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Properties
| Property Name | Value |
|---|
| Product | puff-specific protein bx42 |
| Orig transcript id | gnl|cribi|Naga_100036g26.2551.mrna |
| Orig protein id | gnl|cribi|Naga_100036g26.2551 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:666115..668875 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2559 ID=rna2559|Name=rna2559|organism=Nannochloropsis gaditana|type=mRNA|length=947bp
TGCTCATCGGTATTTGAATTGCGTCCTCGTTTCCCTCTTGTTCGTTTTCT
CACCGTGGCGGCGAAAGCGACCTCCCCCCCCTCACATGCCGGGACGCATT
ACTTCGGGGAAAAACTTGTTAAACGAATCGACATTGACCTTTCAGTACCT
TTTTAGCCCTTGTACAGGAGCATCTGCGTTAGGCGATGGTGAACGAGTTC
TGCTCATGCTTAGCTCACCTCTGGGAGTCTTCGGAGGAACACGAGAGGTC
ACAAAAGCGGGGCGGAGGCGCCGCGCGGTCCGTGAACATGACCCGAGGGG
ACACTGGAAAAGGCACAGAGGACGCCACAACTCCCCGAGTCAAGCATGAT
ATAAATATGAGAGGCAGTCAAGTTCGTGTCAAGGAACTAGCAAACGGACG
GTTCCTTATAAGCGGTGCGGGGCTTACGATCGCTTCCCTGCCTTTGGAGC
AAGACTGTAGCTTTTGGCAGGTGAAGGTGCTGCAACCAGGCCGCTTCAGT
ATGGGAGTTTCTCGCGCGGCCGAGGCGAGCGCACTGGAAGGTATGAAAGA
GCCTCTTGAGTGGGCGCTGCGCGTGAATAGTGCGGAGGCGCAAAGTGAAC
GTGAGGAGGATGGAGAGAGCGCCATGGTAGTCAGCAGGGACGGAGACATC
TTCTCCTGTGTCTTCGATCAGTCGTCCTGTCCCATGCTCCGGTTCTTTCA
GAATGGGAAGGAGTTGGAGAAGCAGGCCATCAATCGAGTACGAGGTCTGG
TGTTCCCGGCCCTCGAGCTATTCGGGGATGGGGTGGAGCTTTCTTTCTTG
TTCCACGAAAGCGAGTGGTCTTACCCGCCCCCTTCCAGTCGGTACATGAT
GATTCTTGAGACGCGAAGAATGATATAGGCGAAACATGCCGACGGTAAAT
AAGAAAGCGCACATTCCATGTGTAAAAGTATTGTATTTTATTGCCAG back to topprotein sequence of rna2559 >rna2559-protein ID=rna2559-protein|Name=rna2559|organism=Nannochloropsis gaditana|type=polypeptide|length=668bp
MLLTNYNHGHEYETGPRIQSCQCNRSSSSGHLGTMATLGLSRLLPKPTQT
YQVHKDDPSPTALARLEISGKKVIPPYGERNGFVPRAVGDFGDGGAFPEV
HVVQYPLNMGKKDAASASNAIVSVDVAADGKVNFDAIVRQGTNRNKIVHS
KLSDMRGGDADENVLSKPTPEEEAEQAAKTKSALEALIGGKIAAARPVQL
AKAPGSEEPTYVRYTPNPNAPGYNTNAKQRVIELVDAQVDPMEPAKHKHK
KVPRGPPEDPVPVLHSPPRKVSVEDQEAWKIPPCISNWKNAKGYTIPLDK
RLAADGRGLQETTINPKFAALPQALYIAEDKAREQIAARAKIDQKIKKLE
REQKEQELRELAARSRMARAGVPGEVGGRREEESVGHYGRAGGGAGGVRE
RVEDVGEERGAEVVRGMTEEERVAAAQRDKLRVERRKELERDMRKDNMRG
AMRKGKLDRDGERDISEKIALGMHVGSAKLTGDEVYDSRLFNQGGGVEAG
FGGEDEYNVYNKALFDKGTGSSIYRPRGDVGVGGLDEDGGADAEAQYKKI
ANADKFRPDRGFAGADYHGGGQARDKPVQFEREGGREGGGRESGGSGRRE
DEEDFFGVGDFVEEGGGGKRKDPLGRIGGRGLMSAGTAGSKEELEMGSKR
QKINFTEAGGGGRRERSP back to topmRNA from alignment at CM002459.1:666115..668875- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2559 ID=rna2559|Name=rna2559|organism=Nannochloropsis gaditana|type=mRNA|length=2761bp|location=Sequence derived from alignment at CM002459.1:666115..668875- (Nannochloropsis gaditana)
GCCATGGGAGGCAGGGTTCTTGTTGCCAGGGGTGAGGCGGAGGATATCCG
AAGGGAGATATGGAACGCGACGCCTCTCGACGCAAATGAGGCTGTAGGAA
CAAGTTCCTAAGAAGTGATGGCATGTGAAATAGCCATGGTGTCGTGCTGA
TGGCTGGGAGTGAAAGCTTGCGGTCGAAGAAGGGCGTAAAGCCGAGGCGA
AGATGCCTGGACTCCGAGGGGATGACTCTTCCCTTTCTTTTCCCGCGTGC
CTGATCATGTATGCCCTACGCTCGGATGCTCCATCTTACTGTGGCATCAC
CTCATTCATGATACTACGGGTGGAACGTGTTGGTAGCCGCATGCTACGGC
AGACGCCGAAGGTGAAGATAGCACACATTGGTGCCTAGCTACGGCCTCTC
ACGCCTAATTCCAACACATGCTACTTACTAACTACAACCATGGACACGAA
TACGAGACAGGGCCGCGCATTCAGAGCTGTCAGTGTAACAGATCAAGTTC
ATCTGGCCACCTAGGTACAATGGCCACCCTGGGGCTTTCAAGGCTTTTGC
CCAAACCCACCCAGACTTATCAAGTCCATAAAGACGACCCGTCCCCCACC
GCCCTGGCGCGCCTCGAGGTAAGGGCGAAAGTCTGCCCGGAGTATGACGG
GCTTAGGCTTTACGAAGTGGCGAGGAAGCATTACAGCGGGGGAGACATGT
GCTGTTTTCACACTCATATCTGATCCCTCTTCTACCACCTCATGCTCGCA
GATTTCAGGCAAGAAGGTAATCCCACCGTATGGAGAACGCAATGGCTTTG
TGCCCCGAGCTGTGGGTGATTTTGGTGACGGAGGAGCTTTCCCGGAAGTG
CACGTGGTACAATACCCGCTGAATATGGGCAAGAAAGACGCCGCCAGCGC
CAGTAATGCCATTGTGTCTGTGGACGTGGCTGCGGACGGCAAGGTGAATT
TCGACGCGATCGTCAGGCAAGGCACAAACCGCAACAAGATCGTCCATTCC
AAGCTCTCTGACATGAGGGGCGGGGACGCGGATGAGAACGTGCTGAGCAA
GCCCACCCCGGAGGAGGAGGCGGAGCAGGCGGCCAAGACCAAGAGCGCCC
TGGAGGCCTTGATAGGAGGGAAAATTGCAGCAGCGCGTCCTGTGCAGCTC
GCGAAAGCCCCAGGCTCGGAAGAGCCGACGTACGTGCGCTACACGCCGAA
CCCTAACGCACCGGGCTACAACACGAACGCGAAGCAGCGTGTGATCGAGC
TGGTGGACGCCCAGGTGGACCCGATGGAGCCCGCCAAGCACAAGCACAAG
AAGGTGCCCCGAGGCCCGCCCGAGGACCCTGTCCCCGTCCTGCACTCGCC
GCCGCGGAAGGTGTCGGTGGAGGACCAGGAAGCCTGGAAGATCCCCCCCT
GCATTTCGAACTGGAAGAACGCCAAGGGCTACACCATCCCCTTGGACAAG
CGCCTGGCCGCGGACGGGCGGGGTCTGCAGGAGACGACGATCAACCCGAA
ATTCGCGGCACTGCCTCAGGCCTTGTACATCGCGGAGGACAAGGCTCGGG
AGCAGATCGCGGCCCGCGCGAAGATCGATCAGAAGATCAAGAAGCTGGAG
AGAGAGCAGAAGGAGCAGGAGCTGCGAGAGCTGGCGGCCCGGTCGCGGAT
GGCGAGGGCGGGGGTGCCGGGCGAGGTCGGCGGGCGAAGAGAGGAGGAGT
CAGTGGGGCACTATGGAAGGGCGGGGGGAGGGGCCGGGGGAGTGCGGGAG
CGAGTGGAGGATGTGGGGGAGGAGAGGGGGGCGGAGGTGGTAAGAGGGAT
GACGGAGGAGGAGCGCGTGGCGGCGGCGCAGCGAGACAAATTGAGGGTCG
AGCGGCGGAAGGAGCTAGAGAGAGACATGCGGAAGGACAACATGCGGGGG
GCGATGCGCAAAGGCAAGCTAGACCGGGACGGGGAGCGCGATATCTCGGA
GAAGATCGCCTTGGGCATGCACGTCGGGTCCGCCAAACTCACCGGGGACG
AGGTGTACGACTCCCGCCTTTTCAACCAGGGGGGCGGTGTGGAGGCGGGC
TTTGGGGGGGAGGACGAGTACAACGTGTACAACAAGGCTCTGTTCGACAA
AGGCACCGGCAGCAGCATCTATCGGCCGCGCGGGGACGTGGGAGTGGGCG
GTCTGGACGAGGACGGGGGGGCGGACGCGGAGGCTCAGTACAAGAAGATC
GCCAACGCGGACAAGTTCCGGCCCGACCGAGGGTTCGCGGGCGCGGACTA
CCACGGGGGGGGCCAAGCCCGGGATAAGCCCGTGCAGTTCGAGAGGGAGG
GAGGGCGGGAAGGGGGGGGCAGGGAGAGTGGAGGGAGTGGCCGGCGGGAG
GATGAGGAAGACTTCTTCGGCGTGGGGGACTTCGTGGAGGAGGGCGGGGG
GGGGAAGAGGAAGGACCCGTTGGGACGGATTGGGGGCAGGGGCCTGATGA
GTGCGGGCACGGCCGGCTCGAAAGAGGAACTGGAGATGGGGAGCAAGCGG
CAGAAAATAAATTTCACCGAGGCGGGGGGAGGGGGGCGGCGGGAGCGGTC
GCCGTAAGGGGAAGGCAGGGCAAGGATTGAGTGGGAGGGTGTGGGTGGGG
GAGAATTTGGCTGGCAATAAAATACAATACTTTTACACATGGAATGTGCG
CTTTCTTATTTACCGTCGGCATGTTTCGCCTATATCATTCTTCGCGTCTC
AAGAATCATCATGTACCGACTGGAAGGGGGCGGGTAAGACCACTCGCTTT
CGTGGAACAAG back to topCoding sequence (CDS) from alignment at CM002459.1:666115..668875- >rna2559 ID=rna2559|Name=rna2559|organism=Nannochloropsis gaditana|type=CDS|length=4014bp|location=Sequence derived from alignment at CM002459.1:666115..668875- (Nannochloropsis gaditana)
ATTTCAGGCAAGAAGGTAATCCCACCGTATGGAGAACGCAATGGCTTTGT
GCCCCGAGCTGTGGGTGATTTTGGTGACGGAGGAGCTTTCCCGGAAGTGC
ACGTGGTACAATACCCGCTGAATATGGGCAAGAAAGACGCCGCCAGCGCC
AGTAATGCCATTGTGTCTGTGGACGTGGCTGCGGACGGCAAGGTGAATTT
CGACGCGATCGTCAGGCAAGGCACAAACCGCAACAAGATCGTCCATTCCA
AGCTCTCTGACATGAGGGGCGGGGACGCGGATGAGAACGTGCTGAGCAAG
CCCACCCCGGAGGAGGAGGCGGAGCAGGCGGCCAAGACCAAGAGCGCCCT
GGAGGCCTTGATAGGAGGGAAAATTGCAGCAGCGCGTCCTGTGCAGCTCG
CGAAAGCCCCAGGCTCGGAAGAGCCGACGTACGTGCGCTACACGCCGAAC
CCTAACGCACCGGGCTACAACACGAACGCGAAGCAGCGTGTGATCGAGCT
GGTGGACGCCCAGGTGGACCCGATGGAGCCCGCCAAGCACAAGCACAAGA
AGGTGCCCCGAGGCCCGCCCGAGGACCCTGTCCCCGTCCTGCACTCGCCG
CCGCGGAAGGTGTCGGTGGAGGACCAGGAAGCCTGGAAGATCCCCCCCTG
CATTTCGAACTGGAAGAACGCCAAGGGCTACACCATCCCCTTGGACAAGC
GCCTGGCCGCGGACGGGCGGGGTCTGCAGGAGACGACGATCAACCCGAAA
TTCGCGGCACTGCCTCAGGCCTTGTACATCGCGGAGGACAAGGCTCGGGA
GCAGATCGCGGCCCGCGCGAAGATCGATCAGAAGATCAAGAAGCTGGAGA
GAGAGCAGAAGGAGCAGGAGCTGCGAGAGCTGGCGGCCCGGTCGCGGATG
GCGAGGGCGGGGGTGCCGGGCGAGGTCGGCGGGCGAAGAGAGGAGGAGTC
AGTGGGGCACTATGGAAGGGCGGGGGGAGGGGCCGGGGGAGTGCGGGAGC
GAGTGGAGGATGTGGGGGAGGAGAGGGGGGCGGAGGTGGTAAGAGGGATG
ACGGAGGAGGAGCGCGTGGCGGCGGCGCAGCGAGACAAATTGAGGGTCGA
GCGGCGGAAGGAGCTAGAGAGAGACATGCGGAAGGACAACATGCGGGGGG
CGATGCGCAAAGGCAAGCTAGACCGGGACGGGGAGCGCGATATCTCGGAG
AAGATCGCCTTGGGCATGCACGTCGGGTCCGCCAAACTCACCGGGGACGA
GGTGTACGACTCCCGCCTTTTCAACCAGGGGGGCGGTGTGGAGGCGGGCT
TTGGGGGGGAGGACGAGTACAACGTGTACAACAAGGCTCTGTTCGACAAA
GGCACCGGCAGCAGCATCTATCGGCCGCGCGGGGACGTGGGAGTGGGCGG
TCTGGACGAGGACGGGGGGGCGGACGCGGAGGCTCAGTACAAGAAGATCG
CCAACGCGGACAAGTTCCGGCCCGACCGAGGGTTCGCGGGCGCGGACTAC
CACGGGGGGGGCCAAGCCCGGGATAAGCCCGTGCAGTTCGAGAGGGAGGG
AGGGCGGGAAGGGGGGGGCAGGGAGAGTGGAGGGAGTGGCCGGCGGGAGG
ATGAGGAAGACTTCTTCGGCGTGGGGGACTTCGTGGAGGAGGGCGGGGGG
GGGAAGAGGAAGGACCCGTTGGGACGGATTGGGGGCAGGGGCCTGATGAG
TGCGGGCACGGCCGGCTCGAAAGAGGAACTGGAGATGGGGAGCAAGCGGC
AGAAAATAAATTTCACCGAGGCGGGGGGAGGGGGGCGGCGGGAGCGGTCG
CCGTAAATGCTACTTACTAACTACAACCATGGACACGAATACGAGACAGG
GCCGCGCATTCAGAGCTGTCAGTGTAACAGATCAAGTTCATCTGGCCACC
TAGGTACAATGGCCACCCTGGGGCTTTCAAGGCTTTTGCCCAAACCCACC
CAGACTTATCAAGTCCATAAAGACGACCCGTCCCCCACCGCCCTGGCGCG
CCTCGAGATTTCAGGCAAGAAGGTAATCCCACCGTATGGAGAACGCAATG
GCTTTGTGCCCCGAGCTGTGGGTGATTTTGGTGACGGAGGAGCTTTCCCG
GAAGTGCACGTGGTACAATACCCGCTGAATATGGGCAAGAAAGACGCCGC
CAGCGCCAGTAATGCCATTGTGTCTGTGGACGTGGCTGCGGACGGCAAGG
TGAATTTCGACGCGATCGTCAGGCAAGGCACAAACCGCAACAAGATCGTC
CATTCCAAGCTCTCTGACATGAGGGGCGGGGACGCGGATGAGAACGTGCT
GAGCAAGCCCACCCCGGAGGAGGAGGCGGAGCAGGCGGCCAAGACCAAGA
GCGCCCTGGAGGCCTTGATAGGAGGGAAAATTGCAGCAGCGCGTCCTGTG
CAGCTCGCGAAAGCCCCAGGCTCGGAAGAGCCGACGTACGTGCGCTACAC
GCCGAACCCTAACGCACCGGGCTACAACACGAACGCGAAGCAGCGTGTGA
TCGAGCTGGTGGACGCCCAGGTGGACCCGATGGAGCCCGCCAAGCACAAG
CACAAGAAGGTGCCCCGAGGCCCGCCCGAGGACCCTGTCCCCGTCCTGCA
CTCGCCGCCGCGGAAGGTGTCGGTGGAGGACCAGGAAGCCTGGAAGATCC
CCCCCTGCATTTCGAACTGGAAGAACGCCAAGGGCTACACCATCCCCTTG
GACAAGCGCCTGGCCGCGGACGGGCGGGGTCTGCAGGAGACGACGATCAA
CCCGAAATTCGCGGCACTGCCTCAGGCCTTGTACATCGCGGAGGACAAGG
CTCGGGAGCAGATCGCGGCCCGCGCGAAGATCGATCAGAAGATCAAGAAG
CTGGAGAGAGAGCAGAAGGAGCAGGAGCTGCGAGAGCTGGCGGCCCGGTC
GCGGATGGCGAGGGCGGGGGTGCCGGGCGAGGTCGGCGGGCGAAGAGAGG
AGGAGTCAGTGGGGCACTATGGAAGGGCGGGGGGAGGGGCCGGGGGAGTG
CGGGAGCGAGTGGAGGATGTGGGGGAGGAGAGGGGGGCGGAGGTGGTAAG
AGGGATGACGGAGGAGGAGCGCGTGGCGGCGGCGCAGCGAGACAAATTGA
GGGTCGAGCGGCGGAAGGAGCTAGAGAGAGACATGCGGAAGGACAACATG
CGGGGGGCGATGCGCAAAGGCAAGCTAGACCGGGACGGGGAGCGCGATAT
CTCGGAGAAGATCGCCTTGGGCATGCACGTCGGGTCCGCCAAACTCACCG
GGGACGAGGTGTACGACTCCCGCCTTTTCAACCAGGGGGGCGGTGTGGAG
GCGGGCTTTGGGGGGGAGGACGAGTACAACGTGTACAACAAGGCTCTGTT
CGACAAAGGCACCGGCAGCAGCATCTATCGGCCGCGCGGGGACGTGGGAG
TGGGCGGTCTGGACGAGGACGGGGGGGCGGACGCGGAGGCTCAGTACAAG
AAGATCGCCAACGCGGACAAGTTCCGGCCCGACCGAGGGTTCGCGGGCGC
GGACTACCACGGGGGGGGCCAAGCCCGGGATAAGCCCGTGCAGTTCGAGA
GGGAGGGAGGGCGGGAAGGGGGGGGCAGGGAGAGTGGAGGGAGTGGCCGG
CGGGAGGATGAGGAAGACTTCTTCGGCGTGGGGGACTTCGTGGAGGAGGG
CGGGGGGGGGAAGAGGAAGGACCCGTTGGGACGGATTGGGGGCAGGGGCC
TGATGAGTGCGGGCACGGCCGGCTCGAAAGAGGAACTGGAGATGGGGAGC
AAGCGGCAGAAAATAAATTTCACCGAGGCGGGGGGAGGGGGGCGGCGGGA
GCGGTCGCCGTAAATGCTACTTACTAACTACAACCATGGACACGAATACG
AGACAGGGCCGCGCATTCAGAGCTGTCAGTGTAACAGATCAAGTTCATCT
GGCCACCTAGGTACAATGGCCACCCTGGGGCTTTCAAGGCTTTTGCCCAA
ACCCACCCAGACTTATCAAGTCCATAAAGACGACCCGTCCCCCACCGCCC
TGGCGCGCCTCGAG back to top
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