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Properties
| Property Name | Value |
|---|
| Product | tetratricopeptide repeat family protein |
| Orig transcript id | gnl|cribi|Naga_100036g10.2550.mrna |
| Orig protein id | gnl|cribi|Naga_100036g10.2550 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:695629..698321 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2573 ID=rna2573|Name=rna2573|organism=Nannochloropsis gaditana|type=mRNA|length=1090bp
TACAGACACACATAGCCCAAGGATCGTCTCTTACAGGAAAGCACGGCCGA
CTGCCATTAATAATTAGATCCGCTTTGCGCTAAGATTGTGTACGAGGACA
ATTTTGACATGTCGTTGACTTCGAATGCCGGTACGCTGAAGCCGGCCAAT
ATTCTCATCGGCGTTCCCAAGAAAGGACGATTAAATGAGAAGGTTTCCAA
GCTCTTGGATGGTGCCGGCCTCGAATATCGGCGGCCGGACCGCGTGGACG
TGGCCGTTTGCACAGGTCTGCCCGTGACTCTTGTTTTTCTTCCTGCAGCT
GACATCGCAGCTTATGTGGGAGAAGGAAATGTGGACATGGGCATAACAGG
ACAAGACATACTGCAAGAGACCCTCTCGGAGTCACCCGACGCGCACATCA
CGGAGCTGCTGGAGTTGGGGTTTGGGAAATGCTCGCTATCCTTGCAAGCG
CCCGTAAAAGACAAGATTTCGAACGCCAAGGAACTCTCTGGCTGTCGCAT
AGTTACTTCTTTCCCGGCATTGACGAGGGCTTTCTTCGACAAGCTGGACG
CCGAGACTGGCCGTCACACAAAGGTTCGCACAGTCTCAGGTTCGGTGGAG
GCAGCGTGCGGGCTCGGCCTGGCCGACGCTGTGGTCGACCTGGTGGAGAC
AGGCACGACGATGAGAGCCGCTGGCCTGGATGTGGTGGCTGAGGTAATGG
TTTCCCAGGCTGTCCTCATCGCCAATCCAAACTCCAGCCACCAAGATTTG
ATTGCCCTGATTTTGAAAAGAATCGAGGGCTACATCACGGCCACACAGTA
CATGATGATTTCCTATAATGTGCGCCGAGAAAGTCTGGGCAATACGCTGG
CGATCACTCCGGGAAAGCGTTCCCCGACCGTGAGCACCCTTGAAGAAGAC
GGATGGGTGGCGGTGCAGGCGTTGGTGAGACGGAAGGAGTCTAACGTCAA
AATGGACCAGCTCCACGACGCAGGCGCCACGGATATCCTTCTTTTTCCCA
TATCCAATTCTCGCATGTGAGAAGTAAGCGCAAGAGGGCGGGTGCTACAT
TCAAAAAATAATAAAGTAACCACGCTTTTAAAAAATCGTC back to topprotein sequence of rna2573 >rna2573-protein ID=rna2573-protein|Name=rna2573|organism=Nannochloropsis gaditana|type=polypeptide|length=716bp
METSPGGASAVFPPLSSTLEESGPENVTGGESILPPTSCPHVLPPHGSFP
SSGQASSHSSSTTLPHRCVLEDFTRCSESHLWKLMMSFYDRKGVESWSQG
IVPHFITCNAFIGRAYAQVFQGYLRDCAKKARENGPVCSALDPSEPLYII
ELGAGSGKFSFFMLKALEEMRELLDFPFEKIVYVMTDFTKNHFNFWETHP
GLHKYIAQGSLDLAIFDAVHDSVIRLSHAGTVLAPGSVKNPMCLIANYLF
DTLCHDVFQVDGGVLKEGLISVGSKQAQEPDPLDPEIIKRFHNLFQYQPV
TPDYYAHTHQPAHRPGHAPMGSPPSSSEPLSAGTNGSSDREDSLHLGRIL
HWYRDYFGRSSTGGSFLFPIGALRALRRLLAFSNDRGLVISGDKGSNQAE
QFRGLVDPHIAVHGSFSVMVNYHAIGLYFISRGGFALHNPQEDASLKVSA
FVLSGRAGPPESPSEDSPPEAHSPVTTTTSCLDTSPSSWAGPNAESEGEK
RVRAFPCLRAAFSTAVDQFGPNDFFVLQKSMKEDSPNPTLKAIVALLKLG
DWDPDVFYKFRETILNQVPTAGQKLRNDLCRGVPRVWEHHYMLDRDKDIA
FEIGRFYYGIREYERALGFYSLSSTSIGEHHVTCHNMGLCHYSLGRLQQA
LEHFERSLALNASYEKAWSWQQKVLQELNPSPSPSPGPVVHETRCLDFPE
VGNLSLAARRGGDRRP back to topmRNA from alignment at CM002459.1:695629..698321+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2573 ID=rna2573|Name=rna2573|organism=Nannochloropsis gaditana|type=mRNA|length=2693bp|location=Sequence derived from alignment at CM002459.1:695629..698321+ (Nannochloropsis gaditana)
CTCACATTCTTGCCCTTTCGCGCCGCTCGTCCCTCTTAATCTGTCCAGTC
GCACGATATCGTTCAAATTGCGAATTCCGTCGTCTCTTGTCTACCTCCCC
GATTTCAGATGGAAACCAGCCCTGGGGGTGCCAGTgctgtcttccctcca
ctctcaTCTACACTTGAGGAAAGTGGACCTGAAAATGTTACAGGTGGGGA
GTCGATTCTACCTCCTACGTCATGCCCCCACGTGTTGCCGCCACATGGaa
gttttccttcctcaggcCAAGcatcctcccactcctcttCGACCACACTT
CCACATCGCTGCGTCCTGGAGGACTTTACAAGGTGCAGCGAAAGTCACCT
GTGGAAGCTCATGATGTCTTTCTACGATCGAAAAGGTGTCGAATCCTGGT
CGCAGGGGATCGTGCCACACTTCATTACATGTAACGCTTTTATCGGGAGG
GCGTACGCCCAAGTCTTTCAAGGTTACTTGCGAGACTGTGCCAAGAAGGC
TCGTGAAAATGGACCCGTATGTTCGGCATTGGATCCTTCAGAGCCATTGT
ATATTATAGAGCTGGGCGCTGGCTCCGGAAAATTCAGCTTTTTTATGCTC
AAAGCCCTGGAAGAGATGCGGGAGCTGCTGGATTTTCCCTTCGAGAAAAT
TGTGTACGTCATGACGGACTTCACCAAGAACCATTTCAACTTCTGGGAGA
CGCATCCTGGACTGCACAAGTATATAGCGCAAGGCTCGCTGGACCTGGCC
ATCTTCGACGCGGTGCACGACTCCGTGATACGCCTCAGCCACGCGGGCAC
TGTCTTGGCCCCGGGCTCAGTCAAGAATCCCATGTGTCTGATCGCAAACT
ACTTGTTCGACACGCTTTGCCACGACGTCTTCCAGGTTGACGGTGGCGTA
CTCAAAGAGGGGTTGATATCGGTGGGGTCCAAGCAGGCGCAGGAGCCAGA
CCCCCTGGATCCCGAGATCATCAAACGTTTCCACAACCTCTTCCAGTACC
AGCCCGTGACTCCGGACTACTACGCGCACACGCACCAACCGGCCCACCGT
CCGGGACATGCCCCAATGGgctctcccccatcctcgagCGAGCCCTTGAG
CGCTGGGACGAACGGGTCCTCGGACCGGGAAGACTCTCTGCACCTGGGCC
GGATCCTACACTGGTACCGCGATTACTTCGGGCGTAGCAGTACGGGCggg
tccttcctctttcccatcggggccctccgcgccctccggcgcctcctcgc
cttcagCAATGACAGGGGCTTGGTCATTTCGGGCGACAAGGGCAGCAACC
AGGCGGAGCAGTTCCGAGGCCTGGTCGACCCGCACATCGCTGTCCACGGA
TCCTTCTCGGTCATGGTCAACTACCACGCCATCGGCCTCTACTTCATCAG
CCGGGGGGGCTTCGCTCTCCACAATCCCCAGGAAGACGCCTCTTTGAAAG
TCTCGGCCTTCGTACTCAGCGGCCGCGCCGGCCCTCCGGAAAGCCCGTCA
GAGGATTCCCCCCCTGAAGCTCACTCCCCCgtgaccaccaccacctcctg
cctcgacacctccccgtcctcctgggCCGGCCCCAACGCGGAgtcggagg
gcgagaagcGGGTGCGGGCCTTTCCCTGCCTGCGCGCCGCCTTCTCGACC
GCCGTGGATCAGTTCGGCCCCAACGATTTCTTCGTCCTGCAGAAGAGCAT
GAAGGAGGACTCCCCGAACCCCACGCTCAAGGCGATAGTCGCCCTTCTGA
AGCTAGGGGACTGGGACCCGGACGTCTTCTACAAGTTTCGCGAGACCATC
CTCAATCAAGTCCCCACCGCTGGCCAGAAGCTGCGGAACGACCTGTGCCG
AGGCGTGCCCCGGGTGTGGGAGCACCACTACATGCTCGATCGGGACAAGG
ACATCGCCTTCGAGATCGGCAGATTCTACTACGGAATCCGGGAATACGAA
CGGGCCTTGGGCTTCTAcagcctctcctccacctcgattGGGGAGCACCA
CGTGACCTGCCACAATATGGGCCTCTGTCACTACTCTCtgggccgcctcc
agcaggCGCTTGAGCACTTCGAGCGCTCCCTGGCCCTGAACGCCTCCTAC
GAGAAGGCCTGGTCGTGGCAGCAGAAAGTCCTGCAGGAGCTGAAcccttc
cccgtcgccctcccctggcccTGTTGTCCACGAGACTCGATGCTTGGATT
TTCCGGAAGTAGGGAATCTGTCCCTGGCagcgcggagggggggggatcgt
cGCCCCTGAGGGTCTGATGGAGAAGCCGCGTAAGGCAAGTTTGCGAAAGT
GGGATGGGTCAGGGAGAGAAACGCTCGAGAGTGGTGTATTGTAGACCGAA
GCCGCCGCGACGAGCGCTACTCGCGATCAAGGGACATGGTCGTTGTGGCA
CCTAGACTGTCAGGATTGCCAGGCTCACGGGGGCTGGATGGGTGGGGGCT
AAGCAAAGGGTGGATAGACGTTGGTGTGGAAATGAAACTACTCCATCTGC
TGGTAGAAGCGAAGGACAACAAAGGCAAAGCTGTGTATAAAATGACGACG
CCAAGAAATGAGCCACTAGAGACACCCGGAAAGTAAAATGCACAGGGACG
AGACGTCCAAGCACGACGGGGGGCGTCAGCTTTTTCGCGCGCTCGtgatt
tccttcttcttaAATCCCAGCATACTCGACAGTATCGAACACC back to topCoding sequence (CDS) from alignment at CM002459.1:695629..698321+ >rna2573 ID=rna2573|Name=rna2573|organism=Nannochloropsis gaditana|type=CDS|length=2151bp|location=Sequence derived from alignment at CM002459.1:695629..698321+ (Nannochloropsis gaditana)
ATGGAAACCAGCCCTGGGGGTGCCAGTgctgtcttccctccactctcaTC
TACACTTGAGGAAAGTGGACCTGAAAATGTTACAGGTGGGGAGTCGATTC
TACCTCCTACGTCATGCCCCCACGTGTTGCCGCCACATGGaagttttcct
tcctcaggcCAAGcatcctcccactcctcttCGACCACACTTCCACATCG
CTGCGTCCTGGAGGACTTTACAAGGTGCAGCGAAAGTCACCTGTGGAAGC
TCATGATGTCTTTCTACGATCGAAAAGGTGTCGAATCCTGGTCGCAGGGG
ATCGTGCCACACTTCATTACATGTAACGCTTTTATCGGGAGGGCGTACGC
CCAAGTCTTTCAAGGTTACTTGCGAGACTGTGCCAAGAAGGCTCGTGAAA
ATGGACCCGTATGTTCGGCATTGGATCCTTCAGAGCCATTGTATATTATA
GAGCTGGGCGCTGGCTCCGGAAAATTCAGCTTTTTTATGCTCAAAGCCCT
GGAAGAGATGCGGGAGCTGCTGGATTTTCCCTTCGAGAAAATTGTGTACG
TCATGACGGACTTCACCAAGAACCATTTCAACTTCTGGGAGACGCATCCT
GGACTGCACAAGTATATAGCGCAAGGCTCGCTGGACCTGGCCATCTTCGA
CGCGGTGCACGACTCCGTGATACGCCTCAGCCACGCGGGCACTGTCTTGG
CCCCGGGCTCAGTCAAGAATCCCATGTGTCTGATCGCAAACTACTTGTTC
GACACGCTTTGCCACGACGTCTTCCAGGTTGACGGTGGCGTACTCAAAGA
GGGGTTGATATCGGTGGGGTCCAAGCAGGCGCAGGAGCCAGACCCCCTGG
ATCCCGAGATCATCAAACGTTTCCACAACCTCTTCCAGTACCAGCCCGTG
ACTCCGGACTACTACGCGCACACGCACCAACCGGCCCACCGTCCGGGACA
TGCCCCAATGGgctctcccccatcctcgagCGAGCCCTTGAGCGCTGGGA
CGAACGGGTCCTCGGACCGGGAAGACTCTCTGCACCTGGGCCGGATCCTA
CACTGGTACCGCGATTACTTCGGGCGTAGCAGTACGGGCgggtccttcct
ctttcccatcggggccctccgcgccctccggcgcctcctcgccttcagCA
ATGACAGGGGCTTGGTCATTTCGGGCGACAAGGGCAGCAACCAGGCGGAG
CAGTTCCGAGGCCTGGTCGACCCGCACATCGCTGTCCACGGATCCTTCTC
GGTCATGGTCAACTACCACGCCATCGGCCTCTACTTCATCAGCCGGGGGG
GCTTCGCTCTCCACAATCCCCAGGAAGACGCCTCTTTGAAAGTCTCGGCC
TTCGTACTCAGCGGCCGCGCCGGCCCTCCGGAAAGCCCGTCAGAGGATTC
CCCCCCTGAAGCTCACTCCCCCgtgaccaccaccacctcctgcctcgaca
cctccccgtcctcctgggCCGGCCCCAACGCGGAgtcggagggcgagaag
cGGGTGCGGGCCTTTCCCTGCCTGCGCGCCGCCTTCTCGACCGCCGTGGA
TCAGTTCGGCCCCAACGATTTCTTCGTCCTGCAGAAGAGCATGAAGGAGG
ACTCCCCGAACCCCACGCTCAAGGCGATAGTCGCCCTTCTGAAGCTAGGG
GACTGGGACCCGGACGTCTTCTACAAGTTTCGCGAGACCATCCTCAATCA
AGTCCCCACCGCTGGCCAGAAGCTGCGGAACGACCTGTGCCGAGGCGTGC
CCCGGGTGTGGGAGCACCACTACATGCTCGATCGGGACAAGGACATCGCC
TTCGAGATCGGCAGATTCTACTACGGAATCCGGGAATACGAACGGGCCTT
GGGCTTCTAcagcctctcctccacctcgattGGGGAGCACCACGTGACCT
GCCACAATATGGGCCTCTGTCACTACTCTCtgggccgcctccagcaggCG
CTTGAGCACTTCGAGCGCTCCCTGGCCCTGAACGCCTCCTACGAGAAGGC
CTGGTCGTGGCAGCAGAAAGTCCTGCAGGAGCTGAAcccttccccgtcgc
cctcccctggcccTGTTGTCCACGAGACTCGATGCTTGGATTTTCCGGAA
GTAGGGAATCTGTCCCTGGCagcgcggagggggggggatcgtcGCCCCTG
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