rna2571, rna2571 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2571
Unique Name	rna2571
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1723
Alignment location	CM002459.1:691642..693583 -

Link to JBrowse

Properties


Property Name	Value
Product	ribosomal protein l11 methyltransferase
Orig transcript id	gnl\|cribi\|Naga_100036g12.2530.mrna
Orig protein id	gnl\|cribi\|Naga_100036g12.2530
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:691642..693583 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100036g12	gene2458	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2571	rna2571-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28110.1	cds2563	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:691642..693583-
coding sequence from alignment at CM002459.1:691642..693583-

mRNA sequence

>rna2571 ID=rna2571|Name=rna2571|organism=Nannochloropsis gaditana|type=mRNA|length=1723bp
GTGTCCGACATTGTGAAAGCACCTGTGGCATACCATGCGGCGCGTAGCGT
TTGGCAAGAGACGAAATGATCCGAAACGGTGTCAATGGGGTGTTTCCACT
GCGTTCCCGTCTAACTTCTCAGACTCCCTCGCGGGTGCATCCCCTCGCTG
TTTCGCTGCCCGACACTCTTACACGTTGTACGAGCCCATTTACTGGTCAG
GGGGCCATTTGCACAGAAGAATCGTCCAGATTCTACCACATGTATGTCGA
GTGCTCCAGTGAAGAGCCGTCTTGACCTTTCCTCAGCTTCAAACCCAGCA
CCTTCCGCTCTCGTATCACGGGCAACCGCGGGAGGTTTTTTAAATCTCCA
AGTAGCCGCTCGAGGCGTTGTATGCTTCAGATAGGTCGTCAACGGACTGA
AAAGAGGCGAGTCTTCAATGCTTACCTCCTCCACCGTCCCAAACGTCTCC
TCTTTCTGGTGGGTGTAGTATGCTTGGCACTTGGGTGGAATCAAACGACA
GCAGTATCCATGGCTTCCCGAACTGCATTTCTTTTCCGACATTTGTCGCT
GCTTCCAACTTCTTCATCAGCGGCATTGCCTCCCCACTTGCCTTGGGGGG
CTCTACCAACCATTACCCCCTTCAGCTCTTCATCCTCAAAGTCTACGCAA
ATGTCTCCGCGAACTCCAAACATGCCTGTTCCTACAGAGAATTGTTTCTT
TATACTAGATGCAACAAGCTTTTTGTATCGCTCGTATTACTCCAAATACC
AACTGAATGACTACGAGGAGACTGATCGCCCCCTCCTTCTTCTTGGCAAG
GAGTTCGCCCAGATCATGACACAACATAACCCGGCCTACGTCGCCGCTGC
GTTCGACGGTCCTCGTGACCAGGTTTTCCGGCGGGATCTTTTTCCTGCTT
ACAAGCGAAATCGGGAGGCGCAACCACCGGAGCTTCTGGCCTTAGTACCT
CGAGCCATGGCGTACCTGGAAGCTCTGGGCTGTCGAGGGGTGTTCCGGTC
TACTCGTCACGAGGGAGACGACTTGATGGGCTCTCTCTCCCACATGGCGA
AGGCCGTGGCCCCCGACGTCACGGTGGTGTTGGTCACCGAGGACAAGGAT
ATGTTCTGCCTGGTGGATGACCGCACCCTGGTCATGCACCCGCGGACCCT
CGAGGTCTTCGACGCCGCCCGCGTGGAGGCAAAGCTAGGAGTACCACCCT
CTCTCGTCGGCGACCTGCTCTCCCTGGCAGGGGACCCCGTGGATGGCATC
CCGGGCGTGAAGGGCGTGGGTCCACAGACTGCAGTCAGGCTGCTGAGGGC
CTTCGGCTCCTTGGACAACCTGTACGCCAACCTGGAGGACGTGGCCGCTC
TGCCCAACCTCCGCGGCGCCAAGACTCTGGCAGCAAAGCTGACTCAGCAA
AAGGAGGACGTGCGGGTCTACCGCTCCGTGGTGGCCTTGGCCTGTGACGT
GGCACTACAGCTTCCGCGAGCGCCGGACCCACGCTGGACGGGGACGTCGC
CTCTGGAGGGTCTCCGGTACGGGGGCGTCGATGAGATAGAGGGGGAGAGT
CTGCTCTTGGAAGCCATGGGGGCGCCCGGGATTGGCCGAGGACCTTTCCT
GCAGCTGCTCCGACACCAACGGCAACGCTCTGTGCCGTTTTAGAAAAGCG
TGATGCGTACAGCAAAGAACTATGTAAAATATATCGAAATGAAACAGCTT
AAAGTAGCGGTCATTCGTCCTCG

protein sequence of rna2571

>rna2571-protein ID=rna2571-protein|Name=rna2571|organism=Nannochloropsis gaditana|type=polypeptide|length=423bp
MIYAKVAIFLASILSTGCAFQPLVHSPLSYSSYHGSRQTFGKCNAASFIS
DVTEKDRAALEAEKLADQEFTRAAKSLLKEQKKFCVTFDSNFEKLSELSD
ELIECGALEVSLDPMNLKSFALTVDMKGKSLEDSSRALENLMHSALGALP
QLLECNEAENRSHPSWSYEEERVLNAVNWQKAAIQEGFPPVNVGRFQVVP
VQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFL
SQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTN
VRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVR
EGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLW
VRLVGRRVLGDRWVEALSEAAVS

mRNA from alignment at CM002459.1:691642..693583-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2571 ID=rna2571|Name=rna2571|organism=Nannochloropsis gaditana|type=mRNA|length=1942bp|location=Sequence derived from alignment at CM002459.1:691642..693583- (Nannochloropsis gaditana)
GGTACCCGGAAATATCAAGGGACTTGCCCACCTCTGGCCCACATGTAGCT
TTGGGGCTTCCCCAAAACTTGGCATATTTATCAGACCGTGATAAATGAGG
TCACAATTTTACCTCAAGGCTAGGGCTCCTGTTCCACGAAATGCGAGGTT
TTTATTCGGATTGCAATCTTCCTTTATACAGAACGGGTTTGGACACTTCA
ACTAAGCCCCTCGCGACTTCTCATGCCAGTCTCACAATTGTCGTTGCTTA
CGCTTTTATTCCGCAAACACAAAATTAACCTGCAGACTCATACTCTATGC
TTCTCAATAAGGTATACAGCAGATGATATATGCGAAAGTAGCCATCTTCC
TCGCCAGGTATGTCGCGCTGTTGTCGGGTTTCAGGGACATTAAGTATTAC
CCGCAAAAGCATTTCAAGGCAGCCAAACTCCGATTATGACCCTGGCGTAG
AGGAAATTGTATGAACAAGCTGCTTAAATCTTTTGTCTTCATTTGACTCG
GGGGCTACCATTCATTTTGGCAAGTGCTGTTTTATTTCCTGTTCATAAGG
ACCCTTGCAATGATTGAACGCGCTCATCCACGACACATCCCACAATACAT
GCACCTAGTATTTTGAGCACGGGCTGCGCCTTTCAACCTCTAGTTCATAG
CCCTCTCTCCTATTCTTCCTACCATGGGAGTCGACAAACGTTTGGGAAAT
GCAATGCCGCTTCATTTATTTCAGACGTGACTGAGAAGGATAGGGCTGCG
TTGGAGGCAGAAAAACTGGCTGACCAAGAATTCACCAGGGCGGCTAAATC
GCTCCTCAAGGAACAAAAAAAATTCTGTGTAACATTTGACAGCAACTTCG
AAAAACTTAGCGAGCTCAGCGACGAACTAATTGAATGTGGGGCTTTGGAA
GTATCACTTGACCCCATGAATTTGAAGTCATTTGCTCTCACAGTCGACAT
GAAAGGGAAGTCTCTGGAAGACAGTAGCCGTGCACTGGAAAATTTGATGC
ATTCAGCGCTGGGTGCGCTTCCACAGCTCCTGGAATGCAATGAAGCAGAA
AACAGAAGCCATCCTTCGTGGTCGTACGAGGAGGAAAGGGTGCTAAATGC
CGTCAACTGGCAGAAGGCCGCAATCCAAGAGGGTTTCCCCCCCGTGAACG
TCGGCCGCTTCCAAGTCGTGCCCGTGCAAACCTACTATGAGCTGCCCCTG
CGTCCACAAGACTCGTATCAGCCTTCCCAACCACCCCGGGGAACCCACCA
GGTCCGTATCCTCCCGGGCGAGGGCTGGGGGGACGGCCACCATCCAACGA
CGATGCTCTGTTTGGATTTCCTCAGCCAGGAGGGCATCGTTTGCGGGGGC
GAGAGGGTTGTGGACTATGGATGCGGAAGTGGGATCTTATCCATCGCGGC
GGTCCAGCTTGGGGCCCGGGAGGCTGTAGGAATAGATGTGTGTTACGACG
CGTTGGCCTCCGCCACGACCAACGTGCGGCTTAATGGGGTCGAGCAGGAG
GTGGAGCTTCTCCACCCCCGAGAGGTAGTGCCGGGCGACTTCGTTCCTGG
CGACATAGTCCTGGCCAACATCCTTGTGGGCACCCTGATGGCCATGTCCA
ACACCATTCTAGGCGCCGTCCGGGAGGGAGGGTGGCTGGTCTTGTCCGGG
CTGCGGCCGGAGCAAGTGGAGGTAATCAAGCGTAAATACGGGGACCACGT
CAGGTGGGATGAAAGCTTGGAGCGGGCAGAGGAAGTTGAGAACCCCACTT
TCGGCACCGGTGCGGGCTTGTGGGTGCGCTTAGTTGGGCGGCGGGTGCTC
GGAGATAGATGGGTGGAGGCTCTAAGCGAGGCAGCAGTCTCGTAGGAGTG
AGTCCGAGAGAGGATCGGTTCGGGACCCAACAAAGTACGAAGCAAAATTT
AAAAGATGTTGCTCTGCCATAACATATTCTACGAGGACGAAT

Coding sequence (CDS) from alignment at CM002459.1:691642..693583-

>rna2571 ID=rna2571|Name=rna2571|organism=Nannochloropsis gaditana|type=CDS|length=2544bp|location=Sequence derived from alignment at CM002459.1:691642..693583- (Nannochloropsis gaditana)
TATTTTGAGCACGGGCTGCGCCTTTCAACCTCTAGTTCATAGCCCTCTCT
CCTATTCTTCCTACCATGGGAGTCGACAAACGTTTGGGAAATGCAATGCC
GCTTCATTTATTTCAGACGTGACTGAGAAGGATAGGGCTGCGTTGGAGGC
AGAAAAACTGGCTGACCAAGAATTCACCAGGGCGGCTAAATCGCTCCTCA
AGGAACAAAAAAAATTCTGTGTAACATTTGACAGCAACTTCGAAAAACTT
AGCGAGCTCAGCGACGAACTAATTGAATGTGGGGCTTTGGAAGTATCACT
TGACCCCATGAATTTGAAGTCATTTGCTCTCACAGTCGACATGAAAGGGA
AGTCTCTGGAAGACAGTAGCCGTGCACTGGAAAATTTGATGCATTCAGCG
CTGGGTGCGCTTCCACAGCTCCTGGAATGCAATGAAGCAGAAAACAGAAG
CCATCCTTCGTGGTCGTACGAGGAGGAAAGGGTGCTAAATGCCGTCAACT
GGCAGAAGGCCGCAATCCAAGAGGGTTTCCCCCCCGTGAACGTCGGCCGC
TTCCAAGTCGTGCCCGTGCAAACCTACTATGAGCTGCCCCTGCGTCCACA
AGACTCGTATCAGCCTTCCCAACCACCCCGGGGAACCCACCAGGTCCGTA
TCCTCCCGGGCGAGGGCTGGGGGGACGGCCACCATCCAACGACGATGCTC
TGTTTGGATTTCCTCAGCCAGGAGGGCATCGTTTGCGGGGGCGAGAGGGT
TGTGGACTATGGATGCGGAAGTGGGATCTTATCCATCGCGGCGGTCCAGC
TTGGGGCCCGGGAGGCTGTAGGAATAGATGTGTGTTACGACGCGTTGGCC
TCCGCCACGACCAACGTGCGGCTTAATGGGGTCGAGCAGGAGGTGGAGCT
TCTCCACCCCCGAGAGGTAGTGCCGGGCGACTTCGTTCCTGGCGACATAG
TCCTGGCCAACATCCTTGTGGGCACCCTGATGGCCATGTCCAACACCATT
CTAGGCGCCGTCCGGGAGGGAGGGTGGCTGGTCTTGTCCGGGCTGCGGCC
GGAGCAAGTGGAGGTAATCAAGCGTAAATACGGGGACCACGTCAGGTGGG
ATGAAAGCTTGGAGCGGGCAGAGGAAGTTGAGAACCCCACTTTCGGCACC
GGTGCGGGCTTGTGGGTGCGCTTAGTTGGGCGGCGGGTGCTCGGAGATAG
ATGGGTGGAGGCTCTAAGCGAGGCAGCAGTCTCGTAGATGATATATGCGA
AAGTAGCCATCTTCCTCGCCAGTATTTTGAGCACGGGCTGCGCCTTTCAA
CCTCTAGTTCATAGCCCTCTCTCCTATTCTTCCTACCATGGGAGTCGACA
AACGTTTGGGAAATGCAATGCCGCTTCATTTATTTCAGACGTGACTGAGA
AGGATAGGGCTGCGTTGGAGGCAGAAAAACTGGCTGACCAAGAATTCACC
AGGGCGGCTAAATCGCTCCTCAAGGAACAAAAAAAATTCTGTGTAACATT
TGACAGCAACTTCGAAAAACTTAGCGAGCTCAGCGACGAACTAATTGAAT
GTGGGGCTTTGGAAGTATCACTTGACCCCATGAATTTGAAGTCATTTGCT
CTCACAGTCGACATGAAAGGGAAGTCTCTGGAAGACAGTAGCCGTGCACT
GGAAAATTTGATGCATTCAGCGCTGGGTGCGCTTCCACAGCTCCTGGAAT
GCAATGAAGCAGAAAACAGAAGCCATCCTTCGTGGTCGTACGAGGAGGAA
AGGGTGCTAAATGCCGTCAACTGGCAGAAGGCCGCAATCCAAGAGGGTTT
CCCCCCCGTGAACGTCGGCCGCTTCCAAGTCGTGCCCGTGCAAACCTACT
ATGAGCTGCCCCTGCGTCCACAAGACTCGTATCAGCCTTCCCAACCACCC
CGGGGAACCCACCAGGTCCGTATCCTCCCGGGCGAGGGCTGGGGGGACGG
CCACCATCCAACGACGATGCTCTGTTTGGATTTCCTCAGCCAGGAGGGCA
TCGTTTGCGGGGGCGAGAGGGTTGTGGACTATGGATGCGGAAGTGGGATC
TTATCCATCGCGGCGGTCCAGCTTGGGGCCCGGGAGGCTGTAGGAATAGA
TGTGTGTTACGACGCGTTGGCCTCCGCCACGACCAACGTGCGGCTTAATG
GGGTCGAGCAGGAGGTGGAGCTTCTCCACCCCCGAGAGGTAGTGCCGGGC
GACTTCGTTCCTGGCGACATAGTCCTGGCCAACATCCTTGTGGGCACCCT
GATGGCCATGTCCAACACCATTCTAGGCGCCGTCCGGGAGGGAGGGTGGC
TGGTCTTGTCCGGGCTGCGGCCGGAGCAAGTGGAGGTAATCAAGCGTAAA
TACGGGGACCACGTCAGGTGGGATGAAAGCTTGGAGCGGGCAGAGGAAGT
TGAGAACCCCACTTTCGGCACCGGTGCGGGCTTGTGGGTGCGCTTAGTTG
GGCGGCGGGTGCTCGGAGATAGATGGGTGGAGGCTCTAAGCGAGGCAGCA
GTCTCGTAGATGATATATGCGAAAGTAGCCATCTTCCTCGCCAG

Synonyms

Publications