rna2558, rna2558 (mRNA) Nannochloropsis gaditana

Overview
Namerna2558
Unique Namerna2558
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1794
Alignment locationCM002459.1:665174..666265 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100036g27.2538.mrna
Orig protein idgnl|cribi|Naga_100036g27.2538
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:665174..666265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100036g27gene2445Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2558rna2558-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28118.1cds2550Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2558 ID=rna2558|Name=rna2558|organism=Nannochloropsis gaditana|type=mRNA|length=1794bp
ATGAGCAGAACTCGTTCACCATCGCCTAACGCAGATGCTCCTGTACAAGG
GCTAAAAAGGCGACAACATCTCGTTTTGCGCGCTGAAGTTGCATCGTTAA
GACGTGAGAGTGAAAGGGGGGGCAACAACAACGTCTTCGGCCCATTAGCT
ACCATCACGTACATGCGCAAAATACGCCCAGTCATGAACCGGCATCCGTC
TATCCTTGTGGTCATGTATGGATTGCTTGCCTGTGTCAATGTTCAGTCAC
AGCGCTTCCATGGGGGTCTGACATCGCACTGGGCCTTGCCTGCCGCCCAT
GACCCCTCACGACCAGGGATAAGCGATTGCTCAGAGAGGTACTTCGAGCA
GCCGATCGACCATTTTGCATACCATCCGGAGAACAACCTTGAGGGTCTCA
CTTTCCAGCAACGCTACTTCGTCTGCGGCGAGTTGTGGTGGGGAGGGCTT
GGAGCCCCCATTTTCTTTTACACTGGCAATGAAGCAGACGTCACCCTGTA
CTTGAACGCCTCTGGGCTCATGTGGGAGAATGCCCCGGAGTTCGGGGCCC
TTCTCGTCTTCGCCGAGCACCGGTATTATGGGAAAAGTCAACCACTTCAG
CCTTTCACAGCACATAAAATGGACTATCTGAGCTCCGAGCAGGCTCTAGC
CGACTACGCCCGGCTCATCATCGCGCTCAAGACAGAGCTCAATTCTCCCG
ATTCTCCTGTGATCGCCTTCGGTGGGAGCTACGGAGGCATGCTAGCGAGC
TGGTGGCGCCTCCTGTACCCTCACCTCGTCAGTGGGGCGATCGCCGGCTC
AGCGCCCGTGCTGGATTTTGAGCCGGAGGTTGGCGAGGAGGGAATCGAGT
CCTTCAGCTACATCGTTACCCGCGACGCGTCTCCTGAAGGAGGGTCCAAC
GCGTATTGCGCCGACAATGTCAGGGCGGCCTGGCCCGTTATCAAGGACCT
GGCTGCAAGCGTGACCGGCAGGCAGGAACTGACGGAGCGATTTCGGATCT
GTCAAGGGGCACTTGCGACGGCAGAGGACGTCGACTTACTGTTGGGATGG
TTACAGAGTGCCTGGGCCTACATGGCCATGGGCAACTACCCCTTCCCCTC
CACCTATGTGCTGAACGGACGAGGAACCCTCCCTGCCTGGCCCGTTCGCG
TCGCCTGCGAATTCTTGAACTTCCCCACCACTCTCTCCAGCAATGTCACT
CTCCTAGAGGGCCTCAGGAACGCCGTCTCCGTGTACTACAACTACTCCAG
ACCGGATGGGGAGGCCCCCATCCAATGCTTCGACCTTGCGGCAGGCGTCA
ACAAAGAGTCGCAGATGGTGGAGGACCATTGGACGTATCAGTTCTGTACG
GAAATGTTTATGCCTAGTGGTAGCGACGGTATCCGAGATATGTTCTGGCC
GGCACCGTGGGATGCCAATGCTCAGTCAGATGCCTGTTTTAGGCGCTTTG
GTGTACACCCTCGCCGAACGTGGGCTGTTACCATGTATGGAGGTCTAAAG
GCATTAGAAACAGCATCCAATATAGTCTTCTCGAACGGCCTTCTAGATCC
CTGGTCCGGAACAGGTGTTTTGCACAACATATCGGACACAGTTGTAGCCC
TCACATTAAAAGAAGGCGCTCATCATTTGGACTTAATGTTTTCTACTTCA
GATGATCCCGAGGAAGTTAAGGAAGTGAGAAAGACGGAGCTTGCTCACAT
TGCGCGCTGGGTCATGGAGGCGGGTGAAGCCACTGAATGGGCTAAGGAGA
AGCGCACAGTCAAAGATATGCGGAAAATGCTGAGGACTGTGTAA
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protein sequence of rna2558

>rna2558-protein ID=rna2558-protein|Name=rna2558|organism=Nannochloropsis gaditana|type=polypeptide|length=230bp
MVNEFCSCLAHLWESSEEHERSQKRGGGAARSVNMTRGDTGKGTEDATTP
RVKHDINMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQ
PGRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAMVVS
RDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGV
ELSFLFHESEWSYPPPSSRYMMILETRRMI
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mRNA from alignment at CM002459.1:665174..666265+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2558 ID=rna2558|Name=rna2558|organism=Nannochloropsis gaditana|type=mRNA|length=1092bp|location=Sequence derived from alignment at CM002459.1:665174..666265+ (Nannochloropsis gaditana)
TGCTCATCGGTATTTGAATTGCGTCCTCGTTTCCCTCTTGTTCGTTTTCT
CACCGTGGCGGCGAaagcgacctcccccccctcacaTGCCGGGACGCATT
ACTTCGGGGAAAAACTTGTTAAACGAATCGACATTGACCTTTCAGTACCT
TTTTAGCCCTTGTACAGGAGCATCTGCGTTAGGCGATGGTGAACGAGTTC
TGCTCATGCTTAGCTCACCTCTGGGAGTCTTCGGAGGAACACGAGAGGTC
ACAAaagcggggcggaggcgccgCGCGGTCCGTGAACATGACCCGAGGGG
ACACTGGAAAAGGCACAGAGGACGCCACAACTCCCCGAGTCAAGCATGAT
ATAAATATGAGAGGCAGTCAAGTTCGTGTCAAGGAACTAGCAAACGGACG
GTTCCTTATAAGCGGTGCGGGGCTTACGATCGCTTCCCTGCCTTTGGAGC
AAGGTCAGTACATGAGCGCActttttccattcctttATTAAAAGGCCACA
GCTCTGACATCTCATAAGCAAACGTGGTAACCATGATTTCCCCCTGGCGC
ATACCCGACAAATAAACGGCTGAACGCTTTCCCTTCACCCAAATTTAGAC
TGTAGCTTTTGGCAGGTGAAGGTGCTGCAACCAGGCCGCTTCAGTATGGG
AGTTTCTCGCGCGGCCGAGGCGAGCGCACTGGAAGGTATGAAAGAGCCTC
TTGAGTGGGCGCTGCGCGTGAATAGTGCGGAGGCGCAAAGTGAacgtgag
gaggatggagagagcGCCATGGTAGTCAGCAGGGACGGAGACATCTTCTC
CTGTGTCTTCGATCAGTCGTCCTGTCCCATGCTCCGGTTCTTTCAGAATG
GGAAGGAGTTGGAGAAGCAGGCCATCAATCGAGTACGAGGTCTGGTGTTC
CCGGCCCTCGAGCTATTCGGGGATGGGGTGGAGCTTTCTTTCTTGTTCCA
CGAAAGCGAGTGGTCTTACCCGCCCCCTTCCAGTCGGTACATGATGATTC
TTGAGACGCGAAGAATGATATAGGCGAAACATGCCGACGGTAAATAAGAA
AGCGCACATTCCATGTGTAAAAGTATTGTATTTTATTGCCAG
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Coding sequence (CDS) from alignment at CM002459.1:665174..666265+

>rna2558 ID=rna2558|Name=rna2558|organism=Nannochloropsis gaditana|type=CDS|length=1386bp|location=Sequence derived from alignment at CM002459.1:665174..666265+ (Nannochloropsis gaditana)
ATGGTGAACGAGTTCTGCTCATGCTTAGCTCACCTCTGGGAGTCTTCGGA
GGAACACGAGAGGTCACAAaagcggggcggaggcgccgCGCGGTCCGTGA
ACATGACCCGAGGGGACACTGGAAAAGGCACAGAGGACGCCACAACTCCC
CGAGTCAAGCATGATATAAATATGAGAGGCAGTCAAGTTCGTGTCAAGGA
ACTAGCAAACGGACGGTTCCTTATAAGCGGTGCGGGGCTTACGATCGCTT
CCCTGCCTTTGGAGCAAGACTGTAGCTTTTGGCAGGTGAAGGTGCTGCAA
CCAGGCCGCTTCAGTATGGGAGTTTCTCGCGCGGCCGAGGCGAGCGCACT
GGAAGGTATGAAAGAGCCTCTTGAGTGGGCGCTGCGCGTGAATAGTGCGG
AGGCGCAAAGTGAacgtgaggaggatggagagagcGCCATGGTAGTCAGC
AGGGACGGAGACATCTTCTCCTGTGTCTTCGATCAGTCGTCCTGTCCCAT
GCTCCGGTTCTTTCAGAATGGGAAGGAGTTGGAGAAGCAGGCCATCAATC
GAGTACGAGGTCTGGTGTTCCCGGCCCTCGAGCTATTCGGGGATGGGGTG
GAGCTTTCTTTCTTGTTCCACGAAAGCGAGTGGTCTTACCCGCCCCCTTC
CAGTCGGTACATGATGATTCTTGAGACGCGAAGAATGATATAGATGGTGA
ACGAGTTCTGCTCATGCTTAGCTCACCTCTGGGAGTCTTCGGAGGAACAC
GAGAGGTCACAAaagcggggcggaggcgccgCGCGGTCCGTGAACATGAC
CCGAGGGGACACTGGAAAAGGCACAGAGGACGCCACAACTCCCCGAGTCA
AGCATGATATAAATATGAGAGGCAGTCAAGTTCGTGTCAAGGAACTAGCA
AACGGACGGTTCCTTATAAGCGGTGCGGGGCTTACGATCGCTTCCCTGCC
TTTGGAGCAAGACTGTAGCTTTTGGCAGGTGAAGGTGCTGCAACCAGGCC
GCTTCAGTATGGGAGTTTCTCGCGCGGCCGAGGCGAGCGCACTGGAAGGT
ATGAAAGAGCCTCTTGAGTGGGCGCTGCGCGTGAATAGTGCGGAGGCGCA
AAGTGAacgtgaggaggatggagagagcGCCATGGTAGTCAGCAGGGACG
GAGACATCTTCTCCTGTGTCTTCGATCAGTCGTCCTGTCCCATGCTCCGG
TTCTTTCAGAATGGGAAGGAGTTGGAGAAGCAGGCCATCAATCGAGTACG
AGGTCTGGTGTTCCCGGCCCTCGAGCTATTCGGGGATGGGGTGGAGCTTT
CTTTCTTGTTCCACGAAAGCGAGTGGTCTTACCCGCCCCCTTCCAGTCGG
TACATGATGATTCTTGAGACGCGAAGAATGATATAG
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Synonyms
Publications