EWM28110.1, cds2563 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|585110454|gb|EWM28110.1| (ribosomal protein l11 methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 870.537 bits (2248), Expect = 0.000e+0 Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 0
Query: 1 MIYAKVAIFLASILSTGCAFQPLVHSPLSYSSYHGSRQTFGKCNAASFISDVTEKDRAALEAEKLADQEFTRAAKSLLKEQKKFCVTFDSNFEKLSELSDELIECGALEVSLDPMNLKSFALTVDMKGKSLEDSSRALENLMHSALGALPQLLECNEAENRSHPSWSYEEERVLNAVNWQKAAIQEGFPPVNVGRFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRRVLGDRWVEALSEAAVS 423
MIYAKVAIFLASILSTGCAFQPLVHSPLSYSSYHGSRQTFGKCNAASFISDVTEKDRAALEAEKLADQEFTRAAKSLLKEQKKFCVTFDSNFEKLSELSDELIECGALEVSLDPMNLKSFALTVDMKGKSLEDSSRALENLMHSALGALPQLLECNEAENRSHPSWSYEEERVLNAVNWQKAAIQEGFPPVNVGRFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRRVLGDRWVEALSEAAVS
Sbjct: 1 MIYAKVAIFLASILSTGCAFQPLVHSPLSYSSYHGSRQTFGKCNAASFISDVTEKDRAALEAEKLADQEFTRAAKSLLKEQKKFCVTFDSNFEKLSELSDELIECGALEVSLDPMNLKSFALTVDMKGKSLEDSSRALENLMHSALGALPQLLECNEAENRSHPSWSYEEERVLNAVNWQKAAIQEGFPPVNVGRFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRRVLGDRWVEALSEAAVS 423
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|1210531372|dbj|GAX10040.1| (hypothetical protein FisN_25Lh051 [Fistulifera solaris]) HSP 1 Score: 152.14 bits (383), Expect = 4.466e-39 Identity = 97/222 (43.69%), Postives = 133/222 (59.91%), Query Frame = 0
Query: 217 PSQPPRG-THQVRILPGE-GWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVE-QEVELLHPREVVPGDFVPG---DIVLANILVGTLM--AMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRW--DESLE-RAEEVEN--PTFGTGAGLWVRLVGRRVLGD--RWVEALSEAAVS 423
P Q G + +L G GWG G HPTT LCL++L ++ + GGE V+DYGCGSGILSIAA+ +GA VG+D+ +AL +A NV LN + E LH RE++P + VPG D+ +ANIL+G L+ +M ++ +R G L LSG+RP +V +K YG+ + W D E AEE E ++G G W RLVGR+ D +E +SE AVS
Sbjct: 97 PQQQENGLIRSIYLLMGRNGWGTGVHPTTRLCLEWLCEQ--IQGGEIVLDYGCGSGILSIAALHMGAARCVGVDIEAEALITAERNVALNEYDSSRFEGLHTREILPYEIVPGRGVDVCIANILIGQLVRPSMVAALVSNIRNNGILCLSGIRPHEVASLKAAYGESIEWIDDHYAELSAEETEGSLASYGFDCGRWSRLVGRKRAADDKSEIERMSELAVS 316
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|1210523025|dbj|GAX18076.1| (hypothetical protein FisN_25Hh051 [Fistulifera solaris]) HSP 1 Score: 148.673 bits (374), Expect = 4.768e-39 Identity = 91/203 (44.83%), Postives = 129/203 (63.55%), Query Frame = 0
Query: 234 GWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVE-QEVELLHPREVVPGDFVPG---DIVLANILVGTLM--AMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRW--DESLE-RAEEVEN--PTFGTGAGLWVRLVGRRVLGD--RWVEALSEAAVS 423
GWG G HPTT LCL++L ++ + GGE V+DYGCGSGILSIAA+ +GA +G+D+ +AL +A NV LN + E LH RE++P + VPG D+ +ANIL+G L+ +M ++ +R+ G L LSG+RP +V+ +K YG+ + W D+ E AEE E ++G G W RLVGR+ D +E +SE AVS
Sbjct: 5 GWGTGVHPTTRLCLEWLCEQ--IQGGEVVLDYGCGSGILSIAALHMGAARCIGVDIEAEALITAERNVALNEYDSSRFEGLHTREILPYEIVPGRGVDVCIANILIGQLVRPSMVAALVSNIRDDGLLGLSGIRPHEVDSLKAAYGESMEWMDDQYAELSAEETEGSLASYGFDCGRWSRLVGRKRAADGKSEIERMSELAVS 205
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|299116555|emb|CBN74743.1| (ribosomal protein L11 methyltransferase [Ectocarpus siliculosus]) HSP 1 Score: 150.599 bits (379), Expect = 7.860e-37 Identity = 107/254 (42.13%), Postives = 145/254 (57.09%), Query Frame = 0
Query: 178 NWQKAAIQEGFPPVNVGRFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRRVLG--------DRWVEALSEAAVS 423
W+ EGF V + R Q+ VQ ++ PS RG V++L G+GWGDG HP+T +CLDFL E V GGE VVDYG GSG+L+ AAV LGA+ ID+ + LA A N LNG+ ++V +LH REV GD +IV+AN++ G + ++ AV+EGG L LSGLRP +I+ ++G ++ WD LE + E+PT+G +VRLVGR G ALSEAAV+
Sbjct: 285 QWEATRSSEGFDTVTMRRLQISAVQR--------REEQVPSS--RGLRSVKLLEGQGWGDGEHPSTWMCLDFL--ESAVEGGEEVVDYGTGSGVLAAAAVVLGAKHVTAIDIDVEILAHARQNFLLNGISEKVLVLHGREVSIGDL-SAEIVVANMIAGPMRRQMAALVLAVKEGGLLCLSGLRPSDAPLIRSEFGKYMDWDVGLEASR--ESPTWGE----YVRLVGRSKPGLALGGGLRAELERALSEAAVA 519
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|219113215|ref|XP_002186191.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583041|gb|ACI65661.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 143.665 bits (361), Expect = 5.755e-36 Identity = 99/252 (39.29%), Postives = 141/252 (55.95%), Query Frame = 0
Query: 193 VGRFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPG-EGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEV-ELLHPREVVPGDFVPGDI---------VLANILVGTLM--AMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPT------FGTGAGLWVRLVGRRVLGDRW--VEALSEAAVS 423
+G +V+ ++ Y L + D Y P VR+L G GWG G HPTT LCLD++ Q V G V+DYGCGSGILS+AA+ GAR +G+DV +AL +A+ NV++NG + LH REV+P + V+ANIL+G L+ +M I+ + GG + LSG+RP +V+ +K YG+H+ W + + AE + T +G G W RLVGR+ DR +E +SE AVS
Sbjct: 67 IGNVRVLAAESTY-LDDKRHDGYFP---------VRLLLGRNGWGTGVHPTTRLCLDWICQ--TVQNGNVVLDYGCGSGILSVAALHNGARRCIGVDVEAEALVTASRNVQINGFDDSTFAGLHVREVLPYGLTTSNTDNDGVGVDVVVANILIGQLVRPSMVAAIVTNLAPGGLVCLSGIRPHEVDSLKVAYGEHMEWLD-CQYAELSADATPGSLQSYGFDCGRWSRLVGRKTSSDRGGDIERMSELAVS 305
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|397615014|gb|EJK63158.1| (hypothetical protein THAOC_16202 [Thalassiosira oceanica]) HSP 1 Score: 143.665 bits (361), Expect = 1.416e-35 Identity = 81/204 (39.71%), Postives = 125/204 (61.27%), Query Frame = 0
Query: 229 ILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPG---DIVLANILVGTLM--AMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRW--DESLE-RAEEVEN--PTFGTGAGLWVRLVGRRVLGDRWVEALSEAAV 422
+L GWG G HPTT LCL+F+ + V G+ ++DYGCGSGILS+ A+ +GA +G+D+ +AL +A N+ LN + LH REV+P + P DI +ANIL+G L+ +M +L +++GG + LSG+RP++V+ +K Y +++ W D+ E A E N ++G G W RLVGR+ ++E +SE A+
Sbjct: 137 LLGRNGWGTGVHPTTRLCLEFIEKN--VNEGDTLLDYGCGSGILSVGALHVGASRVIGVDIEAEALVTAERNLELNEFSERASFLHTREVLPFEICPPFGVDICVANILIGQLVRPSMVAALLSNLKDGGLICLSGIRPDEVDSLKEAY-ENIEWLEDQYAELTATETTNCIESYGFDVGNWARLVGRKKSSSGFIERMSELAI 337
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|873238880|emb|CEL95384.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 131.339 bits (329), Expect = 4.903e-31 Identity = 79/195 (40.51%), Postives = 113/195 (57.95%), Query Frame = 0
Query: 196 FQVVPVQTYYELPLRPQDSYQPSQP-PRG--THQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDF-VPG--DIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLER 384
F+V ++ + + P ++ P P G + + +GWG G HP+T LC++FL + V G+ V+DYG GS ILS+AA +LGA +G+D+ D L +A N RLNGV+ VEL+H REVV GD + G D +ANILVG L ++ + AVR GWL LSG+RP QV+ + + Y +D R
Sbjct: 118 FEVAAKTDHFRVLIVPSEAPSSDVPVPLGGQLQDIHLRLHDGWGTGAHPSTRLCMEFLERR--VRRGDAVLDYGVGSAILSVAAAKLGASHVLGVDIDDDILTNARENCRLNGVDGCVELMHTREVVTGDTAISGRFDGCVANILVGPLKRLAPALGDAVRADGWLCLSGVRPSQVDDVMQAYNVFYDFDHKAVR 310
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|652566971|ref|WP_026960425.1| (50S ribosomal protein L11 methyltransferase [Aliagarivorans taiwanensis]) HSP 1 Score: 127.872 bits (320), Expect = 3.819e-30 Identity = 77/183 (42.08%), Postives = 108/183 (59.02%), Query Frame = 0
Query: 227 VRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRRVL 409
V + PG +G G HPTT LCL +L +G+ G+ V+D+GCGSGIL+IAA++LGA+ VGID+ A+ ++ N NGV +++EL P++ P DF DIV+ANIL G L +S ILG ++ GG L LSG+ EQ E + + Y + D+ L E W RL GR+ L
Sbjct: 128 VMLDPGLAFGTGTHPTTSLCLRWL--DGLDLQGKTVLDFGCGSGILAIAALKLGAKRVVGIDIDPQAIIASRDNAERNGVAEQLELYLPKD-QPDDF-QADIVVANILAGPLKELSEVILGYLKPGGQLALSGILEEQAEDVSQAYAEQCEMDQPLIDQE-------------WGRLSGRKHL 293
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|1148590429|ref|WP_077336804.1| (50S ribosomal protein L11 methyltransferase [Vibrio ruber] >gi|1145440225|emb|SJN58491.1| Ribosomal protein L11 methyltransferase [Vibrio ruber DSM 16370]) HSP 1 Score: 126.716 bits (317), Expect = 8.570e-30 Identity = 84/244 (34.43%), Postives = 133/244 (54.51%), Query Frame = 0
Query: 165 SWSYEEERVLNAVNWQKAAIQEGFPPVNVG-RFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRR 407
S+SY+ E++ + +W++ + + F P+ G R + P ++ E+P P + V + PG +G G HPTT LCL++L EG+ G+ V+D+GCGSGIL+IAA++LGA++ +G+D+ AL ++ N + NGVE ++E+ P+ D + DIV+ANIL G L +S I VR GG L +SG+ Q E + Y + D +E E W R+ GR+
Sbjct: 83 SFSYKVEQIEDK-DWEREWM-DNFHPMKFGSRLWICP--SWKEIP-----------DPDAVN-VMLDPGLAFGTGTHPTTALCLEWL--EGLDLSGKTVIDFGCGSGILAIAAIKLGAKQVIGVDIDPQALLASKDNAQRNGVENQLEVYLPQN--QPDNLSADIVVANILAGPLKELSPVIQSLVRPGGQLAMSGVLETQAEDVANFYRNQFDIDPIIENNE-------------WCRISGRK 293
BLAST of EWM28110.1 vs. NCBI_GenBank
Match: gi|1149088560|ref|WP_077666936.1| (50S ribosomal protein L11 methyltransferase [Salinivibrio sp. PR6] >gi|1146129178|gb|OOE80296.1| ribosomal protein L11 methyltransferase [Salinivibrio sp. PR6]) HSP 1 Score: 126.716 bits (317), Expect = 9.606e-30 Identity = 81/230 (35.22%), Postives = 124/230 (53.91%), Query Frame = 0
Query: 158 AENRSHPSWSYEEERVLNAVNWQKAAIQEGFPPVNVG-RFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAE 386
AEN +H E++ +W +A + + F P+ G R + P T+YE+P V + PG +G G HPTT LCL++L + + G+ V+D+GCGSGIL+IAA++LGA +GID+ AL ++ N NGV ++ L P++ P D D+V+ANIL G L +S+ I G ++ GG L +SG+ Q + + Y D + D +ER E
Sbjct: 81 AENFAHKVEQLEDK------DWTRAWM-DNFKPIQFGERLWICP--TWYEVP------------DDNAVNVMLDPGLAFGTGSHPTTALCLEWL--DSLDLSGKTVIDFGCGSGILAIAAIKLGAERVIGIDIDPQALLASKDNAERNGVADQLHLYLPKD-QPADL-NADVVVANILAGPLRELSSVIKGLIKPGGQLAMSGVLETQADDVANHYRDSLTIDPIVEREE 285 The following BLAST results are available for this feature:
BLAST of EWM28110.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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