rna2531, rna2531 (mRNA) Nannochloropsis gaditana

Overview
Namerna2531
Unique Namerna2531
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length566
Alignment locationCM002459.1:596451..597953 -

Link to JBrowse

Properties
Property NameValue
Productc2h2 zinc finger protein
Orig transcript idgnl|cribi|Naga_100004g175.9153.mrna
Orig protein idgnl|cribi|Naga_100004g175.9153
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:596451..597953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g175gene2419Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2531rna2531-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28222.1cds2523Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2531 ID=rna2531|Name=rna2531|organism=Nannochloropsis gaditana|type=mRNA|length=566bp
CATGAGAATGGATGCTGAATCTATGGAGGCTGAGATCGACCCGCCGGCAA
CAACTTGAACCAAAAGGACGGCGTTGGTAGGAGTTCGTCCCGGGAGCCTT
TCGTAGCACAATGCGGGCGCATATTGACGCAATTTTACGATATCAGTGGA
TTAAATACAACGAAGCTTCGACCTTTCTTTGTCAGAATCGATCCTGGATT
GCGACTCAATCCTTGAGCATTTTTCTGCAAAAAAGCAACGTTATCATTGA
TTATCTGATGTTCATTCTTGCACTGTCAGAATCGAGCCCTGATTGCGATA
TAAAACTGGAGCACATTTTCGCTAAAGCCACCATTTATGAAATATGTCAT
CTACTTGATTGTCAATCTAAATACGATATGTCCATCACTGACACAAAGGT
CTGTTTTTCCCCTCGATCTTCCATCCTTTGTAACGATGGAGTTGAAGCTG
ATGTTGTTCATGTCCCCGGAGGGGATGGTGGCCGCAAGTCGTGGTTTACA
CGACGGGCATATATAAACGAGTGCACTGCGCCATACAAAGACTATATATT
CGCGCGTCTGTATTAA
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protein sequence of rna2531

>rna2531-protein ID=rna2531-protein|Name=rna2531|organism=Nannochloropsis gaditana|type=polypeptide|length=471bp
MKRKHAETLCTKPLRVLVLGDGNLSYSLGLAERLPGAQLLATSFDNPQEL
HRKYTESHATVTRLEALGARVRVIYGVDALNILETLRRVQMEEGKRADSF
REPPHDSVSNCARTADGHPLEVFDHVIFNHPHTGWEDIHRHRALLAHFLE
SAKAVLACSTTQGTEGGQVHVTLAGDQCKRWKLLQTAARLGFKLRHICDF
YRQFGPDHPPVDIKRHQSGKSFRIRGLPSFTYSFTLEEVSYYSATANAAY
SFPPSPSLWRHAYDPEEHEAAMTIRPGNKGVAGGSKGAPITDVVKSIKCD
TCEKCFRGPKDLRKHMGDAHDKPPVQAEGLPCEACGRDFRDEAALGQHQR
AKHSGRFQDLKPDWSTAALNVSETDESNAQPSLHFQGVEKEAYEASRADR
EEDMVLCTVCDYYVASRTAEHLADLRPPERPIYNCRSCDRTFRELRALKQ
HANACWPFKNGHGIERGNKEK
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mRNA from alignment at CM002459.1:596451..597953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2531 ID=rna2531|Name=rna2531|organism=Nannochloropsis gaditana|type=mRNA|length=1503bp|location=Sequence derived from alignment at CM002459.1:596451..597953- (Nannochloropsis gaditana)
ATGAAGCGCAAGCATGCAGAGACCCTTTGTACGAAGCCACTGCGAGTACT
TGTCCTTGGGGATGGCAACCTCTCGTACAGCCTCGGTTTGGCGGAACGCT
TACCAGGGGCGCAGCTCTTGGCCACCTCGTTCGACAATCCTCAAGAATTG
CACAGAAAATACACAGAGAGCCACGCCACTGTGACGCGTTTAGAGGCATT
GGGCGCACGTGTTCGTGTTATATATGGAGTGGACGCCTTGAACATCCTAG
AAACCCTGAGGCGTGTCCAAATGGAAGAAGGAAAGAGGGCTGACTCCTTC
CGAGAGCCTCCACATGACTCTGTCTCCAATTGTGCGCGCACTGCAGACGG
TCATCCGCTTGAGGTGTTCGACCATGTGATTTTCAACCATCCGCACACGG
GCTGGGAAGATATACACCGGCACAGGGCTCTTCTCGCCCACTTCTTGGAG
AGCGCAAAAGCCGTTTTGGCGTGCTCGACCACCCAAGGCACGGAGGGAGG
TCAAGTCCACGTAACCTTAGCAGGGGATCAATGCAAACGTTGGAAGCTTC
TTCAGACAGCAGCGCGACTGGGCTTCAAGCTCCGACACATCTGTGACTTC
TATCGACAATTCGGGCCTGACCATCCCCCGGTAGACATCAAGCGACATCA
GAGTGGCAAGTCTTTTCGCATCCGGGGGCTGCCGAGTTTTACGTACTCAT
TCACCTTAGAAGAAGTCAGTTATTATTCAGCAACTGCGAATGCGGCCTAT
TCATTCCCCCCGTCTCCCTCCCTCTGGAGGCACGCCTACGATCCGGAGGA
GCACGAAGCCGCCATGACCATAAGACCAGGGAATAAGGGGGTTGCGGGCG
GCTCGAAAGGCGCCCCCATCACCGATGTGGTTAAATCAATCAAATGCGAT
ACTTGTGAGAAATGTTTTCGTGGGCCCAAAGACCTCCGCAAGCACATGGG
CGATGCTCACGATAAGCCCCCCGTGCAGGTGATGAGGGCGTATGGCCTGG
GAATGTAGGCTTGAACAAAGTATGAAAACAACTGTTACTTATCGGATATT
TTCACCTTCATCCAGGCGGAGGGCCTACCGTGCGAGGCCTGCGGACGGGA
TTTCAGAGATGAGGCCGCCTTGGGCCAGCACCAGCGCGCAAAACACTCGG
GCAGGTTCCAAGATCTGAAGCCAGATTGGTCCACTGCTGCATTAAATGTC
TCCGAAACAGACGAGTCAAATGCTCAACCTTCTTTGCACTTCCAAGGAGT
GGAAAAAGAGGCATACGAGGCAAGTCGGGCAGACAGAGAGGAGGATATGG
TACTTTGTACTGTGTGCGACTATTACGTCGCCTCCCGTACCGCGGAGCAC
TTAGCCGATCTCAGGCCCCCAGAACGCCCCATTTATAATTGTCGCAGCTG
TGACCGCACATTTCGAGAATTACGGGCCCTCAAGCAGCACGCCAATGCAT
GCTGGCCGTTCAAGAATGGGCATGGGATAGAGCGTGGTAACAAAGAAAAA
TAG
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Coding sequence (CDS) from alignment at CM002459.1:596451..597953-

>rna2531 ID=rna2531|Name=rna2531|organism=Nannochloropsis gaditana|type=CDS|length=2832bp|location=Sequence derived from alignment at CM002459.1:596451..597953- (Nannochloropsis gaditana)
GCGGAGGGCCTACCGTGCGAGGCCTGCGGACGGGATTTCAGAGATGAGGC
CGCCTTGGGCCAGCACCAGCGCGCAAAACACTCGGGCAGGTTCCAAGATC
TGAAGCCAGATTGGTCCACTGCTGCATTAAATGTCTCCGAAACAGACGAG
TCAAATGCTCAACCTTCTTTGCACTTCCAAGGAGTGGAAAAAGAGGCATA
CGAGGCAAGTCGGGCAGACAGAGAGGAGGATATGGTACTTTGTACTGTGT
GCGACTATTACGTCGCCTCCCGTACCGCGGAGCACTTAGCCGATCTCAGG
CCCCCAGAACGCCCCATTTATAATTGTCGCAGCTGTGACCGCACATTTCG
AGAATTACGGGCCCTCAAGCAGCACGCCAATGCATGCTGGCCGTTCAAGA
ATGGGCATGGGATAGAGCGTGGTAACAAAGAAAAATAGATGAAGCGCAAG
CATGCAGAGACCCTTTGTACGAAGCCACTGCGAGTACTTGTCCTTGGGGA
TGGCAACCTCTCGTACAGCCTCGGTTTGGCGGAACGCTTACCAGGGGCGC
AGCTCTTGGCCACCTCGTTCGACAATCCTCAAGAATTGCACAGAAAATAC
ACAGAGAGCCACGCCACTGTGACGCGTTTAGAGGCATTGGGCGCACGTGT
TCGTGTTATATATGGAGTGGACGCCTTGAACATCCTAGAAACCCTGAGGC
GTGTCCAAATGGAAGAAGGAAAGAGGGCTGACTCCTTCCGAGAGCCTCCA
CATGACTCTGTCTCCAATTGTGCGCGCACTGCAGACGGTCATCCGCTTGA
GGTGTTCGACCATGTGATTTTCAACCATCCGCACACGGGCTGGGAAGATA
TACACCGGCACAGGGCTCTTCTCGCCCACTTCTTGGAGAGCGCAAAAGCC
GTTTTGGCGTGCTCGACCACCCAAGGCACGGAGGGAGGTCAAGTCCACGT
AACCTTAGCAGGGGATCAATGCAAACGTTGGAAGCTTCTTCAGACAGCAG
CGCGACTGGGCTTCAAGCTCCGACACATCTGTGACTTCTATCGACAATTC
GGGCCTGACCATCCCCCGGTAGACATCAAGCGACATCAGAGTGGCAAGTC
TTTTCGCATCCGGGGGCTGCCGAGTTTTACGTACTCATTCACCTTAGAAG
AAGTCAGTTATTATTCAGCAACTGCGAATGCGGCCTATTCATTCCCCCCG
TCTCCCTCCCTCTGGAGGCACGCCTACGATCCGGAGGAGCACGAAGCCGC
CATGACCATAAGACCAGGGAATAAGGGGGTTGCGGGCGGCTCGAAAGGCG
CCCCCATCACCGATGTGGTTAAATCAATCAAATGCGATACTTGTGAGAAA
TGTTTTCGTGGGCCCAAAGACCTCCGCAAGCACATGGGCGATGCTCACGA
TAAGCCCCCCGTGCAGGCGGAGGGCCTACCGTGCGAGGCCTGCGGACGGG
ATTTCAGAGATGAGGCCGCCTTGGGCCAGCACCAGCGCGCAAAACACTCG
GGCAGGTTCCAAGATCTGAAGCCAGATTGGTCCACTGCTGCATTAAATGT
CTCCGAAACAGACGAGTCAAATGCTCAACCTTCTTTGCACTTCCAAGGAG
TGGAAAAAGAGGCATACGAGGCAAGTCGGGCAGACAGAGAGGAGGATATG
GTACTTTGTACTGTGTGCGACTATTACGTCGCCTCCCGTACCGCGGAGCA
CTTAGCCGATCTCAGGCCCCCAGAACGCCCCATTTATAATTGTCGCAGCT
GTGACCGCACATTTCGAGAATTACGGGCCCTCAAGCAGCACGCCAATGCA
TGCTGGCCGTTCAAGAATGGGCATGGGATAGAGCGTGGTAACAAAGAAAA
ATAGATGAAGCGCAAGCATGCAGAGACCCTTTGTACGAAGCCACTGCGAG
TACTTGTCCTTGGGGATGGCAACCTCTCGTACAGCCTCGGTTTGGCGGAA
CGCTTACCAGGGGCGCAGCTCTTGGCCACCTCGTTCGACAATCCTCAAGA
ATTGCACAGAAAATACACAGAGAGCCACGCCACTGTGACGCGTTTAGAGG
CATTGGGCGCACGTGTTCGTGTTATATATGGAGTGGACGCCTTGAACATC
CTAGAAACCCTGAGGCGTGTCCAAATGGAAGAAGGAAAGAGGGCTGACTC
CTTCCGAGAGCCTCCACATGACTCTGTCTCCAATTGTGCGCGCACTGCAG
ACGGTCATCCGCTTGAGGTGTTCGACCATGTGATTTTCAACCATCCGCAC
ACGGGCTGGGAAGATATACACCGGCACAGGGCTCTTCTCGCCCACTTCTT
GGAGAGCGCAAAAGCCGTTTTGGCGTGCTCGACCACCCAAGGCACGGAGG
GAGGTCAAGTCCACGTAACCTTAGCAGGGGATCAATGCAAACGTTGGAAG
CTTCTTCAGACAGCAGCGCGACTGGGCTTCAAGCTCCGACACATCTGTGA
CTTCTATCGACAATTCGGGCCTGACCATCCCCCGGTAGACATCAAGCGAC
ATCAGAGTGGCAAGTCTTTTCGCATCCGGGGGCTGCCGAGTTTTACGTAC
TCATTCACCTTAGAAGAAGTCAGTTATTATTCAGCAACTGCGAATGCGGC
CTATTCATTCCCCCCGTCTCCCTCCCTCTGGAGGCACGCCTACGATCCGG
AGGAGCACGAAGCCGCCATGACCATAAGACCAGGGAATAAGGGGGTTGCG
GGCGGCTCGAAAGGCGCCCCCATCACCGATGTGGTTAAATCAATCAAATG
CGATACTTGTGAGAAATGTTTTCGTGGGCCCAAAGACCTCCGCAAGCACA
TGGGCGATGCTCACGATAAGCCCCCCGTGCAG
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Synonyms
Publications