EWM28225.1, cds2505 (CDS) Nannochloropsis gaditana

Overview
NameEWM28225.1
Unique Namecds2505
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:555847..556009 -
Alignment locationCM002459.1:555516..555750 -
Alignment locationCM002459.1:555313..555444 -
Alignment locationCM002459.1:554760..555237 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28225.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g156.9156.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:555847..556009 -
CM002459.1supercontigCM002459.1:555516..555750 -
CM002459.1supercontigCM002459.1:555313..555444 -
CM002459.1supercontigCM002459.1:554760..555237 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|585110570|gb|EWM28225.1| (hypothetical protein Naga_100004g156 [Nannochloropsis gaditana])

HSP 1 Score: 684.871 bits (1766), Expect = 0.000e+0
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0
Query:    1 MDSAPANELLILGLRGNENTCSGSMEHPMRAYLTNILAHTMFDLETNAEEAKRTVSDGGEVIMWTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIGPRNKAQTEKESGRKHLNEGALKTLSSAGTRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE 335
            MDSAPANELLILGLRGNENTCSGSMEHPMRAYLTNILAHTMFDLETNAEEAKRTVSDGGEVIMWTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIGPRNKAQTEKESGRKHLNEGALKTLSSAGTRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE
Sbjct:    1 MDSAPANELLILGLRGNENTCSGSMEHPMRAYLTNILAHTMFDLETNAEEAKRTVSDGGEVIMWTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIGPRNKAQTEKESGRKHLNEGALKTLSSAGTRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE 335          
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|198431645|ref|XP_002122251.1| (PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Ciona intestinalis])

HSP 1 Score: 72.0182 bits (175), Expect = 7.537e-11
Identity = 73/275 (26.55%), Postives = 128/275 (46.55%), Query Frame = 0
Query:   58 GGEVIMWTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAAS-QGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRA-VWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIGPRNKAQTEKESGRKHLNEGALKTLSSAGTRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLG 330
             GE   W+L  KYY AD+ V+V              +   L++E  A   + VIL+F       + TS +L  ++ WL    + E  +++L V       CS G   +E+GE ++ +   +WC++ GFE V LD     ++E  +  +  G+ R+R  I A TW H+  +  +    + + +TEK+   K + E A+ +LS       ME       +DA ++   +  D++D+   + LF  +H  + SA    +  R+  A  V   F +++G
Sbjct:   34 NGETYTWSLSNKYYMADVEVQVV-------------KSQNLISEDFARKLEAVILLF-----DAKKTSDSLTAMKSWLPFIQTWE-CDIKLAVC---ARCCSVG---EEDGEFIKREEVQLWCIDNGFELVELDP----VLEDYDEYEDYGITRIRRAIGAHTWTHMKLKENEPKKIQGEPKTEKKD--KDVAEPAVNSLS-------MEEQ-----IDAMLSN--SNDDDQDDADFEALFQKMHLFKQSAMSMPENSRKEYAEKVVSAFWKAIG 263          
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|224001386|ref|XP_002290365.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973787|gb|EED92117.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 69.3218 bits (168), Expect = 1.279e-9
Identity = 64/210 (30.48%), Postives = 104/210 (49.52%), Query Frame = 0
Query:  145 LRLVVGVADG-NPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTW-RHISTRSRDVIGPRNKA--QTEKESGR--KHLNEGALKTLSS-AGTRQGMERA-LLRGL---VDAKVAGYKAGSDEEDETAVDELFDMLHAVQ-----SSAGQYSDTDRRARAADVALRFA---QSLGIFDDE 335
            LRL VGV+ G +P S G    ++ EE   +R +WCL+ G+EYV  D  ++ + +  E RD++G  R+ E I +  W  H+  +   V  P  K   ++E E G+  K +   ++++LSS   TR+    A L++G+    ++     K    +  E A  EL  ++   +     S +   +D +RR RA D A+R       LG  DDE
Sbjct:  108 LRLCVGVSFGPSPLSDG---SKKSEEEYSRRVLWCLDRGYEYVEADLTEEGMAKGHEDRDKEGYARIVEAISSCMWSSHVMKKRSVVAAPVTKKVDKSEDEVGKESKEIGGNSIQSLSSDHDTREAAAMATLMKGVEEESESTSDESKLLEQKRQEIAFHELEHVMTVAKRIREASQSESMTDEERRQRAGDTAMRLMGLLDKLGFDDDE 314          
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|1160129800|ref|XP_020390386.1| (alpha- and gamma-adaptin-binding protein p34 isoform X2 [Rhincodon typus])

HSP 1 Score: 62.7734 bits (151), Expect = 1.350e-7
Identity = 64/283 (22.61%), Postives = 108/283 (38.16%), Query Frame = 0
Query:   64 WTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRS---------RDVIGPRNKAQTEKESGRKHLNEGALKTLSSAGTRQGMERALLRGLVDA-------KVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLG 330
            WT+D KYYTA + + V               +  +L +  A S    L++ D       T + L ++  WL          L LV      N  SR  A++            WC++YGFE V L + + +  E+ +  +  G+ R+ + + A  W ++  ++           + G     QTE E+  ++ N   L   S A  R G+        +D        ++A    G  E D    + LF+ L  ++  A       R+  A  VA  F  ++G
Sbjct:   31 WTIDNKYYTATVHLCVV-------------PNKFILTKEIADSVEAFLIYFDST-----TKTGLDEVSTWLPLTQEWTPEVLILVCDRVSDNGVSRQTAQQ------------WCIKYGFELVEL-NPEDLPDEEDDFPESTGVTRIIQALNANVWSNVEMKTDRPQDFGILSSLTGVLENCQTEAETQVEYHNLAELDAESLAEDRDGVAALQPDSFMDPMLHLDIQELATLTTG--EVDCENFERLFEKLKEMKDKAATLPHEQRKLHAEKVAKAFWMAIG 280          
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|1079711862|ref|XP_018536937.1| (PREDICTED: alpha- and gamma-adaptin-binding protein p34 isoform X2 [Lates calcarifer])

HSP 1 Score: 63.1586 bits (152), Expect = 1.391e-7
Identity = 69/287 (24.04%), Postives = 116/287 (40.42%), Query Frame = 0
Query:   64 WTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTR----------SRDVIGPRNKAQTEKESGRKHL-------NEGALKTLSSAGTRQGMERALLRGLVDAKV---AGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLG 330
            WT++ KYYTAD+ + V      P+           ++   A S    + + D  +  ED    L K++PW+      EDL   +++ V D   C +G+         +H+   WCL + FE V L + Q +  E  +  +  G++R+ + + A  W  +  +          S  V    N  +T ++     L       NE A +T SS  T    E A++  + D  +   A   AG  + D    + LF  L  ++  A       R+  A  VA  F  ++G
Sbjct:   54 WTINNKYYTADVRLCVV-----PST--------FQMSSEIAQSMQAFIAYFDSTV--ED---GLEKLQPWISVV---EDLAPEVLILVCD-RVCEKGVT--------RHEAQQWCLAHAFELVEL-NPQDLPDEDDDFPESTGVKRIVQALNANVWSSVEMKDGHNQGFGLMSSLVASRHNNPRTCQDPPSSSLPVEGTLVNEEANRTDSSTNT-DTQEDAVVDAMTDLDIQELANLTAGDADVDN--FERLFTKLKEMKDKASSLPHEQRKVHAEKVAKAFWMAIG 306          
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|617415917|ref|XP_007556901.1| (PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Poecilia formosa] >gi|961937831|ref|XP_014865677.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Poecilia mexicana])

HSP 1 Score: 62.3882 bits (150), Expect = 2.246e-7
Identity = 71/291 (24.40%), Postives = 115/291 (39.52%), Query Frame = 0
Query:   64 WTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIG--------------PRNKAQTEKESGR---KHLNEGALKTLSSAG--TRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE 335
            WT++ KYYTAD+ + V      P+          + AE   + Q  I  F   +  G      L K+ PW+      EDL   +++ V D   C  G+         +H+   WCL + FE V L + Q++  E  +  +  G++R+ + + A  W  +  +     G              PR+       S      H NE A  T +SA   T++G     +  L   ++A   AG  + D    + LF  L  ++  A       R+  A  VA  F  ++G  +DE
Sbjct:   54 WTINNKYYTADVQLCVV-----PSTYK-------MSAEIAQSMQAFIAYFDSKVKDG------LEKLNPWIPVV---EDLSPEVLILVCD-RVCEDGVT--------RHEAQQWCLSHAFELVEL-NPQELPDEDDDFPESTGVKRIIQALNANVWSSVEMKDGHNQGFGLMSSLVASRHNNPRHSQDPPSSSLPAEGTHTNEEANHTDNSANSDTQEGSVVDAMTDLDIQELANLTAGDADADN--FERLFTKLKEMKDKASSLPHEQRKVHAEKVAKAFWMAIGGEEDE 311          
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|1079711860|ref|XP_018536930.1| (PREDICTED: alpha- and gamma-adaptin-binding protein p34 isoform X1 [Lates calcarifer])

HSP 1 Score: 62.003 bits (149), Expect = 2.791e-7
Identity = 68/288 (23.61%), Postives = 117/288 (40.62%), Query Frame = 0
Query:   64 WTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTR----------SRDVIGPRNKAQTEKESGRKH--------LNEGALKTLSSAGTRQGMERALLRGLVDAKV---AGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLG 330
            WT++ KYYTAD+ + V      P+           ++   A S    + + D  +  ED    L K++PW+      EDL   +++ V D   C +G+         +H+   WCL + FE V L + Q +  E  +  +  G++R+ + + A  W  +  +          S  V    N  +T ++  +          +NE A +T SS  T    E A++  + D  +   A   AG  + D    + LF  L  ++  A       R+  A  VA  F  ++G
Sbjct:   54 WTINNKYYTADVRLCVV-----PST--------FQMSSEIAQSMQAFIAYFDSTV--ED---GLEKLQPWISVV---EDLAPEVLILVCD-RVCEKGVT--------RHEAQQWCLAHAFELVEL-NPQDLPDEDDDFPESTGVKRIVQALNANVWSSVEMKDGHNQGFGLMSSLVASRHNNPRTCQDPPQSSSLPVEGTLVNEEANRTDSSTNT-DTQEDAVVDAMTDLDIQELANLTAGDADVDN--FERLFTKLKEMKDKASSLPHEQRKVHAEKVAKAFWMAIG 307          
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|658855549|ref|XP_008410418.1| (PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Poecilia reticulata])

HSP 1 Score: 62.003 bits (149), Expect = 2.828e-7
Identity = 71/291 (24.40%), Postives = 115/291 (39.52%), Query Frame = 0
Query:   64 WTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIG--------------PRNKAQTEKESGR---KHLNEGALKTLSSAG--TRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE 335
            WT++ KYYTAD+ + V      P+          + AE   + Q  I  F   +  G      L K+ PW+      EDL   +++ V D   C  G+         +H+   WCL + FE V L + Q++  E  +  +  G++R+ + + A  W  +  +     G              PR+       S      H NE A  T +SA   T++G     +  L   ++A   AG  + D    + LF  L  ++  A       R+  A  VA  F  ++G  +DE
Sbjct:   54 WTINNKYYTADVQLCVV-----PSTYK-------MSAEIAQSMQAFIAYFDSKVKDG------LEKLNPWIPVV---EDLSPEVLILVCD-RVCEDGVT--------RHEAQQWCLSHAFELVEL-NPQELPDEDDDFPESTGVKRIIQALNANVWSSVEMKDGHNQGFGLMSSLVASRHNNPRHSQDPPSSSLPAEGTHTNEEANHTDNSANSDTQEGSVVDAMTDLDIQELANLTAGDADADN--FERLFTKLKEMKDKASSLPHEQRKVHAEKVAKAFWMAIGGEEDE 311          
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|597770843|ref|XP_007249213.1| (PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Astyanax mexicanus])

HSP 1 Score: 62.003 bits (149), Expect = 3.021e-7
Identity = 67/289 (23.18%), Postives = 110/289 (38.06%), Query Frame = 0
Query:   64 WTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIG--------------PRNKAQTEKESGRKHLNEGALKTLSSAGTRQGMERALLRGLVDAKV---AGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE 335
            W ++ KYYTAD+++ V      P+  +         AE   + Q  I+ F         T   L  I PWL      EDL   +++ V D   C  G+         +H    WCL + FE V L + Q++  E  +  +  G++R+ + + A  W  +  +     G              PR   +T+  S     N    KT  S    + +  +++  + D  +   A   AG  + D    + LF  L  ++  A       R+  A  VA  F  ++G   DE
Sbjct:   54 WKINNKYYTADVSLCVV-----PSTFNMN-------AEVAQSMQAFIVYF------DSKTKDGLNGISPWLSVV---EDLAPEVLILVCD-RVCETGVD--------RHDAQQWCLSHAFELVEL-NPQELPDEDDDFPESTGVKRIVQALNANVWSSVEMKDEHSQGFGLMSSLVASRHNNPRPMPETQAPSNTTDENTEGQKT-ESCHQSENVVDSIVDPMTDMDIQELANLTAG--DADVENFERLFTKLKEMKDKASSLPHEQRKVHAEKVAKAFWMAIGGDQDE 308          
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|961937368|ref|XP_014912679.1| (PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Poecilia latipinna])

HSP 1 Score: 61.6178 bits (148), Expect = 3.902e-7
Identity = 71/291 (24.40%), Postives = 115/291 (39.52%), Query Frame = 0
Query:   64 WTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIG--------------PRNKAQTEKESGR---KHLNEGALKTLSSAG--TRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE 335
            WT++ KYYTAD+ + V      P+          + AE   + Q  I  F   +  G      L K+ PW+      EDL   +++ V D   C  G+         +H+   WCL + FE V L + Q++  E  +  +  G++R+ + + A  W  +  +     G              PR+       S      H NE A  T +SA   T++G     +  L   ++A   AG  + D    + LF  L  ++  A       R+  A  VA  F  ++G  +DE
Sbjct:   54 WTINNKYYTADVQLCVV-----PSTYK-------MSAEIAQSMQAFIAYFDSRVKDG------LEKLNPWIPVV---EDLSPEVLILVCD-RVCEDGVT--------RHEAQQWCLSHAFELVEL-NPQELPDEDDDFPESTGVKRIIQALNANVWSSVEMKDGHNQGFGLLSSLVASRHNNPRHSQDPPSSSLPAEGTHTNEEANHTDNSANSDTQEGSVVDAMTDLDIQELANLTAGDADADN--FERLFTKLKEMKDKASSLPHEQRKVHAEKVAKAFWMAIGGEEDE 311          
The following BLAST results are available for this feature:
BLAST of EWM28225.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110570|gb|EWM28225.1|0.000e+0100.00hypothetical protein Naga_100004g156 [Nannochlorop... [more]
gi|198431645|ref|XP_002122251.1|7.537e-1126.55PREDICTED: alpha- and gamma-adaptin-binding protei... [more]
gi|224001386|ref|XP_002290365.1|1.279e-930.48predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1160129800|ref|XP_020390386.1|1.350e-722.61alpha- and gamma-adaptin-binding protein p34 isofo... [more]
gi|1079711862|ref|XP_018536937.1|1.391e-724.04PREDICTED: alpha- and gamma-adaptin-binding protei... [more]
gi|617415917|ref|XP_007556901.1|2.246e-724.40PREDICTED: alpha- and gamma-adaptin-binding protei... [more]
gi|1079711860|ref|XP_018536930.1|2.791e-723.61PREDICTED: alpha- and gamma-adaptin-binding protei... [more]
gi|658855549|ref|XP_008410418.1|2.828e-724.40PREDICTED: alpha- and gamma-adaptin-binding protei... [more]
gi|597770843|ref|XP_007249213.1|3.021e-723.18PREDICTED: alpha- and gamma-adaptin-binding protei... [more]
gi|961937368|ref|XP_014912679.1|3.902e-724.40PREDICTED: alpha- and gamma-adaptin-binding protei... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2513rna2513Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications