EWM28111.1, cds2539 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28111.1 vs. NCBI_GenBank
Match: gi|585110455|gb|EWM28111.1| (expressed unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 809.29 bits (2089), Expect = 0.000e+0 Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0 Query: 1 MTSRSFPILLVLVTISVSYAFMPQLSTIRPRLTRCESSLQNRRSSSPSPRRSAAGTLLSSPRVRFEGFEETRGPAVGDTLSIVYDPAGEGADSPLTMLEEDEGASPCLLYNFNGWNGEETPLRTPLFPQGDGTLMATVHVPNYAKVLDCIVSDGQLAFDTEAGQFFHLRIAHVQEERDGTVYNFFQGEDGSITLTGVQADNDARELERMIEEELSARETSSAEGQLFDEEPEERRFSSSTVADYEESHLSDLEGDSEEAGEGKSPLSEDADAGGEAARQLASSGSLGVHVAALEDVGNVPQQLRAEATAVGEALGISSSMIINELRESFDSVTDADVLTIGELPKALARMGFDGLEAAELEDLCMRVQGTEAPAAGRCLTLEHFMRIFHLLDTENVGIVIV 401 MTSRSFPILLVLVTISVSYAFMPQLSTIRPRLTRCESSLQNRRSSSPSPRRSAAGTLLSSPRVRFEGFEETRGPAVGDTLSIVYDPAGEGADSPLTMLEEDEGASPCLLYNFNGWNGEETPLRTPLFPQGDGTLMATVHVPNYAKVLDCIVSDGQLAFDTEAGQFFHLRIAHVQEERDGTVYNFFQGEDGSITLTGVQADNDARELERMIEEELSARETSSAEGQLFDEEPEERRFSSSTVADYEESHLSDLEGDSEEAGEGKSPLSEDADAGGEAARQLASSGSLGVHVAALEDVGNVPQQLRAEATAVGEALGISSSMIINELRESFDSVTDADVLTIGELPKALARMGFDGLEAAELEDLCMRVQGTEAPAAGRCLTLEHFMRIFHLLDTENVGIVIV Sbjct: 1 MTSRSFPILLVLVTISVSYAFMPQLSTIRPRLTRCESSLQNRRSSSPSPRRSAAGTLLSSPRVRFEGFEETRGPAVGDTLSIVYDPAGEGADSPLTMLEEDEGASPCLLYNFNGWNGEETPLRTPLFPQGDGTLMATVHVPNYAKVLDCIVSDGQLAFDTEAGQFFHLRIAHVQEERDGTVYNFFQGEDGSITLTGVQADNDARELERMIEEELSARETSSAEGQLFDEEPEERRFSSSTVADYEESHLSDLEGDSEEAGEGKSPLSEDADAGGEAARQLASSGSLGVHVAALEDVGNVPQQLRAEATAVGEALGISSSMIINELRESFDSVTDADVLTIGELPKALARMGFDGLEAAELEDLCMRVQGTEAPAAGRCLTLEHFMRIFHLLDTENVGIVIV 401
BLAST of EWM28111.1 vs. NCBI_GenBank
Match: gi|873225058|emb|CEM24699.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 103.219 bits (256), Expect = 5.891e-21 Identity = 105/366 (28.69%), Postives = 159/366 (43.44%), Query Frame = 0 Query: 75 AVGDTLSIVYDPAGEGADSPLTMLEEDEGASPCLLYNFNGWNGEE-----TPLRTPLFPQGDGTLMATVHVPNYAKVLDCIVSDGQLAFDT-EAGQFFHLRIAHVQEERD-GTVYNFFQ--GEDGSIT--LTGVQADNDARELERMIEEELSARETSSAEGQLFDEEPEERRFSSSTVA-----DYEESHLSDLEGDSEEAGEGKSPLS---------------------EDADAGGEAARQLASSGSLGVHVAALEDVGNVPQQLRAEATAVGEALGISSSMIINELRESFD--SVTDADVLTIGELPKALARMGFDGLEAAELEDLCMRVQGTEAPAAGRCLTLEHFMRIFHLLDTENVGIVIV 401 GDTL + Y P P + +G LY GWNG + P TP+ +GDGTL TV VPN A +D ++DG + FDT + GQ++H+ + H+Q E D G + Q G DG IT TGV E E+ + +A E + +L + T+ + +E +EG E AG+GK LS ED A + S + + + +L AE + VGEALGI ++++E+R +FD + D + + P L +GF L A ++ L + + P A C TL+ F +F LD+ +VG+ +V Sbjct: 15 GAGDTLVVSYRPP------PEAFPPQQQGQ----LYYMGGWNGWDGTQMHAPFMTPMLREGDGTLRCTVGVPNDALSVDFCITDG-IRFDTNDDGQYYHIHVTHIQREADNGNIICLRQDVGGDGQITEVQTGVIEKKSGEEFEQELN---TAYEQYMKQKELGGSSSSSEAGPTITLVLEQDEEGQEHDTPAVEG--ENAGDGKLRLSMYSSGGDVGGIGGFEREEQLDEDRRKQLVKAELQRTQQSFKMDTKLTQGREHKSSKLFAEGSLVGEALGI-PRLVMSEIRNTFDRFDMDDTHTVPLERFPDLLDELGFSDLNAEDISQLVDKHILAQRPGANDC-TLQEFCGVFKELDSADVGLEMV 362
BLAST of EWM28111.1 vs. NCBI_GenBank
Match: gi|299470139|emb|CBN78168.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 91.2781 bits (225), Expect = 1.182e-16 Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 0 Query: 75 AVGDTLSIVYDPAG---EGADSPLTMLEEDEGASPCLLY--NFNGWNGEETPLRTPLFPQGD-GTLMATVHVPNYAKVLDCIVSDGQLAFDT-EAGQFFHLRIAHVQE-ERDGTVYNFFQGEDGSITLTGVQADNDARELERMIEE 212 A +T+ I+Y P EGADS LLY FNGW+GEE + P+ P GD G +++VPN+A+VLD +V+DG + +DT G F+H + HV+E ++ G + + Q DG++ TG+ D +ELERM++E Sbjct: 107 AAEETVEIIYTPPTGLFEGADS--------------LLYCGGFNGWDGEEDGVTMPMMPAGDEGNFRISINVPNFARVLDFVVTDG-VRYDTGPEGLFYHAMVTHVREADKAGNIITYRQEADGTLIKTGMIEKVDPQELERMMDE 237
BLAST of EWM28111.1 vs. NCBI_GenBank
Match: gi|1189391268|gb|OSX78205.1| (hypothetical protein BU14_0116s0025 [Porphyra umbilicalis]) HSP 1 Score: 63.1586 bits (152), Expect = 2.377e-7 Identity = 45/138 (32.61%), Postives = 71/138 (51.45%), Query Frame = 0 Query: 75 AVGDTLSIVYDPAGEGADSPLTMLEEDEGASPCLLYNFNGWNGEE--TPLRTPLFPQGDGTLMATVHVPNYAKVLD-CIVSD---GQLAFDTEAGQFFHLRIAH-VQEERDGTVYNFFQG---EDGSITLTGVQADND 202 +VGDTLS+ Y P P+ + ED+ C FNGW+ E TPL P +G+ +V VPN+A+VLD V D G + +D +G FH+ + + ++ +G V ++ G E+ T +G++ D D Sbjct: 87 SVGDTLSVTYTP-------PVGLFTEDDVV--CYAGGFNGWSSETDTTPLLFPAQSLFNGSYRVSVVVPNFARVLDFAFVQDAAAGGVRYDDNSGTLFHIPVVNQLRLTANGEVQSYVAGSEDEEADGTRSGLKVDGD 215 The following BLAST results are available for this feature:
BLAST of EWM28111.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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