EWM28118.1, cds2550 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|585110462|gb|EWM28118.1| (hypothetical protein Naga_100036g27 [Nannochloropsis gaditana]) HSP 1 Score: 474.937 bits (1221), Expect = 1.302e-169 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0
Query: 1 MVNEFCSCLAHLWESSEEHERSQKRGGGAARSVNMTRGDTGKGTEDATTPRVKHDINMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMMILETRRMI 230
MVNEFCSCLAHLWESSEEHERSQKRGGGAARSVNMTRGDTGKGTEDATTPRVKHDINMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMMILETRRMI
Sbjct: 1 MVNEFCSCLAHLWESSEEHERSQKRGGGAARSVNMTRGDTGKGTEDATTPRVKHDINMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMMILETRRMI 230
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|553189200|ref|XP_005854951.1| (hypothetical protein NGA_2032100, partial [Nannochloropsis gaditana CCMP526] >gi|422294109|gb|EKU21409.1| hypothetical protein NGA_2032100, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 207.223 bits (526), Expect = 1.308e-65 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
Query: 124 LEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMM 222
LEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMM
Sbjct: 1 LEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMM 99
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|1129210484|gb|OLQ11828.1| (hypothetical protein AK812_SmicGene4258 [Symbiodinium microadriaticum]) HSP 1 Score: 93.9745 bits (232), Expect = 5.355e-19 Identity = 65/195 (33.33%), Postives = 100/195 (51.28%), Query Frame = 0
Query: 45 EDAT-TPRVKHDINMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAMVVSRD--------GDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMMILETRRMI 230
E+AT P K + RG QV+V + A G L++G G+ +A +EQD ++W+++VL+PG S SA G+ AL +N S + DG S+ + D D+ F Q P LRF++NG E+ + + R+RG FPA + DG EL +F S ++ PP R++ I+ R+MI
Sbjct: 187 EEATLAPPPKVQVGKRGGQVKVSQDAAG-ILLTGKGVALAGTVIEQDAAYWEIRVLEPGTTSR--------SAFVGV------ALDLNGQRLDS-KLGDGTSSWALGGDLAGGALQKNDVIGVAFGQGDIPNLRFYRNGTEIREAEVLRIRGEAFPAFSV-SDGAELLVVFESSGFAQEPP-GRHVAIVAPRKMI 363
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|676383637|ref|XP_009035097.1| (hypothetical protein AURANDRAFT_62846 [Aureococcus anophagefferens] >gi|323454414|gb|EGB10284.1| hypothetical protein AURANDRAFT_62846 [Aureococcus anophagefferens]) HSP 1 Score: 82.8037 bits (203), Expect = 4.975e-16 Identity = 57/175 (32.57%), Postives = 84/175 (48.00%), Query Frame = 0
Query: 50 PRVKHDINMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALEG--MKEPLEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMM 222
P V+ D N G V V+ A G L G+G+ S +EQD ++W++ V G F +GV R + L G WAL +SA + +GD+ F Q+ P L FF NG+ LE +NR+RG VFPA + G G +L +F E+ + + PP + +
Sbjct: 25 PLVRLDRN--GGDVSVESSATGDAL-GGSGVAYTSTAIEQDAAYWELHVEAAGPFRVGVCRELGEAQLGGELGDGQTSWAL---------------DSAAAGAVEGDVIGVAFGQAELPNLSFFLNGELLEHGMVNRIRGEVFPAASVTG-GAKLRCVFDEANFEHAPPRTHSAL 180
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|1210528971|dbj|GAX12448.1| (hypothetical protein FisN_2Hh282 [Fistulifera solaris]) HSP 1 Score: 78.9518 bits (193), Expect = 1.624e-14 Identity = 52/163 (31.90%), Postives = 84/163 (51.53%), Query Frame = 0
Query: 75 ISGAGLTIASLPLEQDCSFWQVKVLQ-PG---RFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAM--VVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELF-GDGVELSFLFHESEWSYPPPSSRYMMILETRRMI 230
+SG GL + + +EQD ++W+ + PG S GV+ + M+E +SA+A+ G S M + +DGD+ QS PM++F NG+ L A+NR RG V+PA+ L DG+ + F+F ESE+ P +R+ ++ R +I
Sbjct: 50 MSGYGLGLVGVAVEQDAAYWEAHIQHDPGMSQEVSFGVATKKDQQFYRSMEEQ-------DSADAK------GTSLMRSIKVKDGDVVGIAVQQSDLPMVQFLLNGEPLHDLAVNRFRGAVYPAIYLPENDGLTVRFVFRESEFEKLSPHARFGPLIVARGII 199
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|551629569|ref|XP_005817809.1| (hypothetical protein GUITHDRAFT_156740, partial [Guillardia theta CCMP2712] >gi|428161426|gb|EKX30829.1| hypothetical protein GUITHDRAFT_156740, partial [Guillardia theta CCMP2712]) HSP 1 Score: 72.0182 bits (175), Expect = 6.742e-12 Identity = 53/165 (32.12%), Postives = 85/165 (51.52%), Query Frame = 0
Query: 56 INMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQP-GRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPM-LRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFH-ESEWSYPPPS 217
I G + +L +SG+G+ +AS + QD ++++VK+ + GR+ +GV + + S+ E E W L S + E GE GD+ +DQS P LRF+ NG+ LE+ I +RG VFPA+ + DG + F E+ ++YPPP+
Sbjct: 49 IGFHGPDIHFDDLR-----VSGSGVALASESISQDKAYFEVKIAKAEGRWGVGVCKQSVHSSDELNVEGEGWCL-------SSVQLEYGE--------GDVIGVTYDQSIFPTALRFYHNGEVLEELTITSIRGEVFPAVHVT-DGAVVDCEFDGENGFAYPPPA 192
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|551666953|ref|XP_005836237.1| (hypothetical protein GUITHDRAFT_104785 [Guillardia theta CCMP2712] >gi|428180390|gb|EKX49257.1| hypothetical protein GUITHDRAFT_104785 [Guillardia theta CCMP2712]) HSP 1 Score: 72.0182 bits (175), Expect = 7.075e-12 Identity = 53/165 (32.12%), Postives = 85/165 (51.52%), Query Frame = 0
Query: 56 INMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQP-GRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESAMVVSRDGDIFSCVFDQSSCPM-LRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFH-ESEWSYPPPS 217
I G + +L +SG+G+ +AS + QD ++++VK+ + GR+ +GV + + S+ E E W L S + E GE GD+ +DQS P LRF+ NG+ LE+ I +RG VFPA+ + DG + F E+ ++YPPP+
Sbjct: 49 IGFHGPDIHFDDLR-----VSGSGVALASESISQDKAYFEVKIAKAEGRWGVGVCKQSVHSSDELNVEGEGWCL-------SSVQLEYGE--------GDVIGVTYDQSIFPTALRFYHNGEVLEELTITSIRGEVFPAVHVT-DGAVVDCEFDGENGFAYPPPA 192
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|929770300|ref|XP_014160083.1| (hypothetical protein SARC_01659 [Sphaeroforma arctica JP610] >gi|906957925|gb|KNC86181.1| hypothetical protein SARC_01659 [Sphaeroforma arctica JP610]) HSP 1 Score: 71.633 bits (174), Expect = 7.931e-12 Identity = 54/178 (30.34%), Postives = 88/178 (49.44%), Query Frame = 0
Query: 50 PRVKHDINMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVS-RAAEASALEGMKEPLEWALRVNSAEAQSEREEDGESA-MVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMMILE 225
P+V D N +G V V +G + G G +A+ PL QD S+W+VKV G + +GVS R + ++ + W R N E E + A + ++GD+ C +D L F+ NGK+LE + VRG V+P++ + +G L F + +++PPP ++ E
Sbjct: 22 PKVLIDENYKGPNVVV----DGGLCVRGRGAALANGPLVQDQSYWEVKVKSGGSWGLGVSLRTEDLKSVPLGQGNQSWVFR-NDGEIYHCGEAYTQYADKIAVKEGDVIGCSYDHVD---LHFYINGKQLECSVMT-VRGKVYPSVYV-DNGAVLDCEF--TNFAHPPPRGYSRIMFE 187
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|397620737|gb|EJK65882.1| (hypothetical protein THAOC_13218 [Thalassiosira oceanica]) HSP 1 Score: 71.633 bits (174), Expect = 1.780e-11 Identity = 63/264 (23.86%), Postives = 113/264 (42.80%), Query Frame = 0
Query: 6 CSCLAHLWESSEEHERSQKRGGGAARSVNMTRGDTGKGTEDATTPRVKHDIN--MRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALE----GMKEPLEWALRVNSAEAQSER--------EEDGESAMVVSRD--------------GDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFG-----------DGVELSFLFHESEWSYPPPSSRYMMILETRRMI 230
CSC + E SQ+ MT ++ +G P H ++ M + ++ F +SG+GL + +P+EQD ++W++ V PG+ + + ++ G ++P +A++ A + EE+G+ A SRD GD+ QS PM++ NG+ L + INR RG V+PA+ + +G+ L+F+F E E+ P +R+ +L + +I
Sbjct: 5 CSCFDAITGGKHSGESSQE----------MTTRNSARGV-----PPASHGLSRAMSAPTISIQ-----GFKVSGSGLALTRIPVEQDAAYWEIHVSIPGQTAPSGDEDGDLQDVDVNDDGEEDP--YAVKFGVATRKDREFYRSLETVEEEGDQAS--SRDDGTFLMRPISNLRHGDVIGVALQQSDLPMIQILLNGEPLLECIINRFRGTVYPAVYMPAGAGGEGERVDDEGMSLNFVFDEDEFKEMSPHARFGPLLVAQGII 244
BLAST of EWM28118.1 vs. NCBI_GenBank
Match: gi|873241784|emb|CEL92292.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 69.3218 bits (168), Expect = 1.327e-10 Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 0
Query: 56 INMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALEGMKEPLEWALRVNSAEAQSE--REEDGESAMVVSRDGDIFSCVFDQSSCPM-LRFFQNGKELEKQAINRVRGLVFPALELF-GDGVELSF 204
I RGSQ+ L +GR + G+G+ ++++P+ QD +W+V+VL+ GR +GVSR LE + + + R + + V+ D D+ SC FDQS P L F NGK L+ I+ V+G V PA+ + G VE++F
Sbjct: 72 IGARGSQI----LLDGR-VARGSGVVLSNVPIIQDKVYWEVRVLKVGRILVGVSRELVGDYLENLAADGDGRGAGGFGDGVMSWARAFGVQGGIPVAPD-DVISCTFDQSDIPTRLAFRLNGKALDSATISGVKGEVRPAVGIAEGACVEVNF 218 The following BLAST results are available for this feature:
BLAST of EWM28118.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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