EWM28110.1, cds2563 (CDS) Nannochloropsis gaditana

Overview
NameEWM28110.1
Unique Namecds2563
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:693227..693261 -
Alignment locationCM002459.1:691739..692975 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28110.1
Productribosomal protein l11 methyltransferase
Orig transcript idgnl|cribi|Naga_100036g12.2530.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:693227..693261 -
CM002459.1supercontigCM002459.1:691739..692975 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|585110454|gb|EWM28110.1| (ribosomal protein l11 methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 870.537 bits (2248), Expect = 0.000e+0
Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 0
Query:    1 MIYAKVAIFLASILSTGCAFQPLVHSPLSYSSYHGSRQTFGKCNAASFISDVTEKDRAALEAEKLADQEFTRAAKSLLKEQKKFCVTFDSNFEKLSELSDELIECGALEVSLDPMNLKSFALTVDMKGKSLEDSSRALENLMHSALGALPQLLECNEAENRSHPSWSYEEERVLNAVNWQKAAIQEGFPPVNVGRFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRRVLGDRWVEALSEAAVS 423
            MIYAKVAIFLASILSTGCAFQPLVHSPLSYSSYHGSRQTFGKCNAASFISDVTEKDRAALEAEKLADQEFTRAAKSLLKEQKKFCVTFDSNFEKLSELSDELIECGALEVSLDPMNLKSFALTVDMKGKSLEDSSRALENLMHSALGALPQLLECNEAENRSHPSWSYEEERVLNAVNWQKAAIQEGFPPVNVGRFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRRVLGDRWVEALSEAAVS
Sbjct:    1 MIYAKVAIFLASILSTGCAFQPLVHSPLSYSSYHGSRQTFGKCNAASFISDVTEKDRAALEAEKLADQEFTRAAKSLLKEQKKFCVTFDSNFEKLSELSDELIECGALEVSLDPMNLKSFALTVDMKGKSLEDSSRALENLMHSALGALPQLLECNEAENRSHPSWSYEEERVLNAVNWQKAAIQEGFPPVNVGRFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRRVLGDRWVEALSEAAVS 423          
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|1210531372|dbj|GAX10040.1| (hypothetical protein FisN_25Lh051 [Fistulifera solaris])

HSP 1 Score: 152.14 bits (383), Expect = 4.466e-39
Identity = 97/222 (43.69%), Postives = 133/222 (59.91%), Query Frame = 0
Query:  217 PSQPPRG-THQVRILPGE-GWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVE-QEVELLHPREVVPGDFVPG---DIVLANILVGTLM--AMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRW--DESLE-RAEEVEN--PTFGTGAGLWVRLVGRRVLGD--RWVEALSEAAVS 423
            P Q   G    + +L G  GWG G HPTT LCL++L ++  + GGE V+DYGCGSGILSIAA+ +GA   VG+D+  +AL +A  NV LN  +    E LH RE++P + VPG   D+ +ANIL+G L+  +M   ++  +R  G L LSG+RP +V  +K  YG+ + W  D   E  AEE E    ++G   G W RLVGR+   D    +E +SE AVS
Sbjct:   97 PQQQENGLIRSIYLLMGRNGWGTGVHPTTRLCLEWLCEQ--IQGGEIVLDYGCGSGILSIAALHMGAARCVGVDIEAEALITAERNVALNEYDSSRFEGLHTREILPYEIVPGRGVDVCIANILIGQLVRPSMVAALVSNIRNNGILCLSGIRPHEVASLKAAYGESIEWIDDHYAELSAEETEGSLASYGFDCGRWSRLVGRKRAADDKSEIERMSELAVS 316          
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|1210523025|dbj|GAX18076.1| (hypothetical protein FisN_25Hh051 [Fistulifera solaris])

HSP 1 Score: 148.673 bits (374), Expect = 4.768e-39
Identity = 91/203 (44.83%), Postives = 129/203 (63.55%), Query Frame = 0
Query:  234 GWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVE-QEVELLHPREVVPGDFVPG---DIVLANILVGTLM--AMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRW--DESLE-RAEEVEN--PTFGTGAGLWVRLVGRRVLGD--RWVEALSEAAVS 423
            GWG G HPTT LCL++L ++  + GGE V+DYGCGSGILSIAA+ +GA   +G+D+  +AL +A  NV LN  +    E LH RE++P + VPG   D+ +ANIL+G L+  +M   ++  +R+ G L LSG+RP +V+ +K  YG+ + W  D+  E  AEE E    ++G   G W RLVGR+   D    +E +SE AVS
Sbjct:    5 GWGTGVHPTTRLCLEWLCEQ--IQGGEVVLDYGCGSGILSIAALHMGAARCIGVDIEAEALITAERNVALNEYDSSRFEGLHTREILPYEIVPGRGVDVCIANILIGQLVRPSMVAALVSNIRDDGLLGLSGIRPHEVDSLKAAYGESMEWMDDQYAELSAEETEGSLASYGFDCGRWSRLVGRKRAADGKSEIERMSELAVS 205          
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|299116555|emb|CBN74743.1| (ribosomal protein L11 methyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 150.599 bits (379), Expect = 7.860e-37
Identity = 107/254 (42.13%), Postives = 145/254 (57.09%), Query Frame = 0
Query:  178 NWQKAAIQEGFPPVNVGRFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRRVLG--------DRWVEALSEAAVS 423
             W+     EGF  V + R Q+  VQ         ++   PS   RG   V++L G+GWGDG HP+T +CLDFL  E  V GGE VVDYG GSG+L+ AAV LGA+    ID+  + LA A  N  LNG+ ++V +LH REV  GD    +IV+AN++ G +      ++ AV+EGG L LSGLRP    +I+ ++G ++ WD  LE +   E+PT+G     +VRLVGR   G             ALSEAAV+
Sbjct:  285 QWEATRSSEGFDTVTMRRLQISAVQR--------REEQVPSS--RGLRSVKLLEGQGWGDGEHPSTWMCLDFL--ESAVEGGEEVVDYGTGSGVLAAAAVVLGAKHVTAIDIDVEILAHARQNFLLNGISEKVLVLHGREVSIGDL-SAEIVVANMIAGPMRRQMAALVLAVKEGGLLCLSGLRPSDAPLIRSEFGKYMDWDVGLEASR--ESPTWGE----YVRLVGRSKPGLALGGGLRAELERALSEAAVA 519          
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|219113215|ref|XP_002186191.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583041|gb|ACI65661.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 143.665 bits (361), Expect = 5.755e-36
Identity = 99/252 (39.29%), Postives = 141/252 (55.95%), Query Frame = 0
Query:  193 VGRFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPG-EGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEV-ELLHPREVVPGDFVPGDI---------VLANILVGTLM--AMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPT------FGTGAGLWVRLVGRRVLGDRW--VEALSEAAVS 423
            +G  +V+  ++ Y L  +  D Y P         VR+L G  GWG G HPTT LCLD++ Q   V  G  V+DYGCGSGILS+AA+  GAR  +G+DV  +AL +A+ NV++NG +      LH REV+P      +          V+ANIL+G L+  +M   I+  +  GG + LSG+RP +V+ +K  YG+H+ W +  + AE   + T      +G   G W RLVGR+   DR   +E +SE AVS
Sbjct:   67 IGNVRVLAAESTY-LDDKRHDGYFP---------VRLLLGRNGWGTGVHPTTRLCLDWICQ--TVQNGNVVLDYGCGSGILSVAALHNGARRCIGVDVEAEALVTASRNVQINGFDDSTFAGLHVREVLPYGLTTSNTDNDGVGVDVVVANILIGQLVRPSMVAAIVTNLAPGGLVCLSGIRPHEVDSLKVAYGEHMEWLD-CQYAELSADATPGSLQSYGFDCGRWSRLVGRKTSSDRGGDIERMSELAVS 305          
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|397615014|gb|EJK63158.1| (hypothetical protein THAOC_16202 [Thalassiosira oceanica])

HSP 1 Score: 143.665 bits (361), Expect = 1.416e-35
Identity = 81/204 (39.71%), Postives = 125/204 (61.27%), Query Frame = 0
Query:  229 ILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPG---DIVLANILVGTLM--AMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRW--DESLE-RAEEVEN--PTFGTGAGLWVRLVGRRVLGDRWVEALSEAAV 422
            +L   GWG G HPTT LCL+F+ +   V  G+ ++DYGCGSGILS+ A+ +GA   +G+D+  +AL +A  N+ LN   +    LH REV+P +  P    DI +ANIL+G L+  +M   +L  +++GG + LSG+RP++V+ +K  Y +++ W  D+  E  A E  N   ++G   G W RLVGR+     ++E +SE A+
Sbjct:  137 LLGRNGWGTGVHPTTRLCLEFIEKN--VNEGDTLLDYGCGSGILSVGALHVGASRVIGVDIEAEALVTAERNLELNEFSERASFLHTREVLPFEICPPFGVDICVANILIGQLVRPSMVAALLSNLKDGGLICLSGIRPDEVDSLKEAY-ENIEWLEDQYAELTATETTNCIESYGFDVGNWARLVGRKKSSSGFIERMSELAI 337          
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|873238880|emb|CEL95384.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 131.339 bits (329), Expect = 4.903e-31
Identity = 79/195 (40.51%), Postives = 113/195 (57.95%), Query Frame = 0
Query:  196 FQVVPVQTYYELPLRPQDSYQPSQP-PRG--THQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDF-VPG--DIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLER 384
            F+V     ++ + + P ++     P P G     + +   +GWG G HP+T LC++FL +   V  G+ V+DYG GS ILS+AA +LGA   +G+D+  D L +A  N RLNGV+  VEL+H REVV GD  + G  D  +ANILVG L  ++  +  AVR  GWL LSG+RP QV+ + + Y     +D    R
Sbjct:  118 FEVAAKTDHFRVLIVPSEAPSSDVPVPLGGQLQDIHLRLHDGWGTGAHPSTRLCMEFLERR--VRRGDAVLDYGVGSAILSVAAAKLGASHVLGVDIDDDILTNARENCRLNGVDGCVELMHTREVVTGDTAISGRFDGCVANILVGPLKRLAPALGDAVRADGWLCLSGVRPSQVDDVMQAYNVFYDFDHKAVR 310          
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|652566971|ref|WP_026960425.1| (50S ribosomal protein L11 methyltransferase [Aliagarivorans taiwanensis])

HSP 1 Score: 127.872 bits (320), Expect = 3.819e-30
Identity = 77/183 (42.08%), Postives = 108/183 (59.02%), Query Frame = 0
Query:  227 VRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRRVL 409
            V + PG  +G G HPTT LCL +L  +G+   G+ V+D+GCGSGIL+IAA++LGA+  VGID+   A+ ++  N   NGV +++EL  P++  P DF   DIV+ANIL G L  +S  ILG ++ GG L LSG+  EQ E + + Y +    D+ L   E             W RL GR+ L
Sbjct:  128 VMLDPGLAFGTGTHPTTSLCLRWL--DGLDLQGKTVLDFGCGSGILAIAALKLGAKRVVGIDIDPQAIIASRDNAERNGVAEQLELYLPKD-QPDDF-QADIVVANILAGPLKELSEVILGYLKPGGQLALSGILEEQAEDVSQAYAEQCEMDQPLIDQE-------------WGRLSGRKHL 293          
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|1148590429|ref|WP_077336804.1| (50S ribosomal protein L11 methyltransferase [Vibrio ruber] >gi|1145440225|emb|SJN58491.1| Ribosomal protein L11 methyltransferase [Vibrio ruber DSM 16370])

HSP 1 Score: 126.716 bits (317), Expect = 8.570e-30
Identity = 84/244 (34.43%), Postives = 133/244 (54.51%), Query Frame = 0
Query:  165 SWSYEEERVLNAVNWQKAAIQEGFPPVNVG-RFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRR 407
            S+SY+ E++ +  +W++  + + F P+  G R  + P  ++ E+P            P   + V + PG  +G G HPTT LCL++L  EG+   G+ V+D+GCGSGIL+IAA++LGA++ +G+D+   AL ++  N + NGVE ++E+  P+     D +  DIV+ANIL G L  +S  I   VR GG L +SG+   Q E +   Y +    D  +E  E             W R+ GR+
Sbjct:   83 SFSYKVEQIEDK-DWEREWM-DNFHPMKFGSRLWICP--SWKEIP-----------DPDAVN-VMLDPGLAFGTGTHPTTALCLEWL--EGLDLSGKTVIDFGCGSGILAIAAIKLGAKQVIGVDIDPQALLASKDNAQRNGVENQLEVYLPQN--QPDNLSADIVVANILAGPLKELSPVIQSLVRPGGQLAMSGVLETQAEDVANFYRNQFDIDPIIENNE-------------WCRISGRK 293          
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|1149088560|ref|WP_077666936.1| (50S ribosomal protein L11 methyltransferase [Salinivibrio sp. PR6] >gi|1146129178|gb|OOE80296.1| ribosomal protein L11 methyltransferase [Salinivibrio sp. PR6])

HSP 1 Score: 126.716 bits (317), Expect = 9.606e-30
Identity = 81/230 (35.22%), Postives = 124/230 (53.91%), Query Frame = 0
Query:  158 AENRSHPSWSYEEERVLNAVNWQKAAIQEGFPPVNVG-RFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAE 386
            AEN +H     E++      +W +A + + F P+  G R  + P  T+YE+P                  V + PG  +G G HPTT LCL++L  + +   G+ V+D+GCGSGIL+IAA++LGA   +GID+   AL ++  N   NGV  ++ L  P++  P D    D+V+ANIL G L  +S+ I G ++ GG L +SG+   Q + +   Y D +  D  +ER E
Sbjct:   81 AENFAHKVEQLEDK------DWTRAWM-DNFKPIQFGERLWICP--TWYEVP------------DDNAVNVMLDPGLAFGTGSHPTTALCLEWL--DSLDLSGKTVIDFGCGSGILAIAAIKLGAERVIGIDIDPQALLASKDNAERNGVADQLHLYLPKD-QPADL-NADVVVANILAGPLRELSSVIKGLIKPGGQLAMSGVLETQADDVANHYRDSLTIDPIVEREE 285          
The following BLAST results are available for this feature:
BLAST of EWM28110.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110454|gb|EWM28110.1|0.000e+0100.00ribosomal protein l11 methyltransferase [Nannochlo... [more]
gi|1210531372|dbj|GAX10040.1|4.466e-3943.69hypothetical protein FisN_25Lh051 [Fistulifera sol... [more]
gi|1210523025|dbj|GAX18076.1|4.768e-3944.83hypothetical protein FisN_25Hh051 [Fistulifera sol... [more]
gi|299116555|emb|CBN74743.1|7.860e-3742.13ribosomal protein L11 methyltransferase [Ectocarpu... [more]
gi|219113215|ref|XP_002186191.1|5.755e-3639.29predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397615014|gb|EJK63158.1|1.416e-3539.71hypothetical protein THAOC_16202 [Thalassiosira oc... [more]
gi|873238880|emb|CEL95384.1|4.903e-3140.51unnamed protein product [Vitrella brassicaformis C... [more]
gi|652566971|ref|WP_026960425.1|3.819e-3042.0850S ribosomal protein L11 methyltransferase [Aliag... [more]
gi|1148590429|ref|WP_077336804.1|8.570e-3034.4350S ribosomal protein L11 methyltransferase [Vibri... [more]
gi|1149088560|ref|WP_077666936.1|9.606e-3035.2250S ribosomal protein L11 methyltransferase [Salin... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2571rna2571Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications