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Properties
| Property Name | Value |
|---|
| Product | ATPase, vacuolar ER assembly factor, Vma12 |
| Orig transcript id | gnl|cribi|Naga_100036g42.2559.mrna |
| Orig protein id | gnl|cribi|Naga_100036g42.2559 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:621297..622655 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2543 ID=rna2543|Name=rna2543|organism=Nannochloropsis gaditana|type=mRNA|length=1591bp
CGTGCTCATTCAGCCTGATTTGCCATACATCTCACAGCATCTGTGTACCC
AGACATGTCCAAACTGAAAAGGATAAAGTTGAAAAGTCAGGACCCTGTCG
AGATCGTCAAAGTCCGAGACACAATAGACGATCGCAACAACGACGACGCA
GAGGAAGAGGGAACTAGACAGTTGCTGAATGGCGGCGTTGAGGGAAAAGA
GGGTGACAAGACCCCTCCTCCTGACGACTGTGAGAGGCAGCTACTGTCAA
GCAGTAAGCAAGTCACAGAACTGGTCCTGCAAACAGAGCGAGACTTATTG
GCTAGGAATTCTCTCCCAGAAAAGAGCTTTAAAGTGCTTTCATGGAATGT
CAATGGTCTCAACGGCATTCTGAATGGGAAGGCTGCCCAAATTAACGGCA
ACAAGGGCTCAAACGTATTGCAACAGTTGGTACAAGAAGAAGGGAATGTA
GACGTAATTTTTTTACAGGAAACTAAACTGCAAGATGCAAAGTGTGCAGC
CTTTGAAGACGTTTTGCCAGGTTACGTCGCCCACTGGTCATGTTCCAAAA
CCAAGAAAGGTTACGCCGGGGTGGCGGCATTTGTGCATGAGAAATACGTA
AAAAGATGCATCAGCTCCTATTCGGATGCTAACAAAGGGTCTTCAAGGGG
TAAGCAAGCCACGCTGGCCTCATTTTTCCCGACGAAAGGCAAAGAGACAG
AGCCAACAAAGGGAGCAGAGGGGCGAATCGCCGCAATGAAGACTGCGGCT
TGTAAAAGTGCCTCAATGGCCTCCTCGTGCAGCATCAAAGATAAAGAAAT
CGAGGACGGCGATAGTAGCGTTGAAGCGCTCCAAGTTCTGAGTGTGCGCC
GCGGTTGTGACGGTGAGGATGACGAGGACGAGGAAGGCCGGGTGTTGACC
CTGGAGTTCGGCTCCTTCTGGGTGGTCGGCGTCTACGTCACAAACTCGGG
CATGAAACTCGAGCGCTTAGAGTACAGACTGAAGCAATGGAACCCCTCGT
TCCAAGCATACTTGGCCCGCCTGAACGCTGTGAAGCCGGCGCTGGTGGTT
GGGGACATGAACGTAGCCCCCGAGGCTTCAGATGTCTATAATGCGGGGGC
CAAGCATCTGGCCAAGGTGCCAGGCCTGACGCCCGAGGAGCGCGAGGCGC
ACGCGGCCTGGTTAAGGACCGGGTGGAAAGACACGTTCAGGGCGCTCCAC
CCCGACGCAAGGGGGGCCTACACGTATTGGAACGTAAAGACACGGGCGCG
GGCCGAGAACAAAGGGCTGCGCTTGGACTTGGCCGTGATCGGGGCGGCGG
ACATGGACGGCGGGCGCGGTGTTCGTGTGCGGGATTCCTTCATATTGCAC
GAAGCCACGATCGGGTTCTCGGACCATGCGCCTATTGGCGTGGTGCTCGA
TCTAGGGGCGTGACTGGCATACGAACAGGCGAAATGGGTCTCTCCAGCAG
ACCCCGCCACCTTATTGAAAGGAAAGAATCATCAATAGCAATGAACTCGC
AAGTGGCAGGTTTTCTGTTTTCCAAGACTTTGTTTGTACGATTTGTCTCG
CAATACCCAGTCCATCGCACCCGCACCCTAGGCGCACAAGG back to topprotein sequence of rna2543 >rna2543-protein ID=rna2543-protein|Name=rna2543|organism=Nannochloropsis gaditana|type=polypeptide|length=257bp
MVGQPPLVEPLPLLRIRLPGPQAVELMLQARKLSTEADGPGDEHLGSYGG
EQDVSPAQLRAAYVVMKHQGQSHENNFIETVMRGARSVYPRHTLHKEELA
LRDKMSEEWRRKLHHRHQQREYDRMVKNVYWGGGKKPDPETRPVYQASIA
FNMLAATFTAGFLGWYAAGAFLSKYEQRLMVAIIAAMFMLVVEMTLYIIR
TSEIERYAPKRERNVQMGQKGLRIPTGFQDDIQFWRDSSGNRKAKMISSE
GVKQKVL back to topmRNA from alignment at CM002459.1:621297..622655+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2543 ID=rna2543|Name=rna2543|organism=Nannochloropsis gaditana|type=mRNA|length=1359bp|location=Sequence derived from alignment at CM002459.1:621297..622655+ (Nannochloropsis gaditana)
CGCTAATGCTTTTTCGTCGTATCTTTCTGAAGACCGAAATTCAGTCCCCC
ACACGATGACTCTTTCAGACATGGGTAAGGTGACATCACCCAACACCTTG
ATTTATCTCACAGGTAGCTCACCTCACTTCTTTATTCGGAAGTATCATGG
TCGGCCAACCTCCCCTTGTGGAGCCTCTACCGCTATTACGTATTCGACTA
CCAGGACCTCAAGCAGTTGAGCTCATGCTACAAGCGCGAAAACTTTCGAC
AGAGGCAGATGGTCCAGGTGATGAACACCTTGGTTCATATGGCGGCGAGC
AAGATGTTTCCCCCGCCCAATTGCGAGCGGCTTATGTGGTGATGAAACAC
CAAGGTCAGTCTCATGAGAATAACTTCATAGAAACTGTGATGCGGGGCGC
TCGATCCGTCTATCCTCGGCACACGCTGCACAAGGAGGAATTGGCCCTTC
GGGATAAAATGAGTGAAGAATGGCGGCGAAAGTTGCATCACCGGCATCAA
CAGCGCGAATACGACCGAATGGTGAAGAACGTGTattggggaggcggaaa
gaaGCCCGACCCTGAGACGCGCCCTGTTTACCAAGCCTCGATTGCATTTA
ACATGCTTGCGGCCACTTTCACAGCCGGCTTTTTAGGATGGTACGCAGCC
GGTGCGTTCCTGAGTAAGTACGAGCAGAGGCTAATGGTTGCAATCATTGC
AGCTATGTTcatgctggtggtggagatgacACTTTACATCATTCGCACAA
GCGAGATAGAGAGGTATGCCCCCAAAAGAGAACGGAACGTGCAAATGGGA
CAGAAAGGCTTACGCATTCCAACCGGCTTTCAGGATGATATCCAGTTTTG
GAGAGACTCGAGTGGTAATAGGAAAGCAAAAATGATCAGTTCGGAGGGTG
TAAAGCAGAAGGTACTGTGAATAATGGCGTGAGAGCTGCAGAGTAATTTT
GGAAGCTGTACATAAGCAAAAAGTATCGACCTTGATTCGGTAACAGTGGC
AGCAAAACCTGTGAGCACTTAATTTACATGGTATCAGGGCCTGCCACTGT
CAAGAGGATAGCTCTGATGAGGAGCACTAGTCATAGCCTGTATAGCCTAG
TGAGCCTTTCTTATGCACACGTTGAGCACACAACTTCCGCCCTCTTGTTA
TGCACACGTTAGCACAACGACCGCCTTCTCAACTTAAGCGGACTGTGGGA
ATGCGCTGAAGACCAGGGGGTGATACTACCAAGATATCACGGGGACCAAC
CCATCGAACATTGCTCTTGTGCACGCTCCTCGGAGAGATAGCGGCACGCA
CTTTCAGTGGCTCAAATATAAGAGCAGGACAGGCCAGCAGACCTGGGCGC
ACCGGCACC back to topCoding sequence (CDS) from alignment at CM002459.1:621297..622655+ >rna2543 ID=rna2543|Name=rna2543|organism=Nannochloropsis gaditana|type=CDS|length=774bp|location=Sequence derived from alignment at CM002459.1:621297..622655+ (Nannochloropsis gaditana)
ATGGTCGGCCAACCTCCCCTTGTGGAGCCTCTACCGCTATTACGTATTCG
ACTACCAGGACCTCAAGCAGTTGAGCTCATGCTACAAGCGCGAAAACTTT
CGACAGAGGCAGATGGTCCAGGTGATGAACACCTTGGTTCATATGGCGGC
GAGCAAGATGTTTCCCCCGCCCAATTGCGAGCGGCTTATGTGGTGATGAA
ACACCAAGGTCAGTCTCATGAGAATAACTTCATAGAAACTGTGATGCGGG
GCGCTCGATCCGTCTATCCTCGGCACACGCTGCACAAGGAGGAATTGGCC
CTTCGGGATAAAATGAGTGAAGAATGGCGGCGAAAGTTGCATCACCGGCA
TCAACAGCGCGAATACGACCGAATGGTGAAGAACGTGTattggggaggcg
gaaagaaGCCCGACCCTGAGACGCGCCCTGTTTACCAAGCCTCGATTGCA
TTTAACATGCTTGCGGCCACTTTCACAGCCGGCTTTTTAGGATGGTACGC
AGCCGGTGCGTTCCTGAGTAAGTACGAGCAGAGGCTAATGGTTGCAATCA
TTGCAGCTATGTTcatgctggtggtggagatgacACTTTACATCATTCGC
ACAAGCGAGATAGAGAGGTATGCCCCCAAAAGAGAACGGAACGTGCAAAT
GGGACAGAAAGGCTTACGCATTCCAACCGGCTTTCAGGATGATATCCAGT
TTTGGAGAGACTCGAGTGGTAATAGGAAAGCAAAAATGATCAGTTCGGAG
GGTGTAAAGCAGAAGGTACTGTGA back to top
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