rna2542, rna2542 (mRNA) Nannochloropsis gaditana

Overview
Namerna2542
Unique Namerna2542
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1200
Alignment locationCM002459.1:619585..621175 -

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Properties
Property NameValue
ProductEndonuclease/exonuclease/phosphatase
Orig transcript idgnl|cribi|Naga_100036g43.2556.mrna
Orig protein idgnl|cribi|Naga_100036g43.2556
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:619585..621175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100036g43gene2430Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28136.1cds2534Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2542rna2542-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2542 ID=rna2542|Name=rna2542|organism=Nannochloropsis gaditana|type=mRNA|length=1200bp
ATGAGTGATGCTGCAGCGCGTCGCCGGACGAGGATACTGTCTGGCAGCAA
GGACCGGATGAAGCTTGTCTCCGGGTCTTCAATCCAGGACAAAAGCGAAG
TCGATGCACCTCCCGAGGCCGCATATGATTTGGCATCGGGTGGGAAGGAG
GAGGCAGAGGACTCTAATGTTTCTGAGGTTGGGACCAGCAAGGAGGCAGG
GATCCGCGCCCGCAATCGACGACGGCTGCAGGCTCGCAACATCAAGATTG
AGACAGTGCCAACTGAGGCGGATCATTTGAATGCCGGCCAATCCGATATG
CCGCCTGGCACCAACGACACCCCCCTGGGGGGCTCGGAGAAGCGCTCCTC
GAGCCCCTCTTTGTTGCCTTACGAGGGATTTTCGCACTCGGCCTCTAATA
CCGGCGCCTTGACCACCGGGGGAAATGTTTTGCGCAAACGCTTCCAAGCG
TCTCGGTATGGGGACCGAGGAGCGACTGCGACCGACGCAAATGCCGGAGT
CTCATCTCGTCCGGAGAACCCTACATCGCCCGCGCCGAGCCTCCTCCAGG
CTCTAACAGCCTCCGACGTCCTTCTCCGCCTCTGGCCTCTGTGTGCGGCC
GGCCTTCTCTTCGGTGTGTGGGTGGCCGGGCTGAACGCGACTGTCTTGGC
CAGGGTGAGGGGCAGCACGGGCATGGAGTCGCCCGCACACCATCAGGCAC
GGGACGCGCTCGATGAATTCGTAGCCAATGTAGGGGCGATTTCTCCTCCA
AATATAGGCGGCGACAAAGATTATCTGGGACTTTGGGACAGGGACAGGAT
AGGAGCCAATGTGCTGAGGCGGATCCGGAATCTCTTTTTGCCCGAAGTAT
TCGATTCCTTCCCTTTACCCTTAATAGCTCTTATCTTGCACGGAGTGTTG
ATATTTTCGCTGGGAATGTTGCGTGTAACGAGTAGAAAGGGGACTGCTGG
CGACAATATCAAAGATTGGGCTTCGACGGTGCCTTTGGAAGGCGAAGGCG
GGGGCGAGAGTGGACGCGAGGGCGAGACCGGCGCGAAAGCCAGCCTAGAT
CAGGTGTCTGATCGATCAATGCTGGCAAGTCTAGCGCACACGTTTGGCTT
GGGCCCTGCCTTGGAGGCCTTGAAGGTGCTGCAGGCGGCATGGCAGGACA
TGCTCATTTTTAGCTTCTTTTTCCTTCTCGCTCTCGCCTTGTGCGCCTAG
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protein sequence of rna2542

>rna2542-protein ID=rna2542-protein|Name=rna2542|organism=Nannochloropsis gaditana|type=polypeptide|length=452bp
MSKLKRIKLKSQDPVEIVKVRDTIDDRNNDDAEEEGTRQLLNGGVEGKEG
DKTPPPDDCERQLLSSSKQVTELVLQTERDLLARNSLPEKSFKVLSWNVN
GLNGILNGKAAQINGNKGSNVLQQLVQEEGNVDVIFLQETKLQDAKCAAF
EDVLPGYVAHWSCSKTKKGYAGVAAFVHEKYVKRCISSYSDANKGSSRGK
QATLASFFPTKGKETEPTKGAEGRIAAMKTAACKSASMASSCSIKDKEIE
DGDSSVEALQVLSVRRGCDGEDDEDEEGRVLTLEFGSFWVVGVYVTNSGM
KLERLEYRLKQWNPSFQAYLARLNAVKPALVVGDMNVAPEASDVYNAGAK
HLAKVPGLTPEEREAHAAWLRTGWKDTFRALHPDARGAYTYWNVKTRARA
ENKGLRLDLAVIGAADMDGGRGVRVRDSFILHEATIGFSDHAPIGVVLDL
GA
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mRNA from alignment at CM002459.1:619585..621175-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2542 ID=rna2542|Name=rna2542|organism=Nannochloropsis gaditana|type=mRNA|length=1591bp|location=Sequence derived from alignment at CM002459.1:619585..621175- (Nannochloropsis gaditana)
CGTGCTCATTCAGCCTGATTTGCCATACATCTCACAGCATCTGTGTACCC
AGACATGTCCAAACTGAAAAGGATAAAGTTGAAAAGTCAGGACCCTGTCG
AGATCGTCAAAGTCCGAGACACAATAGACGATCGCAACAACGACGACGCA
GAGGAAGAGGGAACTAGACAGTTGCTGAATGGCGGCGTTGAGGGAAAAGA
GGGTGACAAGACCCCTCCTCCTGACGACTGTGAGAGGCAGCTACTGTCAA
GCAGTAAGCAAGTCACAGAACTGGTCCTGCAAACAGAGCGAGACTTATTG
GCTAGGAATTCTCTCCCAGAAAAGAGCTTTAAAGTGCTTTCATGGAATGT
CAATGGTCTCAACGGCATTCTGAATGGGAAGGCTGCCCAAATTAACGGCA
ACAAGGGCTCAAACGTATTGCAACAGTTGGTACAAGAAGAAGGGAATGTA
GACGTAATTTTTTTACAGGAAACTAAACTGCAAGATGCAAAGTGTGCAGC
CTTTGAAGACGTTTTGCCAGGTTACGTCGCCCACTGGTCATGTTCCAAAA
CCAAGAAAGGTTACGCCGGGGTGGCGGCATTTGTGCATGAGAAATACGTA
AAAAGATGCATCAGCTCCTATTCGGATGCTAACAAAGGGTCTTCAAGGGG
TAAGCAAGCCACGCTGGCCTCATTTTTCCCGACGAAAGGCAAAGAGACAG
AGCCAACAAAGGGAGCAGAGGGGCGAATCGCCGCAATGAAGACTGCGGCT
TGTAAAAGTGCCTCAATGGCCTCCTCGTGCAGCATCAAAGATAAAGAAAT
CGAGGACGGCGATAGTAGCGTTGAAGCGCTCCAAGTTCTGAGTGTGCGCC
GCGGTTGTGACGGTGAGGATGACGAGGACGAGGAAGGCCGGGTGTTGACC
CTGGAGTTCGGCTCCTTCTGGGTGGTCGGCGTCTACGTCACAAACTCGGG
CATGAAACTCGAGCGCTTAGAGTACAGACTGAAGCAATGGAACCCCTCGT
TCCAAGCATACTTGGCCCGCCTGAACGCTGTGAAGCCGGCGCTGGTGGTT
GGGGACATGAACGTAGCCCCCGAGGCTTCAGATGTCTATAATGCGGGGGC
CAAGCATCTGGCCAAGGTGCCAGGCCTGACGCCCGAGGAGCGCGAGGCGC
ACGCGGCCTGGTTAAGGACCGGGTGGAAAGACACGTTCAGGGCGCTCCAC
CCCGACGCAAGGGGGGCCTACACGTATTGGAACGTAAAGACACGGGCGCG
GGCCGAGAACAAAGGGCTGCGCTTGGACTTGGCCGTGATCGGGGCGGCGG
ACATGGACGGCGGGCGCGGTGTTCGTGTGCGGGATTCCTTCATATTGCAC
GAAGCCACGATCGGGTTCTCGGACCATGCGCCTATTGGCGTGGTGCTCGA
TCTAGGGGCGTGACTGGCATACGAACAGGCGAAATGGGTCTCTCCAGCAG
ACCCCGCCACCTTATTGAAAGGAAAGAATCATCAATAGCAATGAACTCGC
AAGTGGCAGGTTTTCTGTTTTCCAAGACTTTGTTTGTACGATTTGTCTCG
CAATACCCAGTCCATCGCACCCGCACCCTAGGCGCACAAGG
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Coding sequence (CDS) from alignment at CM002459.1:619585..621175-

>rna2542 ID=rna2542|Name=rna2542|organism=Nannochloropsis gaditana|type=CDS|length=1359bp|location=Sequence derived from alignment at CM002459.1:619585..621175- (Nannochloropsis gaditana)
ATGTCCAAACTGAAAAGGATAAAGTTGAAAAGTCAGGACCCTGTCGAGAT
CGTCAAAGTCCGAGACACAATAGACGATCGCAACAACGACGACGCAGAGG
AAGAGGGAACTAGACAGTTGCTGAATGGCGGCGTTGAGGGAAAAGAGGGT
GACAAGACCCCTCCTCCTGACGACTGTGAGAGGCAGCTACTGTCAAGCAG
TAAGCAAGTCACAGAACTGGTCCTGCAAACAGAGCGAGACTTATTGGCTA
GGAATTCTCTCCCAGAAAAGAGCTTTAAAGTGCTTTCATGGAATGTCAAT
GGTCTCAACGGCATTCTGAATGGGAAGGCTGCCCAAATTAACGGCAACAA
GGGCTCAAACGTATTGCAACAGTTGGTACAAGAAGAAGGGAATGTAGACG
TAATTTTTTTACAGGAAACTAAACTGCAAGATGCAAAGTGTGCAGCCTTT
GAAGACGTTTTGCCAGGTTACGTCGCCCACTGGTCATGTTCCAAAACCAA
GAAAGGTTACGCCGGGGTGGCGGCATTTGTGCATGAGAAATACGTAAAAA
GATGCATCAGCTCCTATTCGGATGCTAACAAAGGGTCTTCAAGGGGTAAG
CAAGCCACGCTGGCCTCATTTTTCCCGACGAAAGGCAAAGAGACAGAGCC
AACAAAGGGAGCAGAGGGGCGAATCGCCGCAATGAAGACTGCGGCTTGTA
AAAGTGCCTCAATGGCCTCCTCGTGCAGCATCAAAGATAAAGAAATCGAG
GACGGCGATAGTAGCGTTGAAGCGCTCCAAGTTCTGAGTGTGCGCCGCGG
TTGTGACGGTGAGGATGACGAGGACGAGGAAGGCCGGGTGTTGACCCTGG
AGTTCGGCTCCTTCTGGGTGGTCGGCGTCTACGTCACAAACTCGGGCATG
AAACTCGAGCGCTTAGAGTACAGACTGAAGCAATGGAACCCCTCGTTCCA
AGCATACTTGGCCCGCCTGAACGCTGTGAAGCCGGCGCTGGTGGTTGGGG
ACATGAACGTAGCCCCCGAGGCTTCAGATGTCTATAATGCGGGGGCCAAG
CATCTGGCCAAGGTGCCAGGCCTGACGCCCGAGGAGCGCGAGGCGCACGC
GGCCTGGTTAAGGACCGGGTGGAAAGACACGTTCAGGGCGCTCCACCCCG
ACGCAAGGGGGGCCTACACGTATTGGAACGTAAAGACACGGGCGCGGGCC
GAGAACAAAGGGCTGCGCTTGGACTTGGCCGTGATCGGGGCGGCGGACAT
GGACGGCGGGCGCGGTGTTCGTGTGCGGGATTCCTTCATATTGCACGAAG
CCACGATCGGGTTCTCGGACCATGCGCCTATTGGCGTGGTGCTCGATCTA
GGGGCGTGA
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Synonyms
Publications