EWM28111.1, cds2539 (CDS) Nannochloropsis gaditana

Overview
NameEWM28111.1
Unique Namecds2539
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:629999..631204 -

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Properties
Property NameValue
Protein idEWM28111.1
Productexpressed unknown protein
Orig transcript idgnl|cribi|Naga_100036g39.2531.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:629999..631204 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28111.1 vs. NCBI_GenBank
Match: gi|585110455|gb|EWM28111.1| (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 809.29 bits (2089), Expect = 0.000e+0
Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0
Query:    1 MTSRSFPILLVLVTISVSYAFMPQLSTIRPRLTRCESSLQNRRSSSPSPRRSAAGTLLSSPRVRFEGFEETRGPAVGDTLSIVYDPAGEGADSPLTMLEEDEGASPCLLYNFNGWNGEETPLRTPLFPQGDGTLMATVHVPNYAKVLDCIVSDGQLAFDTEAGQFFHLRIAHVQEERDGTVYNFFQGEDGSITLTGVQADNDARELERMIEEELSARETSSAEGQLFDEEPEERRFSSSTVADYEESHLSDLEGDSEEAGEGKSPLSEDADAGGEAARQLASSGSLGVHVAALEDVGNVPQQLRAEATAVGEALGISSSMIINELRESFDSVTDADVLTIGELPKALARMGFDGLEAAELEDLCMRVQGTEAPAAGRCLTLEHFMRIFHLLDTENVGIVIV 401
            MTSRSFPILLVLVTISVSYAFMPQLSTIRPRLTRCESSLQNRRSSSPSPRRSAAGTLLSSPRVRFEGFEETRGPAVGDTLSIVYDPAGEGADSPLTMLEEDEGASPCLLYNFNGWNGEETPLRTPLFPQGDGTLMATVHVPNYAKVLDCIVSDGQLAFDTEAGQFFHLRIAHVQEERDGTVYNFFQGEDGSITLTGVQADNDARELERMIEEELSARETSSAEGQLFDEEPEERRFSSSTVADYEESHLSDLEGDSEEAGEGKSPLSEDADAGGEAARQLASSGSLGVHVAALEDVGNVPQQLRAEATAVGEALGISSSMIINELRESFDSVTDADVLTIGELPKALARMGFDGLEAAELEDLCMRVQGTEAPAAGRCLTLEHFMRIFHLLDTENVGIVIV
Sbjct:    1 MTSRSFPILLVLVTISVSYAFMPQLSTIRPRLTRCESSLQNRRSSSPSPRRSAAGTLLSSPRVRFEGFEETRGPAVGDTLSIVYDPAGEGADSPLTMLEEDEGASPCLLYNFNGWNGEETPLRTPLFPQGDGTLMATVHVPNYAKVLDCIVSDGQLAFDTEAGQFFHLRIAHVQEERDGTVYNFFQGEDGSITLTGVQADNDARELERMIEEELSARETSSAEGQLFDEEPEERRFSSSTVADYEESHLSDLEGDSEEAGEGKSPLSEDADAGGEAARQLASSGSLGVHVAALEDVGNVPQQLRAEATAVGEALGISSSMIINELRESFDSVTDADVLTIGELPKALARMGFDGLEAAELEDLCMRVQGTEAPAAGRCLTLEHFMRIFHLLDTENVGIVIV 401          
BLAST of EWM28111.1 vs. NCBI_GenBank
Match: gi|873225058|emb|CEM24699.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 103.219 bits (256), Expect = 5.891e-21
Identity = 105/366 (28.69%), Postives = 159/366 (43.44%), Query Frame = 0
Query:   75 AVGDTLSIVYDPAGEGADSPLTMLEEDEGASPCLLYNFNGWNGEE-----TPLRTPLFPQGDGTLMATVHVPNYAKVLDCIVSDGQLAFDT-EAGQFFHLRIAHVQEERD-GTVYNFFQ--GEDGSIT--LTGVQADNDARELERMIEEELSARETSSAEGQLFDEEPEERRFSSSTVA-----DYEESHLSDLEGDSEEAGEGKSPLS---------------------EDADAGGEAARQLASSGSLGVHVAALEDVGNVPQQLRAEATAVGEALGISSSMIINELRESFD--SVTDADVLTIGELPKALARMGFDGLEAAELEDLCMRVQGTEAPAAGRCLTLEHFMRIFHLLDTENVGIVIV 401
              GDTL + Y P       P     + +G     LY   GWNG +      P  TP+  +GDGTL  TV VPN A  +D  ++DG + FDT + GQ++H+ + H+Q E D G +    Q  G DG IT   TGV       E E+ +    +A E    + +L           + T+      + +E     +EG  E AG+GK  LS                     ED       A    +  S  +     +   +   +L AE + VGEALGI   ++++E+R +FD   + D   + +   P  L  +GF  L A ++  L  +    + P A  C TL+ F  +F  LD+ +VG+ +V
Sbjct:   15 GAGDTLVVSYRPP------PEAFPPQQQGQ----LYYMGGWNGWDGTQMHAPFMTPMLREGDGTLRCTVGVPNDALSVDFCITDG-IRFDTNDDGQYYHIHVTHIQREADNGNIICLRQDVGGDGQITEVQTGVIEKKSGEEFEQELN---TAYEQYMKQKELGGSSSSSEAGPTITLVLEQDEEGQEHDTPAVEG--ENAGDGKLRLSMYSSGGDVGGIGGFEREEQLDEDRRKQLVKAELQRTQQSFKMDTKLTQGREHKSSKLFAEGSLVGEALGI-PRLVMSEIRNTFDRFDMDDTHTVPLERFPDLLDELGFSDLNAEDISQLVDKHILAQRPGANDC-TLQEFCGVFKELDSADVGLEMV 362          
BLAST of EWM28111.1 vs. NCBI_GenBank
Match: gi|299470139|emb|CBN78168.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 91.2781 bits (225), Expect = 1.182e-16
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 0
Query:   75 AVGDTLSIVYDPAG---EGADSPLTMLEEDEGASPCLLY--NFNGWNGEETPLRTPLFPQGD-GTLMATVHVPNYAKVLDCIVSDGQLAFDT-EAGQFFHLRIAHVQE-ERDGTVYNFFQGEDGSITLTGVQADNDARELERMIEE 212
            A  +T+ I+Y P     EGADS              LLY   FNGW+GEE  +  P+ P GD G    +++VPN+A+VLD +V+DG + +DT   G F+H  + HV+E ++ G +  + Q  DG++  TG+    D +ELERM++E
Sbjct:  107 AAEETVEIIYTPPTGLFEGADS--------------LLYCGGFNGWDGEEDGVTMPMMPAGDEGNFRISINVPNFARVLDFVVTDG-VRYDTGPEGLFYHAMVTHVREADKAGNIITYRQEADGTLIKTGMIEKVDPQELERMMDE 237          
BLAST of EWM28111.1 vs. NCBI_GenBank
Match: gi|1189391268|gb|OSX78205.1| (hypothetical protein BU14_0116s0025 [Porphyra umbilicalis])

HSP 1 Score: 63.1586 bits (152), Expect = 2.377e-7
Identity = 45/138 (32.61%), Postives = 71/138 (51.45%), Query Frame = 0
Query:   75 AVGDTLSIVYDPAGEGADSPLTMLEEDEGASPCLLYNFNGWNGEE--TPLRTPLFPQGDGTLMATVHVPNYAKVLD-CIVSD---GQLAFDTEAGQFFHLRIAH-VQEERDGTVYNFFQG---EDGSITLTGVQADND 202
            +VGDTLS+ Y P       P+ +  ED+    C    FNGW+ E   TPL  P     +G+   +V VPN+A+VLD   V D   G + +D  +G  FH+ + + ++   +G V ++  G   E+   T +G++ D D
Sbjct:   87 SVGDTLSVTYTP-------PVGLFTEDDVV--CYAGGFNGWSSETDTTPLLFPAQSLFNGSYRVSVVVPNFARVLDFAFVQDAAAGGVRYDDNSGTLFHIPVVNQLRLTANGEVQSYVAGSEDEEADGTRSGLKVDGD 215          
The following BLAST results are available for this feature:
BLAST of EWM28111.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585110455|gb|EWM28111.1|0.000e+0100.00expressed unknown protein [Nannochloropsis gaditan... [more]
gi|873225058|emb|CEM24699.1|5.891e-2128.69unnamed protein product [Vitrella brassicaformis C... [more]
gi|299470139|emb|CBN78168.1|1.182e-1638.36expressed unknown protein [Ectocarpus siliculosus][more]
gi|1189391268|gb|OSX78205.1|2.377e-732.61hypothetical protein BU14_0116s0025 [Porphyra umbi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2547rna2547Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications