EWM28118.1, cds2550 (CDS) Nannochloropsis gaditana

Overview
NameEWM28118.1
Unique Namecds2550
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:665359..665626 +
Alignment locationCM002459.1:665772..666196 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28118.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100036g27.2538.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:665359..665626 +
CM002459.1supercontigCM002459.1:665772..666196 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|585110462|gb|EWM28118.1| (hypothetical protein Naga_100036g27 [Nannochloropsis gaditana])

HSP 1 Score: 474.937 bits (1221), Expect = 1.302e-169
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0
Query:    1 MVNEFCSCLAHLWESSEEHERSQKRGGGAARSVNMTRGDTGKGTEDATTPRVKHDINMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMMILETRRMI 230
            MVNEFCSCLAHLWESSEEHERSQKRGGGAARSVNMTRGDTGKGTEDATTPRVKHDINMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMMILETRRMI
Sbjct:    1 MVNEFCSCLAHLWESSEEHERSQKRGGGAARSVNMTRGDTGKGTEDATTPRVKHDINMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMMILETRRMI 230          
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|553189200|ref|XP_005854951.1| (hypothetical protein NGA_2032100, partial [Nannochloropsis gaditana CCMP526] >gi|422294109|gb|EKU21409.1| hypothetical protein NGA_2032100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 207.223 bits (526), Expect = 1.308e-65
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
Query:  124 LEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMM 222
            LEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMM
Sbjct:    1 LEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMM 99          
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|1129210484|gb|OLQ11828.1| (hypothetical protein AK812_SmicGene4258 [Symbiodinium microadriaticum])

HSP 1 Score: 93.9745 bits (232), Expect = 5.355e-19
Identity = 65/195 (33.33%), Postives = 100/195 (51.28%), Query Frame = 0
Query:   45 EDAT-TPRVKHDINMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAMVVSRD--------GDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMMILETRRMI 230
            E+AT  P  K  +  RG QV+V + A G  L++G G+ +A   +EQD ++W+++VL+PG  S         SA  G+      AL +N     S +  DG S+  +  D         D+    F Q   P LRF++NG E+ +  + R+RG  FPA  +  DG EL  +F  S ++  PP  R++ I+  R+MI
Sbjct:  187 EEATLAPPPKVQVGKRGGQVKVSQDAAG-ILLTGKGVALAGTVIEQDAAYWEIRVLEPGTTSR--------SAFVGV------ALDLNGQRLDS-KLGDGTSSWALGGDLAGGALQKNDVIGVAFGQGDIPNLRFYRNGTEIREAEVLRIRGEAFPAFSV-SDGAELLVVFESSGFAQEPP-GRHVAIVAPRKMI 363          
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|676383637|ref|XP_009035097.1| (hypothetical protein AURANDRAFT_62846 [Aureococcus anophagefferens] >gi|323454414|gb|EGB10284.1| hypothetical protein AURANDRAFT_62846 [Aureococcus anophagefferens])

HSP 1 Score: 82.8037 bits (203), Expect = 4.975e-16
Identity = 57/175 (32.57%), Postives = 84/175 (48.00%), Query Frame = 0
Query:   50 PRVKHDINMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALEG--MKEPLEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMM 222
            P V+ D N  G  V V+  A G  L  G+G+   S  +EQD ++W++ V   G F +GV R    + L G        WAL               +SA   + +GD+    F Q+  P L FF NG+ LE   +NR+RG VFPA  + G G +L  +F E+ + + PP +   +
Sbjct:   25 PLVRLDRN--GGDVSVESSATGDAL-GGSGVAYTSTAIEQDAAYWELHVEAAGPFRVGVCRELGEAQLGGELGDGQTSWAL---------------DSAAAGAVEGDVIGVAFGQAELPNLSFFLNGELLEHGMVNRIRGEVFPAASVTG-GAKLRCVFDEANFEHAPPRTHSAL 180          
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|1210528971|dbj|GAX12448.1| (hypothetical protein FisN_2Hh282 [Fistulifera solaris])

HSP 1 Score: 78.9518 bits (193), Expect = 1.624e-14
Identity = 52/163 (31.90%), Postives = 84/163 (51.53%), Query Frame = 0
Query:   75 ISGAGLTIASLPLEQDCSFWQVKVLQ-PG---RFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAM--VVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELF-GDGVELSFLFHESEWSYPPPSSRYMMILETRRMI 230
            +SG GL +  + +EQD ++W+  +   PG     S GV+   +      M+E        +SA+A+      G S M  +  +DGD+      QS  PM++F  NG+ L   A+NR RG V+PA+ L   DG+ + F+F ESE+    P +R+  ++  R +I
Sbjct:   50 MSGYGLGLVGVAVEQDAAYWEAHIQHDPGMSQEVSFGVATKKDQQFYRSMEEQ-------DSADAK------GTSLMRSIKVKDGDVVGIAVQQSDLPMVQFLLNGEPLHDLAVNRFRGAVYPAIYLPENDGLTVRFVFRESEFEKLSPHARFGPLIVARGII 199          
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|551629569|ref|XP_005817809.1| (hypothetical protein GUITHDRAFT_156740, partial [Guillardia theta CCMP2712] >gi|428161426|gb|EKX30829.1| hypothetical protein GUITHDRAFT_156740, partial [Guillardia theta CCMP2712])

HSP 1 Score: 72.0182 bits (175), Expect = 6.742e-12
Identity = 53/165 (32.12%), Postives = 85/165 (51.52%), Query Frame = 0
Query:   56 INMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQP-GRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPM-LRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFH-ESEWSYPPPS 217
            I   G  +   +L      +SG+G+ +AS  + QD ++++VK+ +  GR+ +GV + +  S+ E   E   W L        S + E GE        GD+    +DQS  P  LRF+ NG+ LE+  I  +RG VFPA+ +  DG  +   F  E+ ++YPPP+
Sbjct:   49 IGFHGPDIHFDDLR-----VSGSGVALASESISQDKAYFEVKIAKAEGRWGVGVCKQSVHSSDELNVEGEGWCL-------SSVQLEYGE--------GDVIGVTYDQSIFPTALRFYHNGEVLEELTITSIRGEVFPAVHVT-DGAVVDCEFDGENGFAYPPPA 192          
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|551666953|ref|XP_005836237.1| (hypothetical protein GUITHDRAFT_104785 [Guillardia theta CCMP2712] >gi|428180390|gb|EKX49257.1| hypothetical protein GUITHDRAFT_104785 [Guillardia theta CCMP2712])

HSP 1 Score: 72.0182 bits (175), Expect = 7.075e-12
Identity = 53/165 (32.12%), Postives = 85/165 (51.52%), Query Frame = 0
Query:   56 INMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQP-GRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPM-LRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFH-ESEWSYPPPS 217
            I   G  +   +L      +SG+G+ +AS  + QD ++++VK+ +  GR+ +GV + +  S+ E   E   W L        S + E GE        GD+    +DQS  P  LRF+ NG+ LE+  I  +RG VFPA+ +  DG  +   F  E+ ++YPPP+
Sbjct:   49 IGFHGPDIHFDDLR-----VSGSGVALASESISQDKAYFEVKIAKAEGRWGVGVCKQSVHSSDELNVEGEGWCL-------SSVQLEYGE--------GDVIGVTYDQSIFPTALRFYHNGEVLEELTITSIRGEVFPAVHVT-DGAVVDCEFDGENGFAYPPPA 192          
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|929770300|ref|XP_014160083.1| (hypothetical protein SARC_01659 [Sphaeroforma arctica JP610] >gi|906957925|gb|KNC86181.1| hypothetical protein SARC_01659 [Sphaeroforma arctica JP610])

HSP 1 Score: 71.633 bits (174), Expect = 7.931e-12
Identity = 54/178 (30.34%), Postives = 88/178 (49.44%), Query Frame = 0
Query:   50 PRVKHDINMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVS-RAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESA-MVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMMILE 225
            P+V  D N +G  V V    +G   + G G  +A+ PL QD S+W+VKV   G + +GVS R  +  ++   +    W  R N  E     E   + A  +  ++GD+  C +D      L F+ NGK+LE   +  VRG V+P++ +  +G  L   F  + +++PPP     ++ E
Sbjct:   22 PKVLIDENYKGPNVVV----DGGLCVRGRGAALANGPLVQDQSYWEVKVKSGGSWGLGVSLRTEDLKSVPLGQGNQSWVFR-NDGEIYHCGEAYTQYADKIAVKEGDVIGCSYDHVD---LHFYINGKQLECSVMT-VRGKVYPSVYV-DNGAVLDCEF--TNFAHPPPRGYSRIMFE 187          
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|397620737|gb|EJK65882.1| (hypothetical protein THAOC_13218 [Thalassiosira oceanica])

HSP 1 Score: 71.633 bits (174), Expect = 1.780e-11
Identity = 63/264 (23.86%), Postives = 113/264 (42.80%), Query Frame = 0
Query:    6 CSCLAHLWESSEEHERSQKRGGGAARSVNMTRGDTGKGTEDATTPRVKHDIN--MRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALE----GMKEPLEWALRVNSAEAQSER--------EEDGESAMVVSRD--------------GDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFG-----------DGVELSFLFHESEWSYPPPSSRYMMILETRRMI 230
            CSC   +       E SQ+          MT  ++ +G      P   H ++  M    + ++      F +SG+GL +  +P+EQD ++W++ V  PG+ +       +   ++    G ++P  +A++   A  +           EE+G+ A   SRD              GD+      QS  PM++   NG+ L +  INR RG V+PA+ +             +G+ L+F+F E E+    P +R+  +L  + +I
Sbjct:    5 CSCFDAITGGKHSGESSQE----------MTTRNSARGV-----PPASHGLSRAMSAPTISIQ-----GFKVSGSGLALTRIPVEQDAAYWEIHVSIPGQTAPSGDEDGDLQDVDVNDDGEEDP--YAVKFGVATRKDREFYRSLETVEEEGDQAS--SRDDGTFLMRPISNLRHGDVIGVALQQSDLPMIQILLNGEPLLECIINRFRGTVYPAVYMPAGAGGEGERVDDEGMSLNFVFDEDEFKEMSPHARFGPLLVAQGII 244          
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|873241784|emb|CEL92292.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 69.3218 bits (168), Expect = 1.327e-10
Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 0
Query:   56 INMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSE--REEDGESAMVVSRDGDIFSCVFDQSSCPM-LRFFQNGKELEKQAINRVRGLVFPALELF-GDGVELSF 204
            I  RGSQ+    L +GR +  G+G+ ++++P+ QD  +W+V+VL+ GR  +GVSR      LE +    +        +      R    +  + V+ D D+ SC FDQS  P  L F  NGK L+   I+ V+G V PA+ +  G  VE++F
Sbjct:   72 IGARGSQI----LLDGR-VARGSGVVLSNVPIIQDKVYWEVRVLKVGRILVGVSRELVGDYLENLAADGDGRGAGGFGDGVMSWARAFGVQGGIPVAPD-DVISCTFDQSDIPTRLAFRLNGKALDSATISGVKGEVRPAVGIAEGACVEVNF 218          
The following BLAST results are available for this feature:
BLAST of EWM28118.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110462|gb|EWM28118.1|1.302e-169100.00hypothetical protein Naga_100036g27 [Nannochlorops... [more]
gi|553189200|ref|XP_005854951.1|1.308e-65100.00hypothetical protein NGA_2032100, partial [Nannoch... [more]
gi|1129210484|gb|OLQ11828.1|5.355e-1933.33hypothetical protein AK812_SmicGene4258 [Symbiodin... [more]
gi|676383637|ref|XP_009035097.1|4.975e-1632.57hypothetical protein AURANDRAFT_62846 [Aureococcus... [more]
gi|1210528971|dbj|GAX12448.1|1.624e-1431.90hypothetical protein FisN_2Hh282 [Fistulifera sola... [more]
gi|551629569|ref|XP_005817809.1|6.742e-1232.12hypothetical protein GUITHDRAFT_156740, partial [G... [more]
gi|551666953|ref|XP_005836237.1|7.075e-1232.12hypothetical protein GUITHDRAFT_104785 [Guillardia... [more]
gi|929770300|ref|XP_014160083.1|7.931e-1230.34hypothetical protein SARC_01659 [Sphaeroforma arct... [more]
gi|397620737|gb|EJK65882.1|1.780e-1123.86hypothetical protein THAOC_13218 [Thalassiosira oc... [more]
gi|873241784|emb|CEL92292.1|1.327e-1033.99unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2558rna2558Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications