EWM28139.1, cds2535 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28139.1 vs. NCBI_GenBank
Match: gi|585110483|gb|EWM28139.1| (ATPase, vacuolar ER assembly factor, Vma12 [Nannochloropsis gaditana]) HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0 Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0
Query: 1 MVGQPPLVEPLPLLRIRLPGPQAVELMLQARKLSTEADGPGDEHLGSYGGEQDVSPAQLRAAYVVMKHQGQSHENNFIETVMRGARSVYPRHTLHKEELALRDKMSEEWRRKLHHRHQQREYDRMVKNVYWGGGKKPDPETRPVYQASIAFNMLAATFTAGFLGWYAAGAFLSKYEQRLMVAIIAAMFMLVVEMTLYIIRTSEIERYAPKRERNVQMGQKGLRIPTGFQDDIQFWRDSSGNRKAKMISSEGVKQKVL 257
MVGQPPLVEPLPLLRIRLPGPQAVELMLQARKLSTEADGPGDEHLGSYGGEQDVSPAQLRAAYVVMKHQGQSHENNFIETVMRGARSVYPRHTLHKEELALRDKMSEEWRRKLHHRHQQREYDRMVKNVYWGGGKKPDPETRPVYQASIAFNMLAATFTAGFLGWYAAGAFLSKYEQRLMVAIIAAMFMLVVEMTLYIIRTSEIERYAPKRERNVQMGQKGLRIPTGFQDDIQFWRDSSGNRKAKMISSEGVKQKVL
Sbjct: 1 MVGQPPLVEPLPLLRIRLPGPQAVELMLQARKLSTEADGPGDEHLGSYGGEQDVSPAQLRAAYVVMKHQGQSHENNFIETVMRGARSVYPRHTLHKEELALRDKMSEEWRRKLHHRHQQREYDRMVKNVYWGGGKKPDPETRPVYQASIAFNMLAATFTAGFLGWYAAGAFLSKYEQRLMVAIIAAMFMLVVEMTLYIIRTSEIERYAPKRERNVQMGQKGLRIPTGFQDDIQFWRDSSGNRKAKMISSEGVKQKVL 257
BLAST of EWM28139.1 vs. NCBI_GenBank
Match: gi|1210512396|dbj|GAX28510.1| (hypothetical protein FisN_12Hh125 [Fistulifera solaris]) HSP 1 Score: 58.9214 bits (141), Expect = 8.487e-7 Identity = 35/131 (26.72%), Postives = 66/131 (50.38%), Query Frame = 0
Query: 104 KMSEEWRRKLHH---RHQQREYDRMVKNVYWGGGKKPDPETRPV-YQASIAFNMLAATFTAGFLGWYAAGAFLSKYEQ-----------RLMVAIIAAMFMLVVEMTLYIIRTSEIERYAPKRERNVQMGQ 219
K EE+R+++ +H++R Y + NV +K D TR + Y AS+ NM+ A + G ++ AG L + + R+++ +++ + ML +EM L++IRT E++ K+ + Q
Sbjct: 92 KEQEEYRKRIERLALKHEERRYTELTSNVN-KAPEKDDVTTRSMTYAASVGLNMVIAPLSFGCFMYFFAGGLLDYFLESDGSSSKSDMKRVIIGVVSGVIMLFIEMLLFVIRTHEMDEAMRKKSKRAPQTQ 221 The following BLAST results are available for this feature:
BLAST of EWM28139.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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