EWM28126.1, cds2546 (CDS) Nannochloropsis gaditana

Overview
NameEWM28126.1
Unique Namecds2546
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:654738..654870 +
Alignment locationCM002459.1:654945..655258 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28126.1
ProductDimeric alpha-beta barrel
Orig transcript idgnl|cribi|Naga_100036g31.2546.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:654738..654870 +
CM002459.1supercontigCM002459.1:654945..655258 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR011008Dimeric_a/b-barrel
IPR007138ABM_dom
Homology
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|585110470|gb|EWM28126.1| (Dimeric alpha-beta barrel [Nannochloropsis gaditana])

HSP 1 Score: 306.605 bits (784), Expect = 1.110e-105
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
Query:    1 MERTLRKMFKTCGSPLPAFWCGVLLGLAMSFVVIKSSPKRKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEATISGESYIESNMGFMS 148
            MERTLRKMFKTCGSPLPAFWCGVLLGLAMSFVVIKSSPKRKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEATISGESYIESNMGFMS
Sbjct:    1 MERTLRKMFKTCGSPLPAFWCGVLLGLAMSFVVIKSSPKRKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEATISGESYIESNMGFMS 148          
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|1072235076|gb|OEU19805.1| (hypothetical protein FRACYDRAFT_216959 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 93.2041 bits (230), Expect = 1.254e-21
Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 0
Query:   47 FWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAME----ATISGESYIESNMGF 146
            F L V ++F   E    F   F PLA +V+  E  TL+Y +  SD DP  V++ ERY DK +AYL++H+ S PF  FRP+L AM+     TISG SYI+S +GF
Sbjct:   11 FSLLVTISFDSIEYKQQFLKDFKPLADYVKTMETDTLAYEVLLSDNDPLKVMILERYRDKENAYLKIHKSSVPFLAFRPKLQAMQEKGHVTISGNSYIDSGIGF 114          
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|219129213|ref|XP_002184789.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403898|gb|EEC43848.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 89.3521 bits (220), Expect = 2.562e-20
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 0
Query:   46 AFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAME----ATISGESYIESNMGF 146
            AF L V + F  ++  + F    A +A  V  +EP TLSY +  SDKD  TV++ ERY DK  A+L VHR S PF+ FRP+L AM+     TISGES+++S +GF
Sbjct:    5 AFSLFVTLKFSDSQFKEDFLRDIALVATHVRNSEPDTLSYEVLLSDKDDLTVVVMERYRDKEHAFLRVHRNSQPFQEFRPKLKAMQDDGKVTISGESFLDSGIGF 109          
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|545360245|ref|XP_005645517.1| (hypothetical protein COCSUDRAFT_83532 [Coccomyxa subellipsoidea C-169] >gi|384247486|gb|EIE20973.1| hypothetical protein COCSUDRAFT_83532 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 86.6557 bits (213), Expect = 6.198e-19
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 0
Query:   46 AFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEATI-----SGESYIESNMGFM 147
            AF L +   +K   D D+F + F PLA +V  +EP TL+Y ++ SDK+P  +++FERY  +  A  EVH++SAPFK F+   A  EA +     +GESYIE ++G+M
Sbjct:   43 AFLLVITHKYKTIRDRDLFISLFEPLAKYVVHHEPETLAYELSVSDKNPLEIIIFERYTSQ-AALTEVHQQSAPFKKFKKAWA--EANLEYENKTGESYIEKDLGYM 146          
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|926778508|ref|XP_013897728.1| (hypothetical protein MNEG_9254 [Monoraphidium neglectum] >gi|761967172|gb|KIY98708.1| hypothetical protein MNEG_9254 [Monoraphidium neglectum])

HSP 1 Score: 82.0333 bits (201), Expect = 1.519e-17
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 0
Query:   39 KRKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEATISGESYIESNMGFM 147
            +R  +   F L V +TFK  E  D +  A+ P+   V  NEP TLSY +   D +P   L++ERYVD+  AY +VHR S     F+   + ++  + G+SY+E+N GFM
Sbjct:    3 QRTYVIQVFVLAVSLTFKDLEQRDKWVAAWLPMVDQVRANEPGTLSYELCIGDTEPLKALVYERYVDRA-AYEDVHRTSEAMAAFKEVTSKIKMQVQGQSYVETNHGFM 110          
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|760446969|ref|XP_011400553.1| (Autophagy-related protein 9 [Auxenochlorella protothecoides] >gi|675355130|gb|KFM27570.1| Autophagy-related protein 9 [Auxenochlorella protothecoides])

HSP 1 Score: 85.5001 bits (210), Expect = 1.320e-16
Identity = 50/119 (42.02%), Postives = 65/119 (54.62%), Query Frame = 0
Query:   34 IKSSPKRKAIP---GAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFR--PQLAAMEATISGESYIESNMGFM 147
            + S P   A+P     F L +QV F+   D DIF   F PLA +V ++EPRTLSY +A +D DP  VL+ ERY  K D   EVH  S PF  F+   Q        +G+SY E  +G+M
Sbjct:  573 LTSKPPSSALPIPVQVFVLAIQVKFESEADRDIFIDLFRPLAKYVAEHEPRTLSYDLAIADTDPTLVLIHERYATKKD-LTEVHHVSEPFLAFKKATQELPFPFVKTGQSYYEQGIGYM 690          
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|633904529|gb|KDD72483.1| (hypothetical protein H632_c3289p1 [Helicosporidium sp. ATCC 50920])

HSP 1 Score: 79.7221 bits (195), Expect = 1.379e-16
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 0
Query:   40 RKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEATIS--GESYIESNMGFM 147
            R++  G F L+V+V      ++D F   F PLA +V+++EP T+ Y MA +D+ P  VL+ ERY  +  A+ EVHR SAPF  F+ ++AA+  T++  G SY E   GF+
Sbjct:    2 RRSAKGTFVLSVRVKLASQAELDAFVEVFRPLAEYVQRHEPDTVFYEMALADQKPFEVLIHERYSSRA-AFEEVHRVSAPFLEFKRRVAALPFTVAFDGVSYEELGYGFV 110          
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|224002462|ref|XP_002290903.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974325|gb|EED92655.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 80.1073 bits (196), Expect = 5.481e-16
Identity = 48/135 (35.56%), Postives = 66/135 (48.89%), Query Frame = 0
Query:   35 KSSPKRKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNE------------------PRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAM----EATISGESYIESNMGFM 147
            KSS  +    GAF L V + F   +  + F     P+  +V  NE                    TLSY +A SDK+P  VL+ ERY DK + YL VH+    F  FR QL  M    E  I+GESY+E+++G++
Sbjct:   53 KSSLSKYEADGAFVLLVNMKFATIDHRNTFLKLMEPVCNYVYSNEGPAISSTSTSSSSSGKLEQTTLSYQVAISDKNPLQVLVMERYSDKENGYLTVHKSGKEFLKFREQLKGMQDRGEVVINGESYLETSLGYV 187          
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|551679198|ref|XP_005842351.1| (hypothetical protein GUITHDRAFT_62719 [Guillardia theta CCMP2712] >gi|428186521|gb|EKX55371.1| hypothetical protein GUITHDRAFT_62719 [Guillardia theta CCMP2712])

HSP 1 Score: 71.633 bits (174), Expect = 3.114e-13
Identity = 41/114 (35.96%), Postives = 67/114 (58.77%), Query Frame = 0
Query:   37 SPKRKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEAT----ISGESYIESNMGF 146
            + + K    +F L V VTF   +  + FK  +A  A F  K+E  TLSY +A SD+D    ++ ER+  K+D YL  H++S+ FK +R +L  +E +    ++G+SY +SN+G+
Sbjct:   12 ADREKPTIASFILIVHVTFSSKKVKEDFKVLYAEEAEFCRKSEANTLSYELALSDRDELAGVIIERFRSKDD-YLS-HKESSVFKRYREKLKKLEESGDVKLNGQSYYQSNLGY 123          
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|551552635|ref|XP_005763678.1| (hypothetical protein EMIHUDRAFT_248022 [Emiliania huxleyi CCMP1516] >gi|485613131|gb|EOD11249.1| hypothetical protein EMIHUDRAFT_248022 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 70.8626 bits (172), Expect = 4.509e-13
Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 0
Query:   49 LTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAA-------MEATISGESYIESNMGFM 147
            L++++TF  A + D F   F PLA +V  NEP TL+Y +  SDKD     +FERY  K D  L  H++S PFK F+  LA           ++ G S+ E+ +G M
Sbjct:    5 LSIKMTFGSAAERDRFGELFRPLAEWVTANEPNTLAYDLLLSDKDECVACVFERYATKAD--LATHQQSEPFKAFKAGLAEAEAAGTIHRVSVDGHSFNEAQVGHM 108          
The following BLAST results are available for this feature:
BLAST of EWM28126.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110470|gb|EWM28126.1|1.110e-105100.00Dimeric alpha-beta barrel [Nannochloropsis gaditan... [more]
gi|1072235076|gb|OEU19805.1|1.254e-2146.15hypothetical protein FRACYDRAFT_216959 [Fragilario... [more]
gi|219129213|ref|XP_002184789.1|2.562e-2046.67predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|545360245|ref|XP_005645517.1|6.198e-1942.99hypothetical protein COCSUDRAFT_83532 [Coccomyxa s... [more]
gi|926778508|ref|XP_013897728.1|1.519e-1738.53hypothetical protein MNEG_9254 [Monoraphidium negl... [more]
gi|760446969|ref|XP_011400553.1|1.320e-1642.02Autophagy-related protein 9 [Auxenochlorella proto... [more]
gi|633904529|gb|KDD72483.1|1.379e-1640.91hypothetical protein H632_c3289p1 [Helicosporidium... [more]
gi|224002462|ref|XP_002290903.1|5.481e-1635.56predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|551679198|ref|XP_005842351.1|3.114e-1335.96hypothetical protein GUITHDRAFT_62719 [Guillardia ... [more]
gi|551552635|ref|XP_005763678.1|4.509e-1338.68hypothetical protein EMIHUDRAFT_248022 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2554rna2554Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications