rna2513, rna2513 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2513
Unique Name	rna2513
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	633
Alignment location	CM002459.1:554760..556009 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100004g156.9156.mrna
Orig protein id	gnl\|cribi\|Naga_100004g156.9156
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:554760..556009 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g156	gene2402	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2513	rna2513-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28225.1	cds2505	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:554760..556009-
coding sequence from alignment at CM002459.1:554760..556009-

mRNA sequence

>rna2513 ID=rna2513|Name=rna2513|organism=Nannochloropsis gaditana|type=mRNA|length=633bp
ATGCACCCCCGTCATCCGTCTCAAAACAGCCTTCAGCTCCCCTCGAGTAA
CACCTTCCACTCCTATTCATTGCATCCCTCGGTGTATCCGCGGGCCCAAA
GCGTGCAACATGGGGTCCCACTTCATCCATCGTCCTTACCGAGAGGCGCA
TTGCCGCCTCAAGGAGCTCAGGCCGTGCTTCCCAATAACAACAACCCGCA
AACATTGATGCACTATGAACACCTTAGGCCCGTGAAGACTTGGGTCGACT
CTCGACGAGACTCCCCATGGGGCAAAGGGTCACAGCGAGGTGGAGGAAGA
GCTGGCAAGGCTGATGCAAGCAGTGTTTATGGTGGTAATAAGGGAGGTCG
GGGCAGAAAACGGCCCTACGACGGACGAGACAAGCTCAATCACCGCACTC
AAGCGGGTGAAGGCGATAAGCAGTGCGTGGGATATTATAGAGCAAGCTTT
TTGGAAGATCCATGGCTGCCTTTGATGCGCGAAGAGGTGCGTAGGCGAGA
CCGGGGCCTCCCTGCGCAGGGCCTGTCTGAAGCCTTTGACCCTGGGGATG
AGCACAAGAGAGGGGAGAGTAAACAAAGTGTTGAGGCCGGAAGCGTAAAA
GATGAGGCAGAAATCGAGCTGGAAAATCTGTGA

protein sequence of rna2513

>rna2513-protein ID=rna2513-protein|Name=rna2513|organism=Nannochloropsis gaditana|type=polypeptide|length=335bp
MDSAPANELLILGLRGNENTCSGSMEHPMRAYLTNILAHTMFDLETNAEE
AKRTVSDGGEVIMWTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLA
ERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVG
VADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAE
LRDRKGLQRVRECIEATTWRHISTRSRDVIGPRNKAQTEKESGRKHLNEG
ALKTLSSAGTRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLH
AVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE

mRNA from alignment at CM002459.1:554760..556009-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2513 ID=rna2513|Name=rna2513|organism=Nannochloropsis gaditana|type=mRNA|length=1250bp|location=Sequence derived from alignment at CM002459.1:554760..556009- (Nannochloropsis gaditana)
ATGGACAGTGCGCCTGCGAATGAGTTGCTCATCCTTGGCCTTCGAGGTAA
TGAGAACACATGCTCAGGTAGCATGGAGCACCCTATGAGAGCGTACCTCA
CCAATATTTTGGCCCATACAATGTTTGATTTGGAGACCAATGCAGAAGAG
GCGAAGCGAACAGGTTAGTCATTCTCGCATGTTCATCCCCTAGCATAAGA
CCTGGTGGCATTGAACTTTAAAGCTCACATATTTTACAATGCTTGTTTCG
ATGTCTTAGTTTCTGACGGTGGAGAAGTTATCATGTGGACGCTTGACACC
AAATACTATACGGCTGATCTTGCTGTACGAGTGACGGACATGGATGCCCC
CCCCGCTGTTGGGGATAGAGGAGGTCAGGATCCCCTCCTGCTTGCTGAGC
GGGGAGCGGCCTCGCAAGGAGTCATTTTAGTTTTCCTGGACGATCTGCTG
CCTGGGGAGGATACCAGCTCGAATTTAGCCAAGATAGAACCATGGTAAAG
TTGTCTATGGCCAAATAAGCGCGGCTCCTGCTCAATTGACTCACGTACTG
GTCACTCACGAGCAGGCTGCGTGCCGCCCATTCCCGAGAGGATCTGGAAC
TCCGTTTAGTCGTAGGCGTGGCCGATGGCAACCCATGCTCGCGCGGATTG
GCCGAAAAGGAGGAAGGAGAGGAATTGCAACACAAACGCGCTGTTTGGTA
AGGTTTGTCTTACGGGAATATCAGTCTGAACACGGTATTGCTGTTCTTTT
CTAAACCTTTTTTTTGTGGCAGGTGCCTTGAGTACGGCTTTGAGTACGTG
CACCTTGACGACGCGCAGCAAATGCTAGTAGAGCAGGCAGAATTGCGAGA
CAGGAAAGGATTGCAACGAGTTCGCGAGTGCATAGAGGCCACCACCTGGC
GACACATAAGCACACGCTCCAGAGACGTCATTGGACCGCGCAATAAGGCG
CAGACAGAGAAGGAATCGGGGCGTAAGCACCTAAATGAAGGGGCGTTAAA
GACCCTTTCCTCAGCCGGAACACGACAGGGAATGGAAAGGGCATTACTGC
GTGGACTTGTAGATGCTAAAGTGGCGGGATATAAAGCCGGCTCCGACGAA
GAGGACGAGACGGCTGTGGACGAGTTGTTTGACATGCTCCATGCCGTCCA
GAGCAGTGCGGGACAATACAGCGACACTGATCGACGGGCACGGGCAGCTG
ACGTGGCACTAAGGTTTGCTCAATCTCTAGGGATTTTTGATGACGAGTGA

Coding sequence (CDS) from alignment at CM002459.1:554760..556009-

>rna2513 ID=rna2513|Name=rna2513|organism=Nannochloropsis gaditana|type=CDS|length=4032bp|location=Sequence derived from alignment at CM002459.1:554760..556009- (Nannochloropsis gaditana)
GTGCCTTGAGTACGGCTTTGAGTACGTGCACCTTGACGACGCGCAGCAAA
TGCTAGTAGAGCAGGCAGAATTGCGAGACAGGAAAGGATTGCAACGAGTT
CGCGAGTGCATAGAGGCCACCACCTGGCGACACATAAGCACACGCTCCAG
AGACGTCATTGGACCGCGCAATAAGGCGCAGACAGAGAAGGAATCGGGGC
GTAAGCACCTAAATGAAGGGGCGTTAAAGACCCTTTCCTCAGCCGGAACA
CGACAGGGAATGGAAAGGGCATTACTGCGTGGACTTGTAGATGCTAAAGT
GGCGGGATATAAAGCCGGCTCCGACGAAGAGGACGAGACGGCTGTGGACG
AGTTGTTTGACATGCTCCATGCCGTCCAGAGCAGTGCGGGACAATACAGC
GACACTGATCGACGGGCACGGGCAGCTGACGTGGCACTAAGGTTTGCTCA
ATCTCTAGGGATTTTTGATGACGAGTGAGCTGCGTGCCGCCCATTCCCGA
GAGGATCTGGAACTCCGTTTAGTCGTAGGCGTGGCCGATGGCAACCCATG
CTCGCGCGGATTGGCCGAAAAGGAGGAAGGAGAGGAATTGCAACACAAAC
GCGCTGTTTGTTTCTGACGGTGGAGAAGTTATCATGTGGACGCTTGACAC
CAAATACTATACGGCTGATCTTGCTGTACGAGTGACGGACATGGATGCCC
CCCCCGCTGTTGGGGATAGAGGAGGTCAGGATCCCCTCCTGCTTGCTGAG
CGGGGAGCGGCCTCGCAAGGAGTCATTTTAGTTTTCCTGGACGATCTGCT
GCCTGGGGAGGATACCAGCTCGAATTTAGCCAAGATAGAACCATGATGGA
CAGTGCGCCTGCGAATGAGTTGCTCATCCTTGGCCTTCGAGGTAATGAGA
ACACATGCTCAGGTAGCATGGAGCACCCTATGAGAGCGTACCTCACCAAT
ATTTTGGCCCATACAATGTTTGATTTGGAGACCAATGCAGAAGAGGCGAA
GCGAACAGGTGCCTTGAGTACGGCTTTGAGTACGTGCACCTTGACGACGC
GCAGCAAATGCTAGTAGAGCAGGCAGAATTGCGAGACAGGAAAGGATTGC
AACGAGTTCGCGAGTGCATAGAGGCCACCACCTGGCGACACATAAGCACA
CGCTCCAGAGACGTCATTGGACCGCGCAATAAGGCGCAGACAGAGAAGGA
ATCGGGGCGTAAGCACCTAAATGAAGGGGCGTTAAAGACCCTTTCCTCAG
CCGGAACACGACAGGGAATGGAAAGGGCATTACTGCGTGGACTTGTAGAT
GCTAAAGTGGCGGGATATAAAGCCGGCTCCGACGAAGAGGACGAGACGGC
TGTGGACGAGTTGTTTGACATGCTCCATGCCGTCCAGAGCAGTGCGGGAC
AATACAGCGACACTGATCGACGGGCACGGGCAGCTGACGTGGCACTAAGG
TTTGCTCAATCTCTAGGGATTTTTGATGACGAGTGAGCTGCGTGCCGCCC
ATTCCCGAGAGGATCTGGAACTCCGTTTAGTCGTAGGCGTGGCCGATGGC
AACCCATGCTCGCGCGGATTGGCCGAAAAGGAGGAAGGAGAGGAATTGCA
ACACAAACGCGCTGTTTGTTTCTGACGGTGGAGAAGTTATCATGTGGACG
CTTGACACCAAATACTATACGGCTGATCTTGCTGTACGAGTGACGGACAT
GGATGCCCCCCCCGCTGTTGGGGATAGAGGAGGTCAGGATCCCCTCCTGC
TTGCTGAGCGGGGAGCGGCCTCGCAAGGAGTCATTTTAGTTTTCCTGGAC
GATCTGCTGCCTGGGGAGGATACCAGCTCGAATTTAGCCAAGATAGAACC
ATGATGGACAGTGCGCCTGCGAATGAGTTGCTCATCCTTGGCCTTCGAGG
TAATGAGAACACATGCTCAGGTAGCATGGAGCACCCTATGAGAGCGTACC
TCACCAATATTTTGGCCCATACAATGTTTGATTTGGAGACCAATGCAGAA
GAGGCGAAGCGAACAGGTGCCTTGAGTACGGCTTTGAGTACGTGCACCTT
GACGACGCGCAGCAAATGCTAGTAGAGCAGGCAGAATTGCGAGACAGGAA
AGGATTGCAACGAGTTCGCGAGTGCATAGAGGCCACCACCTGGCGACACA
TAAGCACACGCTCCAGAGACGTCATTGGACCGCGCAATAAGGCGCAGACA
GAGAAGGAATCGGGGCGTAAGCACCTAAATGAAGGGGCGTTAAAGACCCT
TTCCTCAGCCGGAACACGACAGGGAATGGAAAGGGCATTACTGCGTGGAC
TTGTAGATGCTAAAGTGGCGGGATATAAAGCCGGCTCCGACGAAGAGGAC
GAGACGGCTGTGGACGAGTTGTTTGACATGCTCCATGCCGTCCAGAGCAG
TGCGGGACAATACAGCGACACTGATCGACGGGCACGGGCAGCTGACGTGG
CACTAAGGTTTGCTCAATCTCTAGGGATTTTTGATGACGAGTGAGCTGCG
TGCCGCCCATTCCCGAGAGGATCTGGAACTCCGTTTAGTCGTAGGCGTGG
CCGATGGCAACCCATGCTCGCGCGGATTGGCCGAAAAGGAGGAAGGAGAG
GAATTGCAACACAAACGCGCTGTTTGTTTCTGACGGTGGAGAAGTTATCA
TGTGGACGCTTGACACCAAATACTATACGGCTGATCTTGCTGTACGAGTG
ACGGACATGGATGCCCCCCCCGCTGTTGGGGATAGAGGAGGTCAGGATCC
CCTCCTGCTTGCTGAGCGGGGAGCGGCCTCGCAAGGAGTCATTTTAGTTT
TCCTGGACGATCTGCTGCCTGGGGAGGATACCAGCTCGAATTTAGCCAAG
ATAGAACCATGATGGACAGTGCGCCTGCGAATGAGTTGCTCATCCTTGGC
CTTCGAGGTAATGAGAACACATGCTCAGGTAGCATGGAGCACCCTATGAG
AGCGTACCTCACCAATATTTTGGCCCATACAATGTTTGATTTGGAGACCA
ATGCAGAAGAGGCGAAGCGAACAGGTGCCTTGAGTACGGCTTTGAGTACG
TGCACCTTGACGACGCGCAGCAAATGCTAGTAGAGCAGGCAGAATTGCGA
GACAGGAAAGGATTGCAACGAGTTCGCGAGTGCATAGAGGCCACCACCTG
GCGACACATAAGCACACGCTCCAGAGACGTCATTGGACCGCGCAATAAGG
CGCAGACAGAGAAGGAATCGGGGCGTAAGCACCTAAATGAAGGGGCGTTA
AAGACCCTTTCCTCAGCCGGAACACGACAGGGAATGGAAAGGGCATTACT
GCGTGGACTTGTAGATGCTAAAGTGGCGGGATATAAAGCCGGCTCCGACG
AAGAGGACGAGACGGCTGTGGACGAGTTGTTTGACATGCTCCATGCCGTC
CAGAGCAGTGCGGGACAATACAGCGACACTGATCGACGGGCACGGGCAGC
TGACGTGGCACTAAGGTTTGCTCAATCTCTAGGGATTTTTGATGACGAGT
GAGCTGCGTGCCGCCCATTCCCGAGAGGATCTGGAACTCCGTTTAGTCGT
AGGCGTGGCCGATGGCAACCCATGCTCGCGCGGATTGGCCGAAAAGGAGG
AAGGAGAGGAATTGCAACACAAACGCGCTGTTTGTTTCTGACGGTGGAGA
AGTTATCATGTGGACGCTTGACACCAAATACTATACGGCTGATCTTGCTG
TACGAGTGACGGACATGGATGCCCCCCCCGCTGTTGGGGATAGAGGAGGT
CAGGATCCCCTCCTGCTTGCTGAGCGGGGAGCGGCCTCGCAAGGAGTCAT
TTTAGTTTTCCTGGACGATCTGCTGCCTGGGGAGGATACCAGCTCGAATT
TAGCCAAGATAGAACCATGATGGACAGTGCGCCTGCGAATGAGTTGCTCA
TCCTTGGCCTTCGAGGTAATGAGAACACATGCTCAGGTAGCATGGAGCAC
CCTATGAGAGCGTACCTCACCAATATTTTGGCCCATACAATGTTTGATTT
GGAGACCAATGCAGAAGAGGCGAAGCGAACAG

Synonyms

Publications