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Properties
| Property Name | Value |
|---|
| Product | Dimeric alpha-beta barrel |
| Orig transcript id | gnl|cribi|Naga_100036g31.2546.mrna |
| Orig protein id | gnl|cribi|Naga_100036g31.2546 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:654389..656030 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2554 ID=rna2554|Name=rna2554|organism=Nannochloropsis gaditana|type=mRNA|length=7252bp
CCATGCACAGGCTCACTGTCCGTAAGTCCGGGTGTTGATGGTACATGTCA
GTGTAAGGAACCACAGACGAATTTAATTCCCCTCCTATTTCAGTCCAAAT
TGCAAGGGGAGTTCATCGATGTTTTCCTGGGCATCCATTCAAGCGGTTGA
GCCTGTGGAAGACACCGTCGATGGCCAGCATCCCCACACAGGGCAGGACC
ATGCGGAGGGCCGAGCAGGCCTCGTCGGGCCGGATATGGGAGAGACGCGG
GAGGCACAAGAGACTCGCTTGGTGGAGGCATACAGCAAGGCAGTTGAAGC
GCATGTCGAAGGCCAGTACGTGCCGGCAAAGCGTGCGTATCAACTGCTTC
TCGATGAGCCTCGAGTTAGGGATGCTGACGTTTCTGACGAGATGCTCTTT
CGCGTCCGCTATCTGGGGACCAAAAATTTTGCCGAGCTCCTTGAAAAGGA
AGGTAAAATAAGCGAGGCCCTCGATGCATTCTCGCGCGCCACAGATTTAG
ATGATGGGGACGCAGTAGTGTGGCTGCATCTAGCGACGTTATGTGAGCAG
CAGGGATTCTGGAGGGCAGCGAGGTATGCGTATGAACGTGGGCCTGGACC
CGGGCCGACAGCGTCATGGGACTGCCTCGAGGGCTTGGCTCGTGTATTGG
AGGTGCTCGGGGATTGGTCGGCATGTCAGTCGGTCTTGCAGCGAGCATTG
CGCTTGGACAGCAACCATCCTGGGCTCTTGGAGCTTTGGTTTCGTGTGCG
ACGGGCGTGGCGTCGAGGTAGCCTTCCAGCGGCAATCAGTCGTGGAGGAA
GTAGGGGCTTGAGCAATGAAGATCAATCCTTTGACGAGAGAGAGGCCGAC
GGCGTCCGACCGTGTGCTTTTCACGCAAAGGAAGGGGTCTCTGAGGCGTC
AGCCCCCACCATCCTGCCCGTCACCCTGGAAGCCGATGGCGAGTCACACG
CCTGGTTGGACCTGGGCCGAGCACTTCTCCAGGTGCAGGAATCATGTTGT
CCCCGCCCGTTGAAGGTGGAGGCTGAGGTTGTGTTTCGTAGTCCCTCCTC
GGCGCCCAACGGCCATGCTGATGACGCTGGGAAGCCTCTAGGGCAGGGGC
GGCGGACGGCACGAGTGACAGAGGCAGAGCGCATGCAACAGGTATCCGCT
GGAAAAGAGGGGGCTGACTCGTGCTTCCATCAACCTGAATGCTCGGAGTC
GGGGCAACAAACGGTGAGGGGGGAGTCTGGGGGCGGACTTGGTAACGGGG
CGGGGGCGTCCCAGGAGAGGGGAAAATCAAGCGGACCACCTCCGTCTTCC
GTGGAAAACGACAAGGGCGACGCGCCAACGCCTCATATAAGTGTATCCAA
AGCTCGGCGGGCCTCAAGACGCGGTGGACGCACGTCCAAGGACGAAGAGG
GGGCGGGAAAGGGGGAGGAAAGGTCATCGGAACGGGTGCGCGAGTGGATG
GAAGCGAACATTTTTCATGGGACGATGCGAAACCGCGACCAGGGCGAGAG
CAATCCCCTAAGTGACCAGACAGGTCATGCTTTGGACTGGTGGTCCGACT
GGGGCGTGGCGGCATCCTGGACGCCGGCGCCGGTGGGAGAAGAAGGTCCC
AGGAGCCCGTCCCCCGCTGGACAGGGCGGCATGTTCCACGCTGTCGCAAG
CGACGAAGGGGCAGAGCTCGTGATGCACCGGCTCCGTCCATTCAAGGGCA
CGCATAACAGTCTCTGTGACGTCTGTTTGGACGGGGGCGAGCTCATCTGC
TGCGAGACGTGCTCTTTAGTGTATCACACGTGCTGTCTCCATTCGCCGCC
AGGAATGTCTGAGGCCCTTTACTGCGATAGGTGTCGAGAGGAGGCTTATC
GCTTGGACGACAGGCAGCCCCCACGCGTCGCCGACCACGCGCTGCTCGTT
GATGAGATTGAAGAGATCACTGGCAATTTTTTGCCCTCTGTGCACGGAAA
TCTAGGTGCTCTCGACGTCATGCGCCGCTTGGTCATGCGCCTGGCACGTG
TCCGCGAGCCCCGCGTTTGGAGTGACGGGAGATTGCGTGGGGTGGCGCTG
GCCTTAGAGGAGGCCTGCAGGTCCTTTGCACGGGATATTAAGGGGCATGT
ACATCACGATTCGGAACCGCGCGTCCTAGACTTCGGCCCTGCAGTAGAGC
TCTTTTTGGCGGAGCTGCATATGGATGAGCTGCTCATTGTTGGGTCGGCC
AGGAAGGAAGCGATGGTACTATCAGGCGAGGCGTTGGAAAAATATAAGAA
AATGGACACCAAAACTGCGGATAGCAATGATGTTTCGAGCGAAATGATTC
GGGAAAGACGGTTTGAAAGGTCTCGTCGCTGGCCATCGCCGGGGCCTGAC
AGCTGTTATCATGAAGCTGCGTGTGACCTTTTCATAGCCAAGACAATAGA
AGCCCTAGGTATCCAGACAAAAAGCAAAGGTGAAAAGGAAAACAATGTAG
TAAGCGGGCGTTGGGAACCGCTGGAGGTGGAGGGAGAGGAAGAAACGGAG
AGGGAGGAAAAAGACGAGGAGGTGATTTTTAGCGAGATTTACAGGTGCCG
CTTTGCTTGGCTCCGGGCATTGCTGGCGGCATGGCGAGGCGATGCTCAGG
ATGCTGAGCGCTTTTTGACCGAGTGTCAGGGGCACCTAGAGGAAGTAGCA
AAGCCTGATGGCAGTATCAGTCTATCGCATTGCCAGCGGAACCCGCGTAT
CTCCCTTGAGGCACTGGGGACAAAGCGAAAGGAGCTGTTACAGCGGAACG
AAAGTGGGGCAACGCGAGAGCTTGCTACTGCTTTCCGGAAAGGGGTGCTC
CGCAATGCGGGCAATGGCTCGCTGGAGGCGACCAGAGCTTTCCTGTCTCT
CGTCCGTCGTCGTTACTTATGCGTGCACAGCGAGGATGGGAAATCGGGTT
CAGACGGCGCGGCATCTGGGTTGCAACAGCAGCACGTCATTGACGAGCTG
CTCGCAGACTTCCTTGAGTACGAAGCCAAAGGTCTGATGGATACCCTGAA
GAGGGTTGGGGGCCGCACATTTGCTGCTGTCGGCACATTTTGTGGGGCAA
TGGACCGCTTGGACGCTGCCTTGGAGAAACACTCTTCCATTCTCATGATC
ACGCTCATCACATGCGCCAAGGCAGACGACCTGCTCACGGCAGTACGCAT
TTTGCACCAGATTCTTTGGCATCTGCTTTTCGTGGATCATTGGGGAGATA
AAGTGGTGGCCAGCTATCATCAAAGCTTGCCCGCTGCACTAGCGGCGCAG
GCTCGTTCTGATCTGACACGTCTTAACGTATTGCTCCTGGAAACGCTGAG
CCATCTTCTCGCCATGGCTTTGCGGGGAGGATGCCCCCCTTTCCTTGTCC
TATCAGGAGATCTGTGTGATGCTTTGCCCTCGACTTTAGCATCTTTGCTT
CGATTCTCGTCGCTGCCTTACTCGCGAGTAATAATGAACGCAGCCATGGA
CATTTTTAAGGCGGTCACAAGAAGAGACGGTTGCAAGACTTCTACATCGT
TGGCTTTAGAAAGTACGATAAGGCCTACTTACAGTAGCCTGGTCGAACGA
CTTGAAGAGACAATGTTTCGCAGTTTGTCAGGAATTCTTTGCGATCCTCA
GCTAGAGCCGGGCTTCCTTCAGGATTATACCAATTCGACCAATGCTCGCG
ATTACTTATTTCTGTCGCTGCACCACTTTAGTAATTTGATGGATGAGAAT
TCTACCTGGGCAGTCCATCCAGAGCAAGGTATTAAACAGTTAACACGGCA
GCAGTTGTGGGCGTTGACTTGTTCACTTCAAAATCTGGCACGGATGGCCT
CAGAGAAAGATTCTCTCTACGGAAAAACTCTTTTTCCATGCTACCTGGCC
CAAACGTTTCTCGTCCTAGAGCATCCTTTACTACAAGGAAACGATCCCAC
ATCCATACAGTCTATACGTCTGGACTGGATGATATTGATGCACGGAGTGC
TTGCGGAGATAGGACAATGCGGTGAAGAAGGTGGCCGCTTCCTTAAACTT
GTCTTAAAGGTGACAGGGCTGTGCACTCGTACTCCTACTGCGGATGGCGA
TGAGTCTCTATGGAGCGAGGAATCAAACGTGTTTAAGGCGAGCGTCCAAT
GCATGCGGTGCTTGTACGGTCTCGACCTTTCGCCGAACGGCACAGTTGAA
GGGCATCATACAAAGAGCCGGGAACCCGAGGGATTGTCCGAAACTATGGG
CTTGGCTACCTTTGTCGTTCGATATTTGGAGGAGGCCCAGGTGACGGTAC
AACGGAGGAAACAGATGTTGACTGCATTGCTACTGGCCTTTGATAAGGAG
CCGATGCTGCAGCAGCCTGAAGTGTGTTCAGGTCTTTTCCCATTAATTGA
ATCTTTTCTTTTCCGGGGGACAGTGGAGTTGGAAACGTCATACTTATCTG
GTGATCCAACAAGTACAGCGAACACAAGCTCAGTGCGGGGCATTGGGGAT
TCAGCCGCGTTGGTGGCATTGCTGAATGAAAGCGAGCGACTTACGGTTAC
GGCGATGGAGGAGACGGAGGCGGTCACTCCTGAGCAATCATCAAAATGTT
CCGAAATGAGTATGCTTCACCTAGAGAAGGTGAAAGAGAATGGTGTGGTG
GACTCAGACGCGCTGATATACGTATATTCTCACTTTTATACCTATCTTAC
CGAGCTTAGTAATACACCACGATTCTTAAAACGTAAAGGACAGTCTGAAG
CAGAAGCGTACGCCGAGTACGAAGCTGCGAATCTAGACCTGCTTCAGATG
CATTTTCTAGACCTGAGATTCAACCCCAATCGACTGGAGGCGTGGCTCGG
ATTGACGGAACGGGCTTGGAGCCTTTACCTCATGTACTTAGACCATTGCC
CCGCTGGTGTCAATGAGGATGTCCGAGAAAGAGGTGATAATGACTACGAT
GCCCGCAATGTTGTATCATGTTTCGAGCAGGCTTTATACCAGACTAGAGA
GTGCGTGGACGAAGAGCCCAGCCAAGACGCGGGGAAGGATTCCTCACTCG
TGTCCATAGCTCCTTTTCTGGATATCGCATTCTTCGAAGACGTGTCCGGT
ACAGAGCAAGGGGCCCGCGTTTGCTACGCCCTGGATGTGATGGGGCTCAA
GCATTTGCTGAAACCGAAGAACTGCGAACTCGGTGAGGAGGAATTGGACG
TGTATTGGGCAGCTTTGGTGGTCGCTGTTTACCGCTTGCTGGCTTCGCGG
TGCCTCGAAACGCTGGACGGCATACTCAAGCACCGCCTTGAGAAGGACCC
GTCGGACCAAGAGCTGGCAACAAAGCGAATCGAGGCTCGTGTTCGCCTAG
CGATGATTTCCTACATGCGACGATACCACAAATCTGCAATGGGTCCCCAT
GACTTCTCGCTGAAGCGAAAAGATCCGGAACACATGGCTGTAATTGCGAC
GGCATTGAGGGATTTCCAGGCAGCGCAATCGATGGAGAGTCGCTACGGCG
TGCGTTCTCTTCGATGGGACATCCCTTTCATGATTGGAAGGCTTCTTGAG
GAGACAGGGCGGGCCAGGCACGGAAGACTCACATCTTACGCCAAGATAGA
GCTTTTAGAGCCCGGATGGATGGAGTCCTTTTTGTCGCAGTTCAAAAGGG
CTCAAGAGCTTGCCGAGAGGAGCGGGAACAAAATGTCGAGGAAGGAGGCT
TTCTACCGCCTCCATGCCACGCGCCTTAAGGCCATACTTTCGGACATTCA
ACAGGTAGCAGGAGTTTCAAGCTTGTTGCCTCCTTGTGCACACATGCTCC
AGCTTTTGCGGCGCTATAGCGTGCGTGATGGTGAAGGGAAAGCCGAGGCT
ACCGATATTCCGCAGAAGGATTGTTCCGCAGAGCAGCTGTCGAGGATTCG
CTGGGCGCTTCTGATGGATGCCATGAAAGCGATGGCTCTCTGTCGCCGTT
TTGACAGTTTTGACCACCGGTCTATTTATCAGCGGGCGCGAGTCAGCGAG
CATCTTTTCGTCTTTTGGCCCGAAGAAGGAGGGACAGACATAGAGGGACC
AATTCGTGACGGGATAGATGGCAAGCAAGACCTATCTATACCCATGAAAA
AGGCCCTCGCTTCATCAACGCAAGGGAAGAAGGCAAGGTTTTCGTTGGTG
GCGGCATCAGATCTGATGTACCGGCTTTTTGAGAAGAAACGGACGCAGAT
TGTGGCCGTGTGGCTGGCGGAGGAATGTAATAACGTGTACGATCTCTTGA
ATCAGCGCAATCTCAAATATGAGGCAACTCGCCGCCGGTATATAACATAT
TACGTCGACCTTCTCGAGCGCACCAACGACTGTGATCGGCTTTTTGAGCT
TTACCGCAACGTGCGTACGCTGAAAGATCCCACTAACGACCTTCTCTCCT
GGACGCAGAGCCGTATATTGGAGTGCTTGACAATGGTCCTTGACAGCGGG
CTACCCTGTGCCAGGGAAGACAAAGGGGCCTGTGAGGGGGCATCAGAGAC
CAAGCTCACTGAGGAGACGAACATGCGGTGCTTTGAGATAACGTACGAAG
TTTATCTTGATTTGGCTGAGGCTGTTGCTTCCACGAGCGGCCGGCGAGGT
ACCTGGCAAAGAGAGACCGACCGTCTTGCCGAGCAGCGCAAGTCCCTGTT
TCTCAAGCTTGAAAACGTGCTTGTCAGGCATCATGACAAGTCTATAGGGG
CAGCAGGAGCTGAAGACATGATGGAGGAGTCGCCGCAGATAGCCAAATCG
AAAACAAGGCCCACTGGTGGGGCTCTCAGCCTCGCAACGACATTAGCATT
CTGCCATGAAAAGTGGCCTGAGAAGCAAGGAAGATTGAAGCTGGCAAAGA
CCTCTCAAGCGGATGTCGTTGTGAAGGTGATCAGGAAGGCAAAATCTCAT
CGAGATACGGAGCTCCCTGTAGAAGGACTGGCTGCTCCGCAGCAACGAAA
GGATCAAATTGAGCTGTCACAAGAGGCAAAGATTGATTGTATGGCGGAGG
GACCGGGAGACGAAAAGGTAGAGGGTGGTAGCTTCAAACGACGGCGCATT
TTTGACGCTTGTGAGGACGCTGAAGTAGAGCAAGATCAATATGTCACAGC
GCTTAGAAGAGACACGGTGATAGAATTTTTGCTCGACGAGGCCGATGAAA
TCTAAACCAGCCAAAGTACAATAACACAATATGTATGTATGCGTTCGAAA
AAAGATCATGGATTTAACGGCAAAAGATTACGATGTACAAGGCACAAGAG
GTGAGGCGCCAGTTTGAAATGCAATCGTATGGACGCAAATTCTTCTGTTC
TG back to topprotein sequence of rna2554 >rna2554-protein ID=rna2554-protein|Name=rna2554|organism=Nannochloropsis gaditana|type=polypeptide|length=148bp
MERTLRKMFKTCGSPLPAFWCGVLLGLAMSFVVIKSSPKRKAIPGAFWLT
VQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLF
ERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEATISGESYIESNMGFMS back to topmRNA from alignment at CM002459.1:654389..656030+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2554 ID=rna2554|Name=rna2554|organism=Nannochloropsis gaditana|type=mRNA|length=1642bp|location=Sequence derived from alignment at CM002459.1:654389..656030+ (Nannochloropsis gaditana)
CAGGGCATCGGCTGTAATGCTGGAATGCCACTACCAGCAAATGCTTTTTA
CGGATGAGAATTTGGGAATGTTCCATCGCCTTCATTCGCGTCTGTAATAC
AAAACCATCGCTACAGGACGCACGAGATGTAAAACCGCCTGGGTTTAATT
ATCGAGTGTCGAGTGCGGATCCCTGCAAGGATGCCGCTGTTCTTCTAGCT
CCCGTACATTGCGCACTTTATCGAAGTAGAACGCTGCTGATCCCATACCG
GATGCATGACGAGGACTTGATTTTACGGAAGGTGTGACATCGGTTGCAAC
GTTCATGCATTCCTCATCTTTCATACCGCTGCGACAGGATTAGAATAAAA
TGGAGAGGACTTTGCGTAAGATGTTCAAGACATGCGGATCGCCGCTGCCT
GCGTTTTGGTGTGGTGTCCTCTTGGGGTTGGCAATGTCATTTGTCGTGAT
CAAATCAAGCCCTAAGCGCAAGGCTATTCCAGGTTCGTACCCAAGTCTCA
TTGGATGTCTATGGTCCAATTATTAAGCGAAGGACGTGTTTTACCCCCTC
GTGAAGGTGCTTTTTGGCTGACCGTGCAAGTAACCTTTAAACGCGCTGAA
GACGTTGATATTTTTAAAACCGCTTTTGCGCCGCTTGCCGCATTCGTCGA
AAAGAATGAACCGAGGACTTTGTCCTACAGCATGGCGCAATCAGACAAGG
ACCCCAAGACTGTGCTGCTCTTCGAGAGATACGTGGACAAGAATGACGCT
TATCTGGAAGTCCATCGCAAAAGCGCCCCATTCAAGGTATTTCGGCCCCA
GCTCGCTGCTATGGAGGCCACGATTTCGGGGGAATCATACATCGAAAGTA
ATATGGGCTTTATGTCCTGATATATCCAGGAGGTAGTACACGTATAACAC
AGAACAAGAACGAAACAGAAAAAAGGCGTCTCCCTGAGAATCTTCTTTAC
TCAAGTATGTGAGTCTTCTTAATGTCCGTGAAGCTTGCTTCTTGCGAGAG
TAGAGTGATACCTCATTTCATGAAATTGAGAGAGTGTTGTTTCACGGGCA
ACACGAGTCTTTGCTTGCTTAGAAAGTGCTCTGCAGAGCATGGAATAAAG
CTATCAttctcgtctttctccgCACATCATTGTATTACGTCTGACAGACC
AGATGTTAAAAACATGactgccttcctctccagcTGGCACTACTTCCCAT
AGTCACTTATGTACGCTTGGTCTTGCTGCGGGTAGTCGGACCACCGCTCA
CTACCTGCCCCTTGTTGTATGTCAAAAGAGCAAAggtgtggagggcgagc
atTGGCACATGGATCACTGCCGGGTTAAAGCTGAAGGCGCTGCCCTTGTT
GCTTCCCCATTTATTATAAACCATGTCGCTTAAAACCAAGGCATGGAAAG
CTAGAAAGACGCCATTCAGAATAGCTTTGTCTTTAGTGCTGTATTTGAGC
GCCGCACCACCTGCGATAAGCCCGACGGCTAAGGATTGAAAGGCAAGGCA
ACGCAAGATTGTCCAAGCGCTGCTTCCGTGCCATTTTGTCTCTAAACCCA
ACAGGCCCGGAACAATTTGTTGAGGACGGAAAAAAAGCATGGCAACTTCC
CAAATGTGAATGCCAGCATGAAGAAGTAAGGCAACACTAAGC back to topCoding sequence (CDS) from alignment at CM002459.1:654389..656030+ >rna2554 ID=rna2554|Name=rna2554|organism=Nannochloropsis gaditana|type=CDS|length=894bp|location=Sequence derived from alignment at CM002459.1:654389..656030+ (Nannochloropsis gaditana)
ATGGAGAGGACTTTGCGTAAGATGTTCAAGACATGCGGATCGCCGCTGCC
TGCGTTTTGGTGTGGTGTCCTCTTGGGGTTGGCAATGTCATTTGTCGTGA
TCAAATCAAGCCCTAAGCGCAAGGCTATTCCAGGTGCTTTTTGGCTGACC
GTGCAAGTAACCTTTAAACGCGCTGAAGACGTTGATATTTTTAAAACCGC
TTTTGCGCCGCTTGCCGCATTCGTCGAAAAGAATGAACCGAGGACTTTGT
CCTACAGCATGGCGCAATCAGACAAGGACCCCAAGACTGTGCTGCTCTTC
GAGAGATACGTGGACAAGAATGACGCTTATCTGGAAGTCCATCGCAAAAG
CGCCCCATTCAAGGTATTTCGGCCCCAGCTCGCTGCTATGGAGGCCACGA
TTTCGGGGGAATCATACATCGAAAGTAATATGGGCTTTATGTCCTGAATG
GAGAGGACTTTGCGTAAGATGTTCAAGACATGCGGATCGCCGCTGCCTGC
GTTTTGGTGTGGTGTCCTCTTGGGGTTGGCAATGTCATTTGTCGTGATCA
AATCAAGCCCTAAGCGCAAGGCTATTCCAGGTGCTTTTTGGCTGACCGTG
CAAGTAACCTTTAAACGCGCTGAAGACGTTGATATTTTTAAAACCGCTTT
TGCGCCGCTTGCCGCATTCGTCGAAAAGAATGAACCGAGGACTTTGTCCT
ACAGCATGGCGCAATCAGACAAGGACCCCAAGACTGTGCTGCTCTTCGAG
AGATACGTGGACAAGAATGACGCTTATCTGGAAGTCCATCGCAAAAGCGC
CCCATTCAAGGTATTTCGGCCCCAGCTCGCTGCTATGGAGGCCACGATTT
CGGGGGAATCATACATCGAAAGTAATATGGGCTTTATGTCCTGA back to top
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