rna2572, rna2572 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2572
Unique Name	rna2572
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1691
Alignment location	CM002459.1:693751..695260 -

Link to JBrowse

Properties


Property Name	Value
Product	atp phosphoribosyltransferase
Orig transcript id	gnl\|cribi\|Naga_100036g11.2548.mrna
Orig protein id	gnl\|cribi\|Naga_100036g11.2548
Gene	ATP-PRT
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:693751..695260 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
ATP-PRT	gene2459	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2572	rna2572-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28128.1	cds2564	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:693751..695260-
coding sequence from alignment at CM002459.1:693751..695260-

mRNA sequence

>rna2572 ID=rna2572|Name=rna2572|organism=Nannochloropsis gaditana|type=mRNA|length=1691bp
GGTACCCGGAAATATCAAGGGACTTGCCCACCTCTGGCCCACATGTAGCT
TTGGGGCTTCCCCAAAACTTGGCATATTTATCAGACCGTGATAAATGAGG
TCACAATTTTACCTCAAGGCTAGGGCTCCTGTTCCACGAAATGCGAGGTT
TTTATTCGGATTGCAATCTTCCTTTATACAGAACGGGTTTGGACACTTCA
ACTAAGCCCCTCGCGACTTCTCATGCCAGTCTCACAATTGTCGTTGCTTA
CGCTTTTATTCCGCAAACACAAAATTAACCTGCAGACTCATACTCTATGC
TTCTCAATAAGGTATACAGCAGATGATATATGCGAAAGTAGCCATCTTCC
TCGCCAGTATTTTGAGCACGGGCTGCGCCTTTCAACCTCTAGTTCATAGC
CCTCTCTCCTATTCTTCCTACCATGGGAGTCGACAAACGTTTGGGAAATG
CAATGCCGCTTCATTTATTTCAGACGTGACTGAGAAGGATAGGGCTGCGT
TGGAGGCAGAAAAACTGGCTGACCAAGAATTCACCAGGGCGGCTAAATCG
CTCCTCAAGGAACAAAAAAAATTCTGTGTAACATTTGACAGCAACTTCGA
AAAACTTAGCGAGCTCAGCGACGAACTAATTGAATGTGGGGCTTTGGAAG
TATCACTTGACCCCATGAATTTGAAGTCATTTGCTCTCACAGTCGACATG
AAAGGGAAGTCTCTGGAAGACAGTAGCCGTGCACTGGAAAATTTGATGCA
TTCAGCGCTGGGTGCGCTTCCACAGCTCCTGGAATGCAATGAAGCAGAAA
ACAGAAGCCATCCTTCGTGGTCGTACGAGGAGGAAAGGGTGCTAAATGCC
GTCAACTGGCAGAAGGCCGCAATCCAAGAGGGTTTCCCCCCCGTGAACGT
CGGCCGCTTCCAAGTCGTGCCCGTGCAAACCTACTATGAGCTGCCCCTGC
GTCCACAAGACTCGTATCAGCCTTCCCAACCACCCCGGGGAACCCACCAG
GTCCGTATCCTCCCGGGCGAGGGCTGGGGGGACGGCCACCATCCAACGAC
GATGCTCTGTTTGGATTTCCTCAGCCAGGAGGGCATCGTTTGCGGGGGCG
AGAGGGTTGTGGACTATGGATGCGGAAGTGGGATCTTATCCATCGCGGCG
GTCCAGCTTGGGGCCCGGGAGGCTGTAGGAATAGATGTGTGTTACGACGC
GTTGGCCTCCGCCACGACCAACGTGCGGCTTAATGGGGTCGAGCAGGAGG
TGGAGCTTCTCCACCCCCGAGAGGTAGTGCCGGGCGACTTCGTTCCTGGC
GACATAGTCCTGGCCAACATCCTTGTGGGCACCCTGATGGCCATGTCCAA
CACCATTCTAGGCGCCGTCCGGGAGGGAGGGTGGCTGGTCTTGTCCGGGC
TGCGGCCGGAGCAAGTGGAGGTAATCAAGCGTAAATACGGGGACCACGTC
AGGTGGGATGAAAGCTTGGAGCGGGCAGAGGAAGTTGAGAACCCCACTTT
CGGCACCGGTGCGGGCTTGTGGGTGCGCTTAGTTGGGCGGCGGGTGCTCG
GAGATAGATGGGTGGAGGCTCTAAGCGAGGCAGCAGTCTCGTAGGAGTGA
GTCCGAGAGAGGATCGGTTCGGGACCCAACAAAGTACGAAGCAAAATTTA
AAAGATGTTGCTCTGCCATAACATATTCTACGAGGACGAAT

protein sequence of rna2572

>rna2572-protein ID=rna2572-protein|Name=rna2572|organism=Nannochloropsis gaditana|type=polypeptide|length=303bp
MSLTSNAGTLKPANILIGVPKKGRLNEKVSKLLDGAGLEYRRPDRVDVAV
CTGLPVTLVFLPAADIAAYVGEGNVDMGITGQDILQETLSESPDAHITEL
LELGFGKCSLSLQAPVKDKISNAKELSGCRIVTSFPALTRAFFDKLDAET
GRHTKVRTVSGSVEAACGLGLADAVVDLVETGTTMRAAGLDVVAEVMVSQ
AVLIANPNSSHQDLIALILKRIEGYITATQYMMISYNVRRESLGNTLAIT
PGKRSPTVSTLEEDGWVAVQALVRRKESNVKMDQLHDAGATDILLFPISN
SRM

mRNA from alignment at CM002459.1:693751..695260-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2572 ID=rna2572|Name=rna2572|organism=Nannochloropsis gaditana|type=mRNA|length=1510bp|location=Sequence derived from alignment at CM002459.1:693751..695260- (Nannochloropsis gaditana)
TACAGACACACATAGCCCAAGGATCGTCTCTTACAGGAAAGCACGGCCGA
CTGCCATTAATAATTAGATCCGCTTTGCGCTAAGATTGTGTACGAGGACA
ATTTTGACATGGTAAGCCTGAGCCGATAAGTCGGGGAGGTAGAACCACCA
GGACGACCCGAAGCATTTTGGATTTGAATAGACCGTTCTCCTGCCACCTC
GTTCATAAACGATGTAATGAAAAGCATTCGAATGTATGTCTGGCTGTAGG
CGTACCTACACCGTGCTTTAGCTCGTGTGCCCCCTAGAGGCGAGCTGGAA
ATGCGGCGGGAGATGCAAAACAACCTTGTTGTGAAATTCACATTCACAAC
CATCCCAAAAATTAACAGTCGTTGACTTCGAATGCCGGTACGCTGAAGCC
GGCCAATATTCTCATCGGCGTTCCCAAGAAAGGACGATTAAATGAGAAGG
TTTCCAAGCTCTTGGATGGTGCCGGCCTCGAATATCGGCGGCCGGACCGC
GTGGACGTGGCCGTTTGCACAGGTCTGCCCGTGACTCTTGTTTTTCTTCC
TGCAGCTGACATCGCAGCTTATGTGGGAGAAGGAAATGTGGACATGGGCA
TAACAGGACAAGACATACTGCAAGAGACCCTCTCGGAGTCACCCGACGCG
CACATCACGGAGCTGCTGGAGTTGGGGTTTGGGAAATGCTCGCTATCCTT
GCAAGCGCCCGTAAAAGACAAGATTTCGAACGCCAAGGAACTCTCTGGCT
GTCGCATAGTTACTTCTTTCCCGGCATTGACGAGGGCTTTCTTCGACAAG
CTGGACGCCGAGACTGGCCGTCACACAAGTACGTTACACGGAGGGGCATG
TACATAGCAAGAGTGATCAAGGGTGGCACTGGGGTGGAAGCGAAGGCCAC
GTGATCACGAAAGTGGACAACCTTTCTTGTTGTTAACCCTCTGCTCGAAG
TTGACGGCCCCTCTCTCACCATCCTTTGAACCCCCTGACAGAGGTTCGCA
CAGTCTCAGGTTCGGTGGAGGCAGCGTGCGGGCTCGGCCTGGCCGACGCT
GTGGTCGACCTGGTGGAGACAGGCACGACGATGAGAGCCGCTGGCCTGGA
TGTGGTGGCTGAGGTAATGGTTTCCCAGGCTGTCCTCATCGCCAATCCAA
ACTCCAGCCACCAAGATTTGATTGCCCTGATTTTGAAAAGAATCGAGGGC
TACATCACGGCCACACAGTACATGATGATTTCCTATAATGTGCGCCGAGA
AAGTCTGGGCAATACGCTGGCGATCACTCCGGGAAAGCGTTCCCCGACCG
TGAGCACCCTTGAAGAAGACGGATGGGTGGCGGTGCAGGCGTTGGTGAGA
CGGAAGGAGTCTAACGTCAAAATGGACCAGCTCCACGACGCAGGCGCCAC
GGATATCCTTCTTTTTCCCATATCCAATTCTCGCATGTGAGAAGTAAGCG
CAAGAGGGCGGGTGCTACATTCAAAAAATAATAAAGTAACCACGCTTTTA
AAAAATCGTC

Coding sequence (CDS) from alignment at CM002459.1:693751..695260-

>rna2572 ID=rna2572|Name=rna2572|organism=Nannochloropsis gaditana|type=CDS|length=2736bp|location=Sequence derived from alignment at CM002459.1:693751..695260- (Nannochloropsis gaditana)
AGGTTCGCACAGTCTCAGGTTCGGTGGAGGCAGCGTGCGGGCTCGGCCTG
GCCGACGCTGTGGTCGACCTGGTGGAGACAGGCACGACGATGAGAGCCGC
TGGCCTGGATGTGGTGGCTGAGGTAATGGTTTCCCAGGCTGTCCTCATCG
CCAATCCAAACTCCAGCCACCAAGATTTGATTGCCCTGATTTTGAAAAGA
ATCGAGGGCTACATCACGGCCACACAGTACATGATGATTTCCTATAATGT
GCGCCGAGAAAGTCTGGGCAATACGCTGGCGATCACTCCGGGAAAGCGTT
CCCCGACCGTGAGCACCCTTGAAGAAGACGGATGGGTGGCGGTGCAGGCG
TTGGTGAGACGGAAGGAGTCTAACGTCAAAATGGACCAGCTCCACGACGC
AGGCGCCACGGATATCCTTCTTTTTCCCATATCCAATTCTCGCATGTGAT
CGTTGACTTCGAATGCCGGTACGCTGAAGCCGGCCAATATTCTCATCGGC
GTTCCCAAGAAAGGACGATTAAATGAGAAGGTTTCCAAGCTCTTGGATGG
TGCCGGCCTCGAATATCGGCGGCCGGACCGCGTGGACGTGGCCGTTTGCA
CAGGTCTGCCCGTGACTCTTGTTTTTCTTCCTGCAGCTGACATCGCAGCT
TATGTGGGAGAAGGAAATGTGGACATGGGCATAACAGGACAAGACATACT
GCAAGAGACCCTCTCGGAGTCACCCGACGCGCACATCACGGAGCTGCTGG
AGTTGGGGTTTGGGAAATGCTCGCTATCCTTGCAAGCGCCCGTAAAAGAC
AAGATTTCGAACGCCAAGGAACTCTCTGGCTGTCGCATAGTTACTTCTTT
CCCGGCATTGACGAGGGCTTTCTTCGACAAGCTGGACGCCGAGACTGGCC
GTCACACAAATGAGGTTCGCACAGTCTCAGGTTCGGTGGAGGCAGCGTGC
GGGCTCGGCCTGGCCGACGCTGTGGTCGACCTGGTGGAGACAGGCACGAC
GATGAGAGCCGCTGGCCTGGATGTGGTGGCTGAGGTAATGGTTTCCCAGG
CTGTCCTCATCGCCAATCCAAACTCCAGCCACCAAGATTTGATTGCCCTG
ATTTTGAAAAGAATCGAGGGCTACATCACGGCCACACAGTACATGATGAT
TTCCTATAATGTGCGCCGAGAAAGTCTGGGCAATACGCTGGCGATCACTC
CGGGAAAGCGTTCCCCGACCGTGAGCACCCTTGAAGAAGACGGATGGGTG
GCGGTGCAGGCGTTGGTGAGACGGAAGGAGTCTAACGTCAAAATGGACCA
GCTCCACGACGCAGGCGCCACGGATATCCTTCTTTTTCCCATATCCAATT
CTCGCATGTGATCGTTGACTTCGAATGCCGGTACGCTGAAGCCGGCCAAT
ATTCTCATCGGCGTTCCCAAGAAAGGACGATTAAATGAGAAGGTTTCCAA
GCTCTTGGATGGTGCCGGCCTCGAATATCGGCGGCCGGACCGCGTGGACG
TGGCCGTTTGCACAGGTCTGCCCGTGACTCTTGTTTTTCTTCCTGCAGCT
GACATCGCAGCTTATGTGGGAGAAGGAAATGTGGACATGGGCATAACAGG
ACAAGACATACTGCAAGAGACCCTCTCGGAGTCACCCGACGCGCACATCA
CGGAGCTGCTGGAGTTGGGGTTTGGGAAATGCTCGCTATCCTTGCAAGCG
CCCGTAAAAGACAAGATTTCGAACGCCAAGGAACTCTCTGGCTGTCGCAT
AGTTACTTCTTTCCCGGCATTGACGAGGGCTTTCTTCGACAAGCTGGACG
CCGAGACTGGCCGTCACACAAATGAGGTTCGCACAGTCTCAGGTTCGGTG
GAGGCAGCGTGCGGGCTCGGCCTGGCCGACGCTGTGGTCGACCTGGTGGA
GACAGGCACGACGATGAGAGCCGCTGGCCTGGATGTGGTGGCTGAGGTAA
TGGTTTCCCAGGCTGTCCTCATCGCCAATCCAAACTCCAGCCACCAAGAT
TTGATTGCCCTGATTTTGAAAAGAATCGAGGGCTACATCACGGCCACACA
GTACATGATGATTTCCTATAATGTGCGCCGAGAAAGTCTGGGCAATACGC
TGGCGATCACTCCGGGAAAGCGTTCCCCGACCGTGAGCACCCTTGAAGAA
GACGGATGGGTGGCGGTGCAGGCGTTGGTGAGACGGAAGGAGTCTAACGT
CAAAATGGACCAGCTCCACGACGCAGGCGCCACGGATATCCTTCTTTTTC
CCATATCCAATTCTCGCATGTGATCGTTGACTTCGAATGCCGGTACGCTG
AAGCCGGCCAATATTCTCATCGGCGTTCCCAAGAAAGGACGATTAAATGA
GAAGGTTTCCAAGCTCTTGGATGGTGCCGGCCTCGAATATCGGCGGCCGG
ACCGCGTGGACGTGGCCGTTTGCACAGGTCTGCCCGTGACTCTTGTTTTT
CTTCCTGCAGCTGACATCGCAGCTTATGTGGGAGAAGGAAATGTGGACAT
GGGCATAACAGGACAAGACATACTGCAAGAGACCCTCTCGGAGTCACCCG
ACGCGCACATCACGGAGCTGCTGGAGTTGGGGTTTGGGAAATGCTCGCTA
TCCTTGCAAGCGCCCGTAAAAGACAAGATTTCGAACGCCAAGGAACTCTC
TGGCTGTCGCATAGTTACTTCTTTCCCGGCATTGACGAGGGCTTTCTTCG
ACAAGCTGGACGCCGAGACTGGCCGTCACACAAATG

Synonyms

Publications