EWM28106.1, cds2567 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM28106.1
Unique Name	cds2567
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002459.1:699990..700319 +
Alignment location	CM002459.1:700518..700661 +
Alignment location	CM002459.1:700790..702103 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM28106.1
Product	rna binding protein
Orig transcript id	gnl\|cribi\|Naga_100036g7.2526.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:699990..700319 +
CM002459.1	supercontig	CM002459.1:700518..700661 +
CM002459.1	supercontig	CM002459.1:700790..702103 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005575	cellular_component

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait
IPR000504	RRM_dom
IPR002343	Hud_Sxl_RNA

Homology

[Close]

BLAST of EWM28106.1 vs. NCBI_GenBank
Match: gi|585110450|gb|EWM28106.1| (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1166.37 bits (3016), Expect = 0.000e+0
Identity = 595/595 (100.00%), Postives = 595/595 (100.00%), Query Frame = 0

Query:    1 MSGSAVPEINQAATTEQTRATAGAPAGLTKDGDAIKLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLHTERENKLFVGMLPKNVDEGLVEGLFAPFGKIKEIHIIRSVEGEGKGCAFLKFVERSSAIQAIEALNERQVVEGASRPMVVRFAESKRSGEGGQGAGVGGGRGRRGGSEGGRGSGPGGPMEGLLMAPMMMVPGPLGHSLHPPNLPLRGGSEGGAAGGGLGVAGLSPTGRGKGGGGGGEAPGGGSSPYSGAPYWMLGPHGQPQASAHFPFQAGPVPMGMLGLPHHQYLPYGAVRAPPYLYYPPYFGPGGPQGHGAAADGGGGSSGRAGGGGPGSPFVYGGGVPGGMRVNTAVGAPHGAGHAGAFASRGGGGGGSKPLEGPAGANLFIYHLPHDLTDADLATAFNPFGTVVSAKVYVDKNSGESKGFGFVSYDSPLAADAAIKAMNGFQIGTKRLKVQHKRIVSGPSPSTPSSISSSISYLTQQHGHSSTHGGGPGAGGGRRTPPPGVTFQPSALARRGGGVLPLFPLPPPGTPRPRTSSK 595
            MSGSAVPEINQAATTEQTRATAGAPAGLTKDGDAIKLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLHTERENKLFVGMLPKNVDEGLVEGLFAPFGKIKEIHIIRSVEGEGKGCAFLKFVERSSAIQAIEALNERQVVEGASRPMVVRFAESKRSGEGGQGAGVGGGRGRRGGSEGGRGSGPGGPMEGLLMAPMMMVPGPLGHSLHPPNLPLRGGSEGGAAGGGLGVAGLSPTGRGKGGGGGGEAPGGGSSPYSGAPYWMLGPHGQPQASAHFPFQAGPVPMGMLGLPHHQYLPYGAVRAPPYLYYPPYFGPGGPQGHGAAADGGGGSSGRAGGGGPGSPFVYGGGVPGGMRVNTAVGAPHGAGHAGAFASRGGGGGGSKPLEGPAGANLFIYHLPHDLTDADLATAFNPFGTVVSAKVYVDKNSGESKGFGFVSYDSPLAADAAIKAMNGFQIGTKRLKVQHKRIVSGPSPSTPSSISSSISYLTQQHGHSSTHGGGPGAGGGRRTPPPGVTFQPSALARRGGGVLPLFPLPPPGTPRPRTSSK
Sbjct:    1 MSGSAVPEINQAATTEQTRATAGAPAGLTKDGDAIKLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLHTERENKLFVGMLPKNVDEGLVEGLFAPFGKIKEIHIIRSVEGEGKGCAFLKFVERSSAIQAIEALNERQVVEGASRPMVVRFAESKRSGEGGQGAGVGGGRGRRGGSEGGRGSGPGGPMEGLLMAPMMMVPGPLGHSLHPPNLPLRGGSEGGAAGGGLGVAGLSPTGRGKGGGGGGEAPGGGSSPYSGAPYWMLGPHGQPQASAHFPFQAGPVPMGMLGLPHHQYLPYGAVRAPPYLYYPPYFGPGGPQGHGAAADGGGGSSGRAGGGGPGSPFVYGGGVPGGMRVNTAVGAPHGAGHAGAFASRGGGGGGSKPLEGPAGANLFIYHLPHDLTDADLATAFNPFGTVVSAKVYVDKNSGESKGFGFVSYDSPLAADAAIKAMNGFQIGTKRLKVQHKRIVSGPSPSTPSSISSSISYLTQQHGHSSTHGGGPGAGGGRRTPPPGVTFQPSALARRGGGVLPLFPLPPPGTPRPRTSSK 595

[Close]

BLAST of EWM28106.1 vs. NCBI_GenBank
Match: gi|298710156|emb|CBJ31866.1| (trinucleotide repeat containing 4, isoform CRA_d [Ectocarpus siliculosus])

HSP 1 Score: 233.417 bits (594), Expect = 4.452e-66
Identity = 118/212 (55.66%), Postives = 149/212 (70.28%), Query Frame = 0

Query:   25 PAGLT-KDGDAIKLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLHTERENKLFVGMLPKNVDEGLVEGLFAPFGKIKEIHIIRSVEGEGKGCAFLKFVERSSAIQAIEALNERQVVEGASRPMVVRFAESKRSGEGGQGAGVGGGRGRRG---GSEGGRGSGP 232
            PAGL  KD DAIKLFVGQIPK M E+ LRP F E+G IF+L VIRDK SG+HRGCAFLTYC + +A AA  ALH + +L   QN LQVRPA+   E+ENKLFVGM PK+ +E  +  +FAP+G ++EIH+IR+ +G  KGCAF+K+  R SA+ AIEAL+E+  ++G  RP+VV+FA++KR        G     GR G   GS G  GSGP
Sbjct:   33 PAGLIHKDSDAIKLFVGQIPKHMEEEDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARVSADAAIAALHGQRRLDRGQNPLQVRPAEGQAEQENKLFVGMAPKSANEDEIRAVFAPYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIEALHEQYTMQGGPRPLVVKFADNKR--------GTQAAAGRLGGLIGSPGRHGSGP 236

HSP 2 Score: 141.354 bits (355), Expect = 1.495e-32
Identity = 67/87 (77.01%), Postives = 75/87 (86.21%), Query Frame = 0

Query:  429 SKPLEGPAGANLFIYHLPHDLTDADLATAFNPFGTVVSAKVYVDKNSGESKGFGFVSYDSPLAADAAIKAMNGFQIGTKRLKVQHKR 515
            ++P EGP GANLFIYHLP DL+DADLATAF PFG V+SAKVY+D+ SGESKGFGFVSY  P  A+AAI  MNGFQIG+KRLKVQHKR
Sbjct:  361 TRPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYSLPSHAEAAIAQMNGFQIGSKRLKVQHKR 447

[Close]

BLAST of EWM28106.1 vs. NCBI_GenBank
Match: gi|698816374|ref|XP_009841216.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574103821|gb|ETV69359.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 190.66 bits (483), Expect = 9.541e-52
Identity = 88/176 (50.00%), Postives = 128/176 (72.73%), Query Frame = 0

Query:   33 DAIKLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLH--TERENKLFVGMLPKNVDEGLVEGLFAPFGKIKEIHIIRSV-EGEGKGCAFLKFVERSSAIQAIEALNERQVVEGASRPMVVRFAESKRS 205
            DA+KLFVGQ+P+ M ED LRP    +GP++++ +IRDK SG HRGCAF+TYCT++AA+AA   LHN++ LP + N LQVRPA+      +E+KLF+GM+PK+ DE  + G+F   G+I+EI+I+R    G+ KGCAFLKF +R +A  AI+ +N    ++  + P+VV+FA+S+R 
Sbjct:   41 DAVKLFVGQVPRTMDEDELRPILENFGPLYDIVIIRDKISGAHRGCAFVTYCTRDAAEAAIDTLHNQVTLPMSPNPLQVRPAEGQAGASQEHKLFIGMIPKHADEADIRGVFDVHGEIEEIYILRHPGTGQSKGCAFLKFKDRHAASAAIDTINGAITMDRGTAPLVVKFADSRRQ 216

[Close]

BLAST of EWM28106.1 vs. NCBI_GenBank
Match: gi|1173960045|gb|OQS06212.1| (CUG-BP- and ETR-3-like factor [Thraustotheca clavata])

HSP 1 Score: 192.971 bits (489), Expect = 1.517e-51
Identity = 89/175 (50.86%), Postives = 126/175 (72.00%), Query Frame = 0

Query:   33 DAIKLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLH--TERENKLFVGMLPKNVDEGLVEGLFAPFGKIKEIHIIRS-VEGEGKGCAFLKFVERSSAIQAIEALNERQVVEGASRPMVVRFAESKR 204
            DA+KLFVGQ+P+ M E  LRP    +GP++++ +IRDK SG HRGCAF+T+CT++AA AA   LHN++ LP + N LQVRPA+      +E+KLF+GM+PK+ DE  +  +FAP G I+EI+I+R    G+ KGCAFLK+ +R SA  AIEA N    ++  + P+VV+FA+S+R
Sbjct:   34 DAVKLFVGQVPRSMEEADLRPILEAFGPLYDIVIIRDKVSGAHRGCAFVTFCTRDAADAAIETLHNQVTLPMSSNPLQVRPAEGQAGASQEHKLFIGMIPKHADEASIREVFAPHGAIEEIYILRHPATGQSKGCAFLKYKDRHSASSAIEAFNGIYTMDRGTAPLVVKFADSRR 208

HSP 2 Score: 159.458 bits (402), Expect = 2.393e-39
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 0

Query:  424 GGGGGSKPLEGPAGANLFIYHLPHDLTDADLATAFNPFGTVVSAKVYVDKNSGESKGFGFVSYDSPLAADAAIKAMNGFQIGTKRLKVQHKRI 516
             G   +  LEGPAGANLFIYHLPHDLTDADLATAF PFGTV+SAKV++DKN+GESKGFGFVSYDS  AADAAI +MNGFQIG+KRLKVQHKR+
Sbjct:  318 SGARAATQLEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVFMDKNTGESKGFGFVSYDSVQAADAAIASMNGFQIGSKRLKVQHKRV 410

[Close]

BLAST of EWM28106.1 vs. NCBI_GenBank
Match: gi|1173951461|gb|OQR99335.1| (CUG-BP- and ETR-3-like factor [Achlya hypogyna])

HSP 1 Score: 193.356 bits (490), Expect = 3.527e-51
Identity = 90/175 (51.43%), Postives = 126/175 (72.00%), Query Frame = 0

Query:   33 DAIKLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLH--TERENKLFVGMLPKNVDEGLVEGLFAPFGKIKEIHIIRS-VEGEGKGCAFLKFVERSSAIQAIEALNERQVVEGASRPMVVRFAESKR 204
            DA+KLFVGQ+P+ M E  LRP    +GP++++ +IRDK SG HRGCAF+T+CT+ AA+AA   LHN++ LP + N LQVRPA+      +E+KLF+GM+PK+ DE  +  +FAP G I+EI+I+R    G+ KGCAFLKF +R SA  AIEA N    ++  + P+VV+FA+S+R
Sbjct:   90 DAVKLFVGQVPRTMEEADLRPILEAFGPLYDIVIIRDKVSGTHRGCAFVTFCTRAAAEAAIETLHNQVTLPMSSNPLQVRPAEGQAGASQEHKLFIGMIPKHADESSIREVFAPHGAIEEIYILRHPATGQSKGCAFLKFKDRHSASTAIEAFNGTYTMDRGTAPLVVKFADSRR 264

HSP 2 Score: 146.362 bits (368), Expect = 2.953e-34
Identity = 74/85 (87.06%), Postives = 81/85 (95.29%), Query Frame = 0

Query:  432 LEGPAGANLFIYHLPHDLTDADLATAFNPFGTVVSAKVYVDKNSGESKGFGFVSYDSPLAADAAIKAMNGFQIGTKRLKVQHKRI 516
            LEGPAGANLFIYHLPHDLTDADLATAF PFGTV+SAKV++DKN+GESKGFGFVSYDS  AADAAI +MNGFQIG+KRLKVQHKR+
Sbjct:  382 LEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVFMDKNTGESKGFGFVSYDSVAAADAAIASMNGFQIGSKRLKVQHKRV 466

[Close]

BLAST of EWM28106.1 vs. NCBI_GenBank
Match: gi|698816372|ref|XP_009841215.1| (hypothetical protein H257_14965 [Aphanomyces astaci] >gi|574103820|gb|ETV69358.1| hypothetical protein H257_14965 [Aphanomyces astaci])

HSP 1 Score: 191.815 bits (486), Expect = 5.810e-51
Identity = 88/176 (50.00%), Postives = 128/176 (72.73%), Query Frame = 0

Query:   33 DAIKLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLH--TERENKLFVGMLPKNVDEGLVEGLFAPFGKIKEIHIIRSV-EGEGKGCAFLKFVERSSAIQAIEALNERQVVEGASRPMVVRFAESKRS 205
            DA+KLFVGQ+P+ M ED LRP    +GP++++ +IRDK SG HRGCAF+TYCT++AA+AA   LHN++ LP + N LQVRPA+      +E+KLF+GM+PK+ DE  + G+F   G+I+EI+I+R    G+ KGCAFLKF +R +A  AI+ +N    ++  + P+VV+FA+S+R 
Sbjct:   41 DAVKLFVGQVPRTMDEDELRPILENFGPLYDIVIIRDKISGAHRGCAFVTYCTRDAAEAAIDTLHNQVTLPMSPNPLQVRPAEGQAGASQEHKLFIGMIPKHADEADIRGVFDVHGEIEEIYILRHPGTGQSKGCAFLKFKDRHAASAAIDTINGAITMDRGTAPLVVKFADSRRQ 216

HSP 2 Score: 141.739 bits (356), Expect = 7.053e-33
Identity = 75/92 (81.52%), Postives = 82/92 (89.13%), Query Frame = 0

Query:  425 GGGGSKPLEGPAGANLFIYHLPHDLTDADLATAFNPFGTVVSAKVYVDKNSGESKGFGFVSYDSPLAADAAIKAMNGFQIGTKRLKVQHKRI 516
            G   S  +EGP GANLFIYHLPHDLTDADLATAF PFGTV+SAKVY+DKN+GESKGFGFVSYDS  AADAAI +MNGFQIG+KRLKVQHKR+
Sbjct:  326 GARASAQVEGPVGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKNTGESKGFGFVSYDSAQAADAAIASMNGFQIGSKRLKVQHKRV 417

[Close]

BLAST of EWM28106.1 vs. NCBI_GenBank
Match: gi|813125127|ref|XP_012196612.1| (hypothetical protein SPRG_02658 [Saprolegnia parasitica CBS 223.65] >gi|641539145|gb|KDO32966.1| hypothetical protein SPRG_02658 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 188.348 bits (477), Expect = 7.651e-51
Identity = 87/175 (49.71%), Postives = 127/175 (72.57%), Query Frame = 0

Query:   33 DAIKLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLH--TERENKLFVGMLPKNVDEGLVEGLFAPFGKIKEIHIIRS-VEGEGKGCAFLKFVERSSAIQAIEALNERQVVEGASRPMVVRFAESKR 204
            DA+KLFVGQ+P++M E ALRP    +GP++++ +IRDK SG HRGCAF+T+C+++AA AA   LHN++ LP + N LQVRPA+      +E+KLF+GM+PK+ DE  +  +FA  G I+EI+I+R    G+ KGCAFLK+ +R +A  AI+A N    +E  + P+VV+FA+S+R
Sbjct:   37 DAVKLFVGQVPRNMEEAALRPILEAFGPLYDIVIIRDKVSGTHRGCAFVTFCSRDAADAAIETLHNQVTLPMSSNPLQVRPAEGQAGASQEHKLFIGMIPKHADESSIREVFASHGPIEEIYILRHPATGQSKGCAFLKYKDRHAASAAIDAYNGTYTMERGTAPLVVKFADSRR 211

[Close]

BLAST of EWM28106.1 vs. NCBI_GenBank
Match: gi|673041277|ref|XP_008874599.1| (hypothetical protein H310_10113 [Aphanomyces invadans] >gi|574469809|gb|ETV96822.1| hypothetical protein H310_10113 [Aphanomyces invadans])

HSP 1 Score: 189.504 bits (480), Expect = 3.590e-50
Identity = 86/176 (48.86%), Postives = 125/176 (71.02%), Query Frame = 0

Query:   33 DAIKLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLH--TERENKLFVGMLPKNVDEGLVEGLFAPFGKIKEIHIIRSV-EGEGKGCAFLKFVERSSAIQAIEALNERQVVEGASRPMVVRFAESKRS 205
            DA+KLFVGQ+P+ M ED LRP    +GP++++ +IRDK SG HRGCAF+TYC++ AA+AA   LHN++ LP + N LQVRPA+      +E+KLF+GM+PK+ DE  +  +F   G I+EI+I+R    G+ KGCAFLKF +R +A  AI+ +N    ++  + P+VV+FA+S+R 
Sbjct:   40 DAVKLFVGQVPRTMDEDELRPILERFGPLYDIVIIRDKISGAHRGCAFVTYCSRNAAEAAIDTLHNQVTLPSSPNPLQVRPAEGQAGASQEHKLFIGMIPKHADEADIRSVFQVHGDIEEIYILRHPGTGQSKGCAFLKFKDRHAASTAIDTINGAVTMDRGTAPLVVKFADSRRQ 215

HSP 2 Score: 132.494 bits (332), Expect = 1.096e-29
Identity = 93/181 (51.38%), Postives = 105/181 (58.01%), Query Frame = 0

Query:  336 GLPHHQYLPYGAVRAPPYLYYPPYFGPGGPQGHGAAADGGGGSSGRAGGGGPGSPFVYGGGVPGGMRVNTAVGAPHGAGHAGAFASRGGGGGGSKPLEGPAGANLFIYHLPHDLTDADLATAFNPFGTVVSAKVYVDKNSGESKGFGFVSYDSPLAADAAIKAMNGFQIGTKRLKVQHKRI 516
            GLP     P  A     ++YY PY  P  P G           +G      P  P   GGG P                     A+       +  +EGP GANLFIYHLPHDLTDADLATAF PFGTV+SAKVY+DKN+GESKGFGFVSYDS  AADAAI +MNGFQIG+KRLKVQHKR+
Sbjct:  271 GLPTPPQAPLTATNPAAFMYYNPYAMP-PPTG-----------AGYPSTAFPVVPI--GGGFP-------------------LDAASSDAARSAAQIEGPVGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKNTGESKGFGFVSYDSAQAADAAIASMNGFQIGSKRLKVQHKRV 418

[Close]

BLAST of EWM28106.1 vs. NCBI_GenBank
Match: gi|669148256|ref|XP_008609690.1| (hypothetical protein SDRG_05737 [Saprolegnia diclina VS20] >gi|530738667|gb|EQC36909.1| hypothetical protein SDRG_05737 [Saprolegnia diclina VS20])

HSP 1 Score: 189.119 bits (479), Expect = 4.903e-50
Identity = 90/196 (45.92%), Postives = 134/196 (68.37%), Query Frame = 0

Query:   12 AATTEQTRATAGAPAGLTKDGDAIKLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLH--TERENKLFVGMLPKNVDEGLVEGLFAPFGKIKEIHIIRS-VEGEGKGCAFLKFVERSSAIQAIEALNERQVVEGASRPMVVRFAESKR 204
            A   +Q     G   G ++  DA+KLFVGQ+P++M E  LRP    +GP++++ +IRDK SG HRGCAF+T+C+++AA+AA   LHN++ LP + N LQVRPA+      +E+KLF+GM+PK+ DE  +  +FA  G I+EI+I+R    G+ KGCAFLK+ +R +A  AI+A N    +E  + P+VV+FA+S+R
Sbjct:   16 AEYDDQDVEDYGNHHGHSQPPDAVKLFVGQVPRNMEEADLRPILEAFGPLYDIVIIRDKVSGTHRGCAFVTFCSRDAAEAAIETLHNQVTLPLSSNPLQVRPAEGQAGASQEHKLFIGMIPKHADESSIREVFASHGPIEEIYILRHPATGQSKGCAFLKYKDRHAASAAIDAYNGTYTMERGTAPLVVKFADSRR 211

HSP 2 Score: 157.918 bits (398), Expect = 9.207e-39
Identity = 74/85 (87.06%), Postives = 81/85 (95.29%), Query Frame = 0

Query:  432 LEGPAGANLFIYHLPHDLTDADLATAFNPFGTVVSAKVYVDKNSGESKGFGFVSYDSPLAADAAIKAMNGFQIGTKRLKVQHKRI 516
            LEGPAGANLFIYHLPHDLTDADLATAF PFGTV+SAKV++DKN+GESKGFGFVSYDS  AADAAI +MNGFQIG+KRLKVQHKR+
Sbjct:  334 LEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVFMDKNTGESKGFGFVSYDSVQAADAAIASMNGFQIGSKRLKVQHKRV 418

HSP 3 Score: 63.1586 bits (152), Expect = 5.867e-7
Identity = 33/88 (37.50%), Postives = 48/88 (54.55%), Query Frame = 0

Query:   36 KLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLHTERENK 123
            KLF+G IPK   E ++R  FA +GPI E+ ++R   +G  +GCAFL Y  + AA AA  A +    +      L V+ AD   +R  +
Sbjct:  129 KLFIGMIPKHADESSIREVFASHGPIEEIYILRHPATGQSKGCAFLKYKDRHAASAAIDAYNGTYTMERGTAPLVVKFADSRRQRIQR 216

[Close]

BLAST of EWM28106.1 vs. NCBI_GenBank
Match: gi|1191046365|ref|XP_020900805.1| (CUGBP Elav-like family member 3-A isoform X3 [Exaiptasia pallida] >gi|999974848|gb|KXJ14022.1| CUGBP Elav-like family member 3-A [Exaiptasia pallida])

HSP 1 Score: 189.119 bits (479), Expect = 8.576e-50
Identity = 85/180 (47.22%), Postives = 125/180 (69.44%), Query Frame = 0

Query:   26 AGLTKDGDAIKLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLHTEREN-KLFVGMLPKNVDEGLVEGLFAPFGKIKEIHIIRSVEGEGKGCAFLKFVERSSAIQAIEALNERQVVEGASRPMVVRFAESKR 204
             G+T+D  A+KLF+GQ+P+   E  LRP F  +G I+ELT+++DK +G H+GCAFLT+CT+EAA  A   LH K  LP   +A+QV+PAD  T  E+ KLF+GM+ K+  E  V  +F+PFG I+E+ ++R+ +G  KGCAFLK+  R  A  AI  ++  + +EG S PMVV+FA++++
Sbjct:   10 VGMTRDPGAVKLFIGQVPRTWEEKDLRPIFEPFGAIYELTILKDKFTGNHKGCAFLTFCTREAAVNAQQKLHEKKTLPGMHHAIQVKPADSETRSEDRKLFIGMISKSAKEDDVRVMFSPFGTIEELTVLRNSDGSSKGCAFLKYSNRMQAQGAIANMHNSRTMEGCSSPMVVKFADTEK 189

HSP 2 Score: 122.094 bits (305), Expect = 4.796e-26
Identity = 56/83 (67.47%), Postives = 63/83 (75.90%), Query Frame = 0

Query:  433 EGPAGANLFIYHLPHDLTDADLATAFNPFGTVVSAKVYVDKNSGESKGFGFVSYDSPLAADAAIKAMNGFQIGTKRLKVQHKR 515
            EGP GANLFIYHLP + +DADL   F  FG VVSAKV++DK +  SK FGFVSYD+P +A  AI  MNGFQI TKRLKVQ KR
Sbjct:  380 EGPEGANLFIYHLPQEFSDADLLNTFQQFGNVVSAKVFIDKVTNTSKCFGFVSYDNPQSAANAITHMNGFQIATKRLKVQLKR 462

HSP 3 Score: 66.2402 bits (160), Expect = 7.027e-8
Identity = 36/99 (36.36%), Postives = 52/99 (52.53%), Query Frame = 0

Query:   25 PAGLTKDGDAIKLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLHTERENK 123
            PA      +  KLF+G I K   ED +R  F+ +G I ELTV+R+ + G  +GCAFL Y  +  AQ A   +HN   +    + + V+ AD   E+  K
Sbjct:   97 PADSETRSEDRKLFIGMISKSAKEDDVRVMFSPFGTIEELTVLRN-SDGSSKGCAFLKYSNRMQAQGAIANMHNSRTMEGCSSPMVVKFADTEKEKLQK 194

The following BLAST results are available for this feature:

BLAST of EWM28106.1 vs. NCBI_GenBank

BLAST of EWM28106.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585110450\|gb\|EWM28106.1\|	0.000e+0	100.00	rna binding protein [Nannochloropsis gaditana]	[more]
gi\|298710156\|emb\|CBJ31866.1\|	4.452e-66	55.66	trinucleotide repeat containing 4, isoform CRA_d [...	[more]
gi\|698816374\|ref\|XP_009841216.1\|	9.541e-52	50.00	hypothetical protein, variant [Aphanomyces astaci]...	[more]
gi\|1173960045\|gb\|OQS06212.1\|	1.517e-51	50.86	CUG-BP- and ETR-3-like factor [Thraustotheca clava...	[more]
gi\|1173951461\|gb\|OQR99335.1\|	3.527e-51	51.43	CUG-BP- and ETR-3-like factor [Achlya hypogyna]	[more]
gi\|698816372\|ref\|XP_009841215.1\|	5.810e-51	50.00	hypothetical protein H257_14965 [Aphanomyces astac...	[more]
gi\|813125127\|ref\|XP_012196612.1\|	7.651e-51	49.71	hypothetical protein SPRG_02658 [Saprolegnia paras...	[more]
gi\|673041277\|ref\|XP_008874599.1\|	3.590e-50	48.86	hypothetical protein H310_10113 [Aphanomyces invad...	[more]
gi\|669148256\|ref\|XP_008609690.1\|	4.903e-50	45.92	hypothetical protein SDRG_05737 [Saprolegnia dicli...	[more]
gi\|1191046365\|ref\|XP_020900805.1\|	8.576e-50	47.22	CUGBP Elav-like family member 3-A isoform X3 [Exai...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna2575	rna2575	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications