EWM28126.1, cds2546 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|585110470|gb|EWM28126.1| (Dimeric alpha-beta barrel [Nannochloropsis gaditana]) HSP 1 Score: 306.605 bits (784), Expect = 1.110e-105 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
Query: 1 MERTLRKMFKTCGSPLPAFWCGVLLGLAMSFVVIKSSPKRKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEATISGESYIESNMGFMS 148
MERTLRKMFKTCGSPLPAFWCGVLLGLAMSFVVIKSSPKRKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEATISGESYIESNMGFMS
Sbjct: 1 MERTLRKMFKTCGSPLPAFWCGVLLGLAMSFVVIKSSPKRKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEATISGESYIESNMGFMS 148
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|1072235076|gb|OEU19805.1| (hypothetical protein FRACYDRAFT_216959 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 93.2041 bits (230), Expect = 1.254e-21 Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 0
Query: 47 FWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAME----ATISGESYIESNMGF 146
F L V ++F E F F PLA +V+ E TL+Y + SD DP V++ ERY DK +AYL++H+ S PF FRP+L AM+ TISG SYI+S +GF
Sbjct: 11 FSLLVTISFDSIEYKQQFLKDFKPLADYVKTMETDTLAYEVLLSDNDPLKVMILERYRDKENAYLKIHKSSVPFLAFRPKLQAMQEKGHVTISGNSYIDSGIGF 114
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|219129213|ref|XP_002184789.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403898|gb|EEC43848.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 89.3521 bits (220), Expect = 2.562e-20 Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 0
Query: 46 AFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAME----ATISGESYIESNMGF 146
AF L V + F ++ + F A +A V +EP TLSY + SDKD TV++ ERY DK A+L VHR S PF+ FRP+L AM+ TISGES+++S +GF
Sbjct: 5 AFSLFVTLKFSDSQFKEDFLRDIALVATHVRNSEPDTLSYEVLLSDKDDLTVVVMERYRDKEHAFLRVHRNSQPFQEFRPKLKAMQDDGKVTISGESFLDSGIGF 109
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|545360245|ref|XP_005645517.1| (hypothetical protein COCSUDRAFT_83532 [Coccomyxa subellipsoidea C-169] >gi|384247486|gb|EIE20973.1| hypothetical protein COCSUDRAFT_83532 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 86.6557 bits (213), Expect = 6.198e-19 Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 0
Query: 46 AFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEATI-----SGESYIESNMGFM 147
AF L + +K D D+F + F PLA +V +EP TL+Y ++ SDK+P +++FERY + A EVH++SAPFK F+ A EA + +GESYIE ++G+M
Sbjct: 43 AFLLVITHKYKTIRDRDLFISLFEPLAKYVVHHEPETLAYELSVSDKNPLEIIIFERYTSQ-AALTEVHQQSAPFKKFKKAWA--EANLEYENKTGESYIEKDLGYM 146
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|926778508|ref|XP_013897728.1| (hypothetical protein MNEG_9254 [Monoraphidium neglectum] >gi|761967172|gb|KIY98708.1| hypothetical protein MNEG_9254 [Monoraphidium neglectum]) HSP 1 Score: 82.0333 bits (201), Expect = 1.519e-17 Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 0
Query: 39 KRKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEATISGESYIESNMGFM 147
+R + F L V +TFK E D + A+ P+ V NEP TLSY + D +P L++ERYVD+ AY +VHR S F+ + ++ + G+SY+E+N GFM
Sbjct: 3 QRTYVIQVFVLAVSLTFKDLEQRDKWVAAWLPMVDQVRANEPGTLSYELCIGDTEPLKALVYERYVDRA-AYEDVHRTSEAMAAFKEVTSKIKMQVQGQSYVETNHGFM 110
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|760446969|ref|XP_011400553.1| (Autophagy-related protein 9 [Auxenochlorella protothecoides] >gi|675355130|gb|KFM27570.1| Autophagy-related protein 9 [Auxenochlorella protothecoides]) HSP 1 Score: 85.5001 bits (210), Expect = 1.320e-16 Identity = 50/119 (42.02%), Postives = 65/119 (54.62%), Query Frame = 0
Query: 34 IKSSPKRKAIP---GAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFR--PQLAAMEATISGESYIESNMGFM 147
+ S P A+P F L +QV F+ D DIF F PLA +V ++EPRTLSY +A +D DP VL+ ERY K D EVH S PF F+ Q +G+SY E +G+M
Sbjct: 573 LTSKPPSSALPIPVQVFVLAIQVKFESEADRDIFIDLFRPLAKYVAEHEPRTLSYDLAIADTDPTLVLIHERYATKKD-LTEVHHVSEPFLAFKKATQELPFPFVKTGQSYYEQGIGYM 690
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|633904529|gb|KDD72483.1| (hypothetical protein H632_c3289p1 [Helicosporidium sp. ATCC 50920]) HSP 1 Score: 79.7221 bits (195), Expect = 1.379e-16 Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 0
Query: 40 RKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEATIS--GESYIESNMGFM 147
R++ G F L+V+V ++D F F PLA +V+++EP T+ Y MA +D+ P VL+ ERY + A+ EVHR SAPF F+ ++AA+ T++ G SY E GF+
Sbjct: 2 RRSAKGTFVLSVRVKLASQAELDAFVEVFRPLAEYVQRHEPDTVFYEMALADQKPFEVLIHERYSSRA-AFEEVHRVSAPFLEFKRRVAALPFTVAFDGVSYEELGYGFV 110
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|224002462|ref|XP_002290903.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974325|gb|EED92655.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 80.1073 bits (196), Expect = 5.481e-16 Identity = 48/135 (35.56%), Postives = 66/135 (48.89%), Query Frame = 0
Query: 35 KSSPKRKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNE------------------PRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAM----EATISGESYIESNMGFM 147
KSS + GAF L V + F + + F P+ +V NE TLSY +A SDK+P VL+ ERY DK + YL VH+ F FR QL M E I+GESY+E+++G++
Sbjct: 53 KSSLSKYEADGAFVLLVNMKFATIDHRNTFLKLMEPVCNYVYSNEGPAISSTSTSSSSSGKLEQTTLSYQVAISDKNPLQVLVMERYSDKENGYLTVHKSGKEFLKFREQLKGMQDRGEVVINGESYLETSLGYV 187
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|551679198|ref|XP_005842351.1| (hypothetical protein GUITHDRAFT_62719 [Guillardia theta CCMP2712] >gi|428186521|gb|EKX55371.1| hypothetical protein GUITHDRAFT_62719 [Guillardia theta CCMP2712]) HSP 1 Score: 71.633 bits (174), Expect = 3.114e-13 Identity = 41/114 (35.96%), Postives = 67/114 (58.77%), Query Frame = 0
Query: 37 SPKRKAIPGAFWLTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAAMEAT----ISGESYIESNMGF 146
+ + K +F L V VTF + + FK +A A F K+E TLSY +A SD+D ++ ER+ K+D YL H++S+ FK +R +L +E + ++G+SY +SN+G+
Sbjct: 12 ADREKPTIASFILIVHVTFSSKKVKEDFKVLYAEEAEFCRKSEANTLSYELALSDRDELAGVIIERFRSKDD-YLS-HKESSVFKRYREKLKKLEESGDVKLNGQSYYQSNLGY 123
BLAST of EWM28126.1 vs. NCBI_GenBank
Match: gi|551552635|ref|XP_005763678.1| (hypothetical protein EMIHUDRAFT_248022 [Emiliania huxleyi CCMP1516] >gi|485613131|gb|EOD11249.1| hypothetical protein EMIHUDRAFT_248022 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 70.8626 bits (172), Expect = 4.509e-13 Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 0
Query: 49 LTVQVTFKRAEDVDIFKTAFAPLAAFVEKNEPRTLSYSMAQSDKDPKTVLLFERYVDKNDAYLEVHRKSAPFKVFRPQLAA-------MEATISGESYIESNMGFM 147
L++++TF A + D F F PLA +V NEP TL+Y + SDKD +FERY K D L H++S PFK F+ LA ++ G S+ E+ +G M
Sbjct: 5 LSIKMTFGSAAERDRFGELFRPLAEWVTANEPNTLAYDLLLSDKDECVACVFERYATKAD--LATHQQSEPFKAFKAGLAEAEAAGTIHRVSVDGHSFNEAQVGHM 108 The following BLAST results are available for this feature:
BLAST of EWM28126.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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