rna2547, rna2547 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2547
Unique Name	rna2547
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2563
Alignment location	CM002459.1:629842..631430 -

Link to JBrowse

Properties


Property Name	Value
Product	expressed unknown protein
Orig transcript id	gnl\|cribi\|Naga_100036g39.2531.mrna
Orig protein id	gnl\|cribi\|Naga_100036g39.2531
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:629842..631430 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100036g39	gene2434	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28111.1	cds2539	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2547	rna2547-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:629842..631430-
coding sequence from alignment at CM002459.1:629842..631430-

mRNA sequence

>rna2547 ID=rna2547|Name=rna2547|organism=Nannochloropsis gaditana|type=mRNA|length=2563bp
AAAGGGTCAGGAACGGCGTTCTAGAATATGATGGGAAGATAGTCAAAGCT
TGTTGGTGTACAGGGCGGAGCAAGGAGGGTTGCCCGTCGTGAGAGGTACA
GTGCCTTAATCGCTCGAACTTCCACTTGGAGGGGGCGATGGGAAGGGAGA
GCGATGATTGCGATCGTATTCCACCCTGGGAGAGACGTCGTCGAACACCG
CACACCTGGTCGCGAGCCATAATTGTCACTTTCATTACTCTACTATTTAC
AACGGGAAGTGGATGGACTCGGTCGCCGTCGGTCCTATTTTGGGCCGCTG
TGGTTTTTGCGTAAGGACGAGCGGAAACTCCTTCGAAACCCTCCCTCGAG
ATGTGTGCGTGCGGTCACCTCAATGGTGTAAATGTTTGGACCAGCTTGAA
GCCACCTATGCATGCGCTATAGCAGGCACTATTTCGAGCACGTTTCCCTC
GCTTTTTTTGGGTCTGCAGATGGATGACCTCACCGTGTTCGTCCTTTGCC
GCACAGGATGCAAGCCGTACTGTCGACCGCGGAGGAGGCTGGGATGGATG
TGGACGCGCATATGGATGGTCAAGCGGGGGGGGGCGCGAAGGACGACACA
TCCAATTTGACTGGTGCCAACGCTGAGAGCGGAAGCGGTGCCAACGATGA
TATTGACGCGCCTAATTTTGGTACGTGGGCCATCATTTTCCAGTTGGGTT
TTGCTGAGGTCGCCAGCGTCTGCGCACATATTTCGAGTTCTACCCGTTAC
CACTTATCGGTGTCTTCTTGAGGAAAACGTATGACTCTTTTCATTCAAGA
CTTGTTGCTTAAATATATGTTGCTTCAGAAGGCTTTACCCGCCTTCTCTT
CGATAAGTCATGCGTCTAAAGCCCACCTTTTGTTCTGGATATACGTCTAT
ACTGCAGACATCGACACGTATGCTGCCCGGTATGCTGGCTATACTAAGCT
TCGGCGCTTACTTTTCATCGCGCAGCATTGCAAAAGCCGCGAACTCGACG
CGTACCGTCTGGCCCTGGACGCCCTCACACAGCCGCGGTCCCTCAATATT
CAGCTCTACCGGAAAGTGATGGGCCTGGTGGCGGGGCGCCTTGGCCCAGC
CTATTCTCTTGACGCCACGTGGGCGGAGGAAATCGACAAACGGGCGGCCA
TGCAAAAGGAGCGGCTGGAGAGCGACCTGCAAACCTCCCGGACGGGCATG
GCCAAGGAGAGCATCCGCCTGGGCTATCAGGACCTAGGCGAGTTCCACTA
CGCGCGGGGCGACCTCGACAACGCGCTCAAGAACTTCGTCCGGACACGCG
ACTACTGCTCCATCGCGCGGCATAATGTGGAGATGTGCTTGAACGTGATC
AAGGTCTCGGTGGGGCTAGACAGCTTCGCGCACGTCAGCACCTACGTCTC
AAAAGCCGAGCACGCCACGGGTATGAACGACCCGAAGGTGCGACACAAAC
TGAAAGCGGCCGCCGGTCTCGCTCAATTGTCGCAGCATAACTACGATTCC
GCAGCTCGCAAGTTCCTTGACTGTGGACCCTCCGGCCTAACTAGAGGCAC
CCCCCAAGACCCCGGGCCCGCGTCTTTCGCCCACGTCCTGGCCCCCGAAG
ACGTGGCCACGTACGGAGGCCTCTGCGCGCTGGCCTCCCTGGACCGGCCG
GAGTTGAAGCGCTCCCTCCTGGAAAACACGACGTTCAAGGGCCTTCTGGA
CCTCGTGCCCATGGTGCGGGAGCTCATCTACGACTTTTGCAGGTCGCGCT
ACGGAGCTTGCCTCGGCGCCCTGGCCGCTCTTAAGCCCGAGCTCCTGCTG
GATGTCCATCTCCATCGACACGTGGAGTCGCTGTACCAGCGCATCCGAGA
GCGGTGCCTCCTTCAATACTTCATTCCCTACCTGTCCGTGGACCTGGGGT
CCATGGCGAACACCTTCGACACCCCCCTACCCCGTTTGGAGAAGGAGATA
GCAGGGCTCATTGTGACGAATCGAATGCCTGCACGCATCGACAGCCAGCG
GAAAACCCTCCATCGTCGACAAGTGGACCCGCGGGAGGCAGGCTACAAGA
AGGTCTTCAGCATGGGCCAGGAGTTTCTGCGGGAGATGAGGGCGATGCTG
TTCCGCATGAGCTTGCTGGAACACTCCGTGTTTGTAGAAGCAGAGACACG
CGGAGGTGCTGGTGGAGGAGGCGATGCAAGAAGTGGTGGTCGAGCAGGCA
CCTTGGGGAGCCCGCACCCCTCACAGGGACGGGCGGCCCGTGGTCAGGGG
GCGGGCGGGGGGACAAGTCAAGCGCGTGGCGGGGACGCGGTGCTGGAGGG
GGAGAGCTCGCCGGAGGAGGATACCGACATGGGCGAGGACTTCGGCTCGG
CCAACCAACAGGACCCTGACCTCGAGGCTACGCTTACAGGAGAGGGCTGA
TGTTTACTAATGAGTGAATTTTTATCGGCGCGTGAAAAGCATCGATGCAT
GAGGAAAGCGAATGCACAGGTACACAGTCGATGCGATCGTAGCGAGCCTG
CCTGATTCAAAACAATACAAACAAAGCAAGAGCTGCGACGGGAGGCCATT
ACCTCTTGAGTTT

protein sequence of rna2547

>rna2547-protein ID=rna2547-protein|Name=rna2547|organism=Nannochloropsis gaditana|type=polypeptide|length=401bp
MTSRSFPILLVLVTISVSYAFMPQLSTIRPRLTRCESSLQNRRSSSPSPR
RSAAGTLLSSPRVRFEGFEETRGPAVGDTLSIVYDPAGEGADSPLTMLEE
DEGASPCLLYNFNGWNGEETPLRTPLFPQGDGTLMATVHVPNYAKVLDCI
VSDGQLAFDTEAGQFFHLRIAHVQEERDGTVYNFFQGEDGSITLTGVQAD
NDARELERMIEEELSARETSSAEGQLFDEEPEERRFSSSTVADYEESHLS
DLEGDSEEAGEGKSPLSEDADAGGEAARQLASSGSLGVHVAALEDVGNVP
QQLRAEATAVGEALGISSSMIINELRESFDSVTDADVLTIGELPKALARM
GFDGLEAAELEDLCMRVQGTEAPAAGRCLTLEHFMRIFHLLDTENVGIVI
V

mRNA from alignment at CM002459.1:629842..631430-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2547 ID=rna2547|Name=rna2547|organism=Nannochloropsis gaditana|type=mRNA|length=1589bp|location=Sequence derived from alignment at CM002459.1:629842..631430- (Nannochloropsis gaditana)
CGGATACAGCCAGAGCCCGCAGTCTGGCATCAGGGGCTGCACGCACGGCT
AGCACCTCACTCTTCTTTGCATATCATTTATATCACAGGAGCGATATATC
CGCAGATTCCTCTCTTCTAGCTTGGGTAGACGCCAGATTTCTTTTTGGAA
CAGACGTTTGTACTTTCCTCTACCAAGAACAAGAACGACTACGTCTTCAA
CATCAACTAATTCCGAACCTAGCACTATGACTTCCCGATCGTTTCCCATT
TTGCTTGTGCTTGTGACTATATCGGTAAGCTACGCTTTTATGCCGCAATT
GTCAACAATCCGGCCGCGCTTGACTCGCTGCGAGTCCTCCCTGCAAAATC
GACGGTCCTCTTCGCCCTCGCCTCGGAGGTCTGCAGCAGGAACGCTACTA
TCGAGCCCGAGGGTGCGCTTTGAAGGGTTTGAGGAGACTCGTGGACCCGC
GGTAGGAGACACTTTGTCAATCGTATACGATCCGGCTGGGGAGGGCGCGG
ATTCCCCCTTGACAATGCTGGAGGAGGACGAGGGAGCTAGCCCGTGCCTG
CTCTACAACTTCAATGGGTGGAACGGCGAGGAGACGCCGCTGCGGACGCC
CTTATTTCCTCAAGGCGACGGGACACTTATGGCCACCGTGCATGTACCGA
ACTATGCCAAGGTTCTAGACTGCATTGTATCGGACGGACAGCTTGCATTC
GACACCGAGGCTGGCCAATTTTTCCACTTGCGTATCGCCCACGTGCAAGA
AGAGAGGGATGGCACGGTCTACAACTTCTTCCAAGGAGAAGATGGCTCAA
TAACGTTGACAGGAGTTCAAGCCGACAATGACGCAAGAGAATTGGAACGC
ATGATTGAAGAGGAGCTGTCCGCACGGGAGACATCAAGCGCAGAAGGACA
GTTGTTTGATGAAGAGCCTGAAGAGAGACGCTTCAGTTCCTCAACGGTTG
CGGATTACGAGGAGAGCCATCTAAGTGACTTGGAGGGAGACTCGGAGGAG
GCAGGGGAGGGAAAGAGCCCCTTGTCGGAAGACGCGGACGCGGGTGGGGA
AGCGGCTCGGCAGCTGGCCTCGAGCGGCTCCCTGGGCGTGCACGTCGCGG
CCTTGGAGGATGTGGGGAATGTGCCACAGCAGCTTCGAGCTGAGGCCACG
GCTGTCGGAGAAGCCTTAGGCATTTCTTCCTCGATGATCATCAACGAGCT
GCGGGAGTCATTTGACTCGGTGACGGACGCGGACGTTCTCACCATCGGGG
AGCTGCCCAAGGCCCTGGCGAGGATGGGCTTTGACGGGCTGGAGGCGGCC
GAGCTGGAGGACTTATGCATGCGGGTGCAAGGTACGGAGGCCCCTGCCGC
GGGTCGGTGTCTGACGTTGGAGCACTTCATGCGGATCTTCCACCTCTTGG
ACACGGAGAACGTCGGCATCGTCATCGTGTGAGGATGGGCGATGATAGGT
GGGCCGCCGTCGAAGAGGCATGAATGTTGAACGGTATCTAGAATTAGTTC
GCGGAGAACGTAATGGACAATGGGTCTCGACCCAAAGTGTAGTAAATCTC
GGTAAAAATTAAACTCAAGAGGTAATGGCCTCCCGTCGC

Coding sequence (CDS) from alignment at CM002459.1:629842..631430-

>rna2547 ID=rna2547|Name=rna2547|organism=Nannochloropsis gaditana|type=CDS|length=1206bp|location=Sequence derived from alignment at CM002459.1:629842..631430- (Nannochloropsis gaditana)
ATGACTTCCCGATCGTTTCCCATTTTGCTTGTGCTTGTGACTATATCGGT
AAGCTACGCTTTTATGCCGCAATTGTCAACAATCCGGCCGCGCTTGACTC
GCTGCGAGTCCTCCCTGCAAAATCGACGGTCCTCTTCGCCCTCGCCTCGG
AGGTCTGCAGCAGGAACGCTACTATCGAGCCCGAGGGTGCGCTTTGAAGG
GTTTGAGGAGACTCGTGGACCCGCGGTAGGAGACACTTTGTCAATCGTAT
ACGATCCGGCTGGGGAGGGCGCGGATTCCCCCTTGACAATGCTGGAGGAG
GACGAGGGAGCTAGCCCGTGCCTGCTCTACAACTTCAATGGGTGGAACGG
CGAGGAGACGCCGCTGCGGACGCCCTTATTTCCTCAAGGCGACGGGACAC
TTATGGCCACCGTGCATGTACCGAACTATGCCAAGGTTCTAGACTGCATT
GTATCGGACGGACAGCTTGCATTCGACACCGAGGCTGGCCAATTTTTCCA
CTTGCGTATCGCCCACGTGCAAGAAGAGAGGGATGGCACGGTCTACAACT
TCTTCCAAGGAGAAGATGGCTCAATAACGTTGACAGGAGTTCAAGCCGAC
AATGACGCAAGAGAATTGGAACGCATGATTGAAGAGGAGCTGTCCGCACG
GGAGACATCAAGCGCAGAAGGACAGTTGTTTGATGAAGAGCCTGAAGAGA
GACGCTTCAGTTCCTCAACGGTTGCGGATTACGAGGAGAGCCATCTAAGT
GACTTGGAGGGAGACTCGGAGGAGGCAGGGGAGGGAAAGAGCCCCTTGTC
GGAAGACGCGGACGCGGGTGGGGAAGCGGCTCGGCAGCTGGCCTCGAGCG
GCTCCCTGGGCGTGCACGTCGCGGCCTTGGAGGATGTGGGGAATGTGCCA
CAGCAGCTTCGAGCTGAGGCCACGGCTGTCGGAGAAGCCTTAGGCATTTC
TTCCTCGATGATCATCAACGAGCTGCGGGAGTCATTTGACTCGGTGACGG
ACGCGGACGTTCTCACCATCGGGGAGCTGCCCAAGGCCCTGGCGAGGATG
GGCTTTGACGGGCTGGAGGCGGCCGAGCTGGAGGACTTATGCATGCGGGT
GCAAGGTACGGAGGCCCCTGCCGCGGGTCGGTGTCTGACGTTGGAGCACT
TCATGCGGATCTTCCACCTCTTGGACACGGAGAACGTCGGCATCGTCATC
GTGTGA

Synonyms

Publications