rna256, rna256 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna256
Unique Name	rna256
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1097
Alignment location	CM002455.1:646983..649444 -

Link to JBrowse

Properties


Property Name	Value
Product	acyl- oxidase
Orig transcript id	gnl\|cribi\|Naga_100026g60.10628.mrna
Orig protein id	gnl\|cribi\|Naga_100026g60.10628
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:646983..649444 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g60	gene245	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30374.1	cds256	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna256	rna256-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:646983..649444-
coding sequence from alignment at CM002455.1:646983..649444-

mRNA sequence

>rna256 ID=rna256|Name=rna256|organism=Nannochloropsis gaditana|type=mRNA|length=1097bp
TAGCCAGGAGGTAAAACGCTTTTTGTTCATGTGCCTTTCTCTTCCTCCGA
GATCGAAACGACGGTGGTACATGCGCCTTTTCGCCTGGAGATGGTTGCTT
ATCGCAGTGCAATGGAAACGTGAGCTGACGCTTCGCGCAAAACGCAGTCC
GATCGGTGGGCCCACGCCACCCTTGATGGATATTAAGAACACAGCCCCTC
TCTTGAACATCAAAACAGCCGGTCTACTTTTTTGGGGTTCGTCGATGGCC
ACGCGTCTTCAGTTTGAGAATAGCAATGAGATCGGTGTCTTCTCTAGGCT
AACCAACAGCTACTGCTTGACCGCGTTAGGGGGGAGTGAAAACTTCTACA
GTATATTCGAACAGGAGTTAGCGGATCACATCCCTGTGATACACGCCTCA
GTGGCTGGTTGTCGCTTCATTGGCCGTGTGACGATTGGAAACAAGAGGGG
TCTACTCGTGCCTAGCACCACCACGGATCAAGAATTGCAGCATATCCGAA
ACTCCTTACCTGACGCCGTGGTGGTGCAAAGAGTGGAAGAGCGGTTGTCG
GCCTTGGGAAATTGCATCGTGGCAAACGACCATGTGGCCCTCGTACACAC
GGACCTTGACCGGGAGACAGAGGAGATCGTCGCAGACGTGCTGGGCGTGG
AGGTTTTCCGCCAGACCATCGCAGGGAACGCGCTTGTCGGGAGCTACTCT
TACATCACCAACCAGGGCGGCATGGTCCACCCTAAAACCACGGTCGAGGA
TTTGGAGGAGCTCTCCTCCTTGCTACAGATCCCTCTGGTGGCGGGAACGG
TGAATCGGGGTAGCGACGTCCTGGGAGCGGGTCTTGTAGCGAATGACTGG
GCGGCCTTCTGTGGGCTGGACACTACGTCAACGGAGATCAGTGTCGTTGA
ATCAATTTTTAAGCTTCAAGACAATATGCCTGTAAATGTCGTCAAGACTC
TGAGAACGAGTCTCATCGACTCACTAGCATAAATGTTTGCCATTAAAATA
ACAAAGCAGAAATCAAGGAGGCAGGTGTAGCAAAAACGGCACGATAGATG
TTTGTAAAGCCCTCACTCGAAAGGAATGAATTGAAGCTTGAAATACC

protein sequence of rna256

>rna256-protein ID=rna256-protein|Name=rna256|organism=Nannochloropsis gaditana|type=polypeptide|length=751bp
MVNENPLILKRHLEDEEGAMLLQKERATSSVRPEAMATFIFGGQEALSRR
LRALAFIEKDPVFDTKDRKHLDQKSRYVRSSEKAVHLVLKCRRLGIPFTQ
MLDILNVALDEITPTDVHTKMAIPSLMHQTTPEQRAKWLPLAENFRIICA
YAQTELGHGSNVRALETIATYEPSSQSFILHSPRLESAKWWPGGLGKSAT
HAIVLARLLLGGKDKGLHSFIVQLRDLRDHTPLPGVTLGDIGPKLGFMSV
DNGFCLFDHVRIPREHMLMGLAEISPDGHYRKRKGANGGEKILYGAMLDV
RAGLVERGGATLARALTVAIRYSAVRRQGYAPSPPGKLSQSAPLELQVLD
YPTQQHALMPLLAWSFALQITGQFMRRRYKAYLRELDLSLLPEVHALSSG
LKALTGEVVSQGVDVCRRMCGGHGYLLASGLPEVFSNYTAVQTFEGTAQV
LEPQLARFILRLSMAPTERPKASGRGAATAAKAPFALSSDFDYVPLAAGK
TFVRCRAATPVAFLDPAFQIEAYEARVSALLLLAREEVEADLRGGEGGLA
ASMMKNGVLFGRLSRAHCQLVLLRRFHEAVAREEGRMTMTTARNGGVDGE
GNGGRIDLGAADGSEEGESEDREETVTVGPAEVRVLRNLCHLFALSGMER
DMAEFRARDYLSSGQAEMVSREVLRLNRTVRAEAVSLVDAWLLSDKLLGS
ALGRADGRVYGALFEEALRSPLNDKEVSEAYTLHWRRLLMAGDCAWENAR
L

mRNA from alignment at CM002455.1:646983..649444-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna256 ID=rna256|Name=rna256|organism=Nannochloropsis gaditana|type=mRNA|length=2462bp|location=Sequence derived from alignment at CM002455.1:646983..649444- (Nannochloropsis gaditana)
ACGGGTTGTCTTAGGCCTCGTTGAACCGACCTCCCCACTCTCCCCTCCTA
CTACTCGGGCCCGTCCAGGGTCAGTGCACAGCCACAGAGGGGCCCTCGTC
CAGAGACAGGATTATGGTCAACGAGAATCCTTTAATCCTGAAGAGACACC
TGGAGGACGAGGAGGGGGCGATGTTGCTTCAAAAGGAACGTGCTACATCC
TCCGTTCGACCGGAGGCCATGGCCACGTTCATTTTTGGCGGCCAGGAGGC
TCTTTCCCGTCGCCTTCGGGCGCTGGCTTTCATCGAAAAAGATCCCGTCT
TCGACACAAAGGACCGAAAGCACCTTGACCAAAAAAGTCGCTACGTGCGG
TCGTCCGAAAAGGCTGTGCACTTAGTCTTGAAATGTCGTCGCCTGGGAAT
TCCCTTCACCCAGATGCTCGACATTCTAAATGTAGCTTTGGACGAGATAA
CTCCCACAGATGTCCATACCAAAATGGCAATTCCATCTTTGATGCATCAA
ACAACACCTGAACAACGTGCGAAGTGGCTCCCGCTGGCAGAAAACTTCCG
CATCATCTGCGCGTACGCCCAGACCGAGCTCGGCCACGGCTCCAATGTGC
GGGCCCTTGAAACGATCGCGACGTATGAACCATCGTCGCAGTCCTTCATC
TTGCATTCTCCTCGACTGGAGTCGGCGAAGTGGTGGCCGGGAGGTCTGGG
GAAAAGCGCCACGCACGCCATCGTCTTGGCCCGCTTGCTTCTGGGCGGAA
AAGACAAAGGATTGCATTCCTTCATCGTTCAGCTTCGAGACCTGCGGGAC
CATACACCACTGCCTGGCGTCACACTGGGAGATATCGGGCCCAAGTTGGG
ATTCATGAGCGTGGACAACGGCTTCTGCCTCTTCGATCACGTCCGGATCC
CCCGAGAACACATGCTTATGGGCCTGGCGGAAATTTCGCCGGACGGGCAC
TACCGGAAGCGCAAGGGGGCGAATGGCGGGGAGAAGATCCTTTATGGAGC
CATGTTGGATGTACGGGCGGGATTGGTGGAGAGAGGAGGGGCAACATTGG
CCCGCGCCCTGACCGTGGCGATCCGGTACAGTGCGGTGCGGAGGCAGGGG
TATGCCCCTTCCCCCCCGGGCAAGCTTAGCCAATCGGCACCGCTGGAGCT
CCAGGTCCTTGACTACCCGACACAACAACACGCGCTGATGCCCCTCCTCG
CGTGGTCCTTCGCGCTTCAGATTACGGGGCAGTTCATGCGGCGGCGCTAC
AAGGCCTACCTGAGAGAGCTTGACCTCTCCTTACTCCCCGAGGTCCACGC
CCTTTCGAGCGGCCTCAAGGCGCTGACGGGCGAGGTGGTGAGTCAGGGCG
TGGACGTATGCCGGCGCATGTGCGGGGGCCACGGCTACCTGCTCGCCTCG
GGGCTTCCGGAGGTGTTCTCAAACTACACGGCCGTGCAGACCTTCGAAGG
CACCGCCCAGGTACTCGAACCTCAGCTGGCACGTTTCATCTTGCGCTTGA
GCATGGCGCCGACGGAGCGGCCCAAGGCTTCCGGGAGGGGGGCAGCAACC
GCGGCCAAGGCCCCTTTCGCCCTCTCCTCGGACTTCGACTACGTCCCCCT
GGCAGCAGGCAAGACATTCGTGCGATGCCGGGCCGCGACGCCGGTGGCCT
TTCTCGATCCTGCCTTTCAGATCGAAGCATACGAGGCGCGGGTCTCCGCT
CTTCTTTTGCTGGCAAGGGAGGAAGTCGAAGCTGACTTGCGGGGCGGAGA
AGGTGGCTTGGCCGCGTCGATGATGAAGAACGGGGTGCTGTTCGGACGTC
TGTCAAGGGCCCACTGCCAGCTGGTTCTCCTGAGACGCTTCCACGAGGCG
GTCGCCCGCGAGGAAGGGCGGATGACGATGACGACAGCCAGAAACGGGGG
AGTCGACGGGGAAGGGAATGGCGGGCGTATCGACCTGGGCGCGGCCGATG
GGAGCGAGGAGGGCGAGTCGGAGGACAGGGAGGAGACCGTCACGGTGGGG
CCCGCGGAGGTTCGGGTCTTACGCAACCTCTGCCATTTGTTCGCGCTTTC
GGGGATGGAGCGAGACATGGCCGAGTTCCGGGCGCGGGACTACTTGTCGT
CCGGACAAGCAGAGATGGTGAGCAGGGAGGTGCTGCGCCTGAACCGCACC
GTACGCGCGGAGGCCGTGAGTTTGGTCGACGCCTGGCTGCTTTCCGATAA
GCTTCTGGGCTCGGCGCTGGGACGTGCCGACGGACGGGTGTACGGAGCTC
TCTTTGAAGAGGCTTTGCGGTCGCCCTTGAACGACAAGGAGGTCAGCGAG
GCCTACACTCTGCACTGGAGGAGGCTTCTGATGGCAGGGGACTGCGCATG
GGAAAACGCGCGACTGTAGAGCAAGTGAGGAAGGTGGTCGCGAGGGGGAA
GAAAAAATAATGAAAGACTTTGACTAGAATGGTATTTCAAGCTTCAATTC
ATTCCTTTCGAG

Coding sequence (CDS) from alignment at CM002455.1:646983..649444-

>rna256 ID=rna256|Name=rna256|organism=Nannochloropsis gaditana|type=CDS|length=2256bp|location=Sequence derived from alignment at CM002455.1:646983..649444- (Nannochloropsis gaditana)
ATGGTCAACGAGAATCCTTTAATCCTGAAGAGACACCTGGAGGACGAGGA
GGGGGCGATGTTGCTTCAAAAGGAACGTGCTACATCCTCCGTTCGACCGG
AGGCCATGGCCACGTTCATTTTTGGCGGCCAGGAGGCTCTTTCCCGTCGC
CTTCGGGCGCTGGCTTTCATCGAAAAAGATCCCGTCTTCGACACAAAGGA
CCGAAAGCACCTTGACCAAAAAAGTCGCTACGTGCGGTCGTCCGAAAAGG
CTGTGCACTTAGTCTTGAAATGTCGTCGCCTGGGAATTCCCTTCACCCAG
ATGCTCGACATTCTAAATGTAGCTTTGGACGAGATAACTCCCACAGATGT
CCATACCAAAATGGCAATTCCATCTTTGATGCATCAAACAACACCTGAAC
AACGTGCGAAGTGGCTCCCGCTGGCAGAAAACTTCCGCATCATCTGCGCG
TACGCCCAGACCGAGCTCGGCCACGGCTCCAATGTGCGGGCCCTTGAAAC
GATCGCGACGTATGAACCATCGTCGCAGTCCTTCATCTTGCATTCTCCTC
GACTGGAGTCGGCGAAGTGGTGGCCGGGAGGTCTGGGGAAAAGCGCCACG
CACGCCATCGTCTTGGCCCGCTTGCTTCTGGGCGGAAAAGACAAAGGATT
GCATTCCTTCATCGTTCAGCTTCGAGACCTGCGGGACCATACACCACTGC
CTGGCGTCACACTGGGAGATATCGGGCCCAAGTTGGGATTCATGAGCGTG
GACAACGGCTTCTGCCTCTTCGATCACGTCCGGATCCCCCGAGAACACAT
GCTTATGGGCCTGGCGGAAATTTCGCCGGACGGGCACTACCGGAAGCGCA
AGGGGGCGAATGGCGGGGAGAAGATCCTTTATGGAGCCATGTTGGATGTA
CGGGCGGGATTGGTGGAGAGAGGAGGGGCAACATTGGCCCGCGCCCTGAC
CGTGGCGATCCGGTACAGTGCGGTGCGGAGGCAGGGGTATGCCCCTTCCC
CCCCGGGCAAGCTTAGCCAATCGGCACCGCTGGAGCTCCAGGTCCTTGAC
TACCCGACACAACAACACGCGCTGATGCCCCTCCTCGCGTGGTCCTTCGC
GCTTCAGATTACGGGGCAGTTCATGCGGCGGCGCTACAAGGCCTACCTGA
GAGAGCTTGACCTCTCCTTACTCCCCGAGGTCCACGCCCTTTCGAGCGGC
CTCAAGGCGCTGACGGGCGAGGTGGTGAGTCAGGGCGTGGACGTATGCCG
GCGCATGTGCGGGGGCCACGGCTACCTGCTCGCCTCGGGGCTTCCGGAGG
TGTTCTCAAACTACACGGCCGTGCAGACCTTCGAAGGCACCGCCCAGGTA
CTCGAACCTCAGCTGGCACGTTTCATCTTGCGCTTGAGCATGGCGCCGAC
GGAGCGGCCCAAGGCTTCCGGGAGGGGGGCAGCAACCGCGGCCAAGGCCC
CTTTCGCCCTCTCCTCGGACTTCGACTACGTCCCCCTGGCAGCAGGCAAG
ACATTCGTGCGATGCCGGGCCGCGACGCCGGTGGCCTTTCTCGATCCTGC
CTTTCAGATCGAAGCATACGAGGCGCGGGTCTCCGCTCTTCTTTTGCTGG
CAAGGGAGGAAGTCGAAGCTGACTTGCGGGGCGGAGAAGGTGGCTTGGCC
GCGTCGATGATGAAGAACGGGGTGCTGTTCGGACGTCTGTCAAGGGCCCA
CTGCCAGCTGGTTCTCCTGAGACGCTTCCACGAGGCGGTCGCCCGCGAGG
AAGGGCGGATGACGATGACGACAGCCAGAAACGGGGGAGTCGACGGGGAA
GGGAATGGCGGGCGTATCGACCTGGGCGCGGCCGATGGGAGCGAGGAGGG
CGAGTCGGAGGACAGGGAGGAGACCGTCACGGTGGGGCCCGCGGAGGTTC
GGGTCTTACGCAACCTCTGCCATTTGTTCGCGCTTTCGGGGATGGAGCGA
GACATGGCCGAGTTCCGGGCGCGGGACTACTTGTCGTCCGGACAAGCAGA
GATGGTGAGCAGGGAGGTGCTGCGCCTGAACCGCACCGTACGCGCGGAGG
CCGTGAGTTTGGTCGACGCCTGGCTGCTTTCCGATAAGCTTCTGGGCTCG
GCGCTGGGACGTGCCGACGGACGGGTGTACGGAGCTCTCTTTGAAGAGGC
TTTGCGGTCGCCCTTGAACGACAAGGAGGTCAGCGAGGCCTACACTCTGC
ACTGGAGGAGGCTTCTGATGGCAGGGGACTGCGCATGGGAAAACGCGCGA
CTGTAG

Synonyms

Publications