTTTCGTCGGGCAGA
TCCCAAAGGAcatgggggaggatgcgCTCCGACCATTTTTTGCTGAGTAC
GGACCCATCTTCGAATTGACAGTGATACGTGATAAGACGAGCGGCATGCA
TCGTGGCTGTGCGTTCCTCACGTACTGCACGAAGGAGGCCGCACAAGCCG
CCTCGCTGGCTTTACACAATAAGTTGAAGCTTCCGGATGCTCAAAATGCT
CTTCAGGTTCGCCCCGCGGACCTGCacacggagagggagaacaAGCTATT
CGTAGGCATGCTGCCCAAGAATGTGGACGAGGGCCTTGTGGAGGGCCTTT
TCGCGCCGTTCGGAAAGATAAAAGAGATCCACATTATTCGTTCCGTCGAG
GGCGAGGGCAAAGGATGCGCTTTTTTGAAATTCGTGGAGAGATCCTCGGC
GATCCAGGCCATCGAGGCCTTGAACGAGAgacaggtggtggagggagcct
CCCGGCCCATGGTTGTCAGATTCGCAGAGTCGAAGCgttcgggggagggg
ggtcaAGGAGCGGGAGTAGGTGGCGGAAGGggccgacggggagggagcga
aggcgggcggggaagcgGCCCGGGTGGCCCCATGGAAGGCTTGCTGATGG
CAccgatgatgatggtgcCGGGGCCTCTGGGTCACTCGCTGCACCCGCCC
AACCTGCCCTTGAgaggggggagcgaggggggagcggCAGGCGGCGGCTT
GGGGGTGGCGGGCTTGAGTCCAacggggaggggcaaggggggagggggcg
gcggggaggcccCCGGAGGAGGCTCGTCTCCGTATTCCGGGGCTCCTTAC
TGGATGCTGGGTCCGCACGGGCAGCCGCAGGCCAGCGcccacttcccctt
ccaggcGGGGCCCGTGCCGATGGGGATGCTAGGCCTGCCGCACCACCAGT
ACCTCCCTTACGGCGCGGTCAGAgcccctccctacctgtaCTACCCGCCC
TACTTCGGGCCGGGCGGGCCGCAGGGACACGGAGCAGCcgcggatggagg
aggggggagcagtggcagggccggagggggcggccCGGGCTCGCCGTTTG
TGTACGGGGGCGGTGTGCCGGGCGGGATGAGGGTGAACACGGCCGTGGGG
GCTCCGCACGGGGCGGGGCACGCGGGAGCTTTCGCCtcgagggggggcgg
gggcggggggtccAAGCCCTTGGAGGGCCCCGCGGGGGCGAACCTCTTCA
TCTACCACCTCCCGCACGACCTGACGGACGCGGACCTGGCCACCGCCTTC
AACCCCTTCGGCACCGTGGTCTCGGCCAAGGTCTACGTGGACAAGAACTc
gggggagagcaagggctTCGGCTTCGTCTCTTACGACTCGCCCCTGGCGG
CGGACGCGGCCATCAAGGCCATGAACGGTTTTCAGATCGGCACCAAGCGC
CTGAAAGTCCAGCACAAGCGCATCGTCAGCGGgcccagcccctccacccc
atcctccatctcctcctccatctcctacCTAACTCAACAGCACGGGCACA
GCAGCACTCATGGCGgcgggccgggggcggggggggggaggcggacacca
ccaccaggcgTCACATTCCAGCCAAGCGCCCTCGCtcgccgaggcggagg
agtcctccccctcttccccctccccccccccggcaccccCCGACCCCGGA
CCAGCAGCAAATAA
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