EWM28225.1, cds2505 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|585110570|gb|EWM28225.1| (hypothetical protein Naga_100004g156 [Nannochloropsis gaditana]) HSP 1 Score: 684.871 bits (1766), Expect = 0.000e+0 Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0
Query: 1 MDSAPANELLILGLRGNENTCSGSMEHPMRAYLTNILAHTMFDLETNAEEAKRTVSDGGEVIMWTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIGPRNKAQTEKESGRKHLNEGALKTLSSAGTRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE 335
MDSAPANELLILGLRGNENTCSGSMEHPMRAYLTNILAHTMFDLETNAEEAKRTVSDGGEVIMWTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIGPRNKAQTEKESGRKHLNEGALKTLSSAGTRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE
Sbjct: 1 MDSAPANELLILGLRGNENTCSGSMEHPMRAYLTNILAHTMFDLETNAEEAKRTVSDGGEVIMWTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIGPRNKAQTEKESGRKHLNEGALKTLSSAGTRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE 335
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|198431645|ref|XP_002122251.1| (PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Ciona intestinalis]) HSP 1 Score: 72.0182 bits (175), Expect = 7.537e-11 Identity = 73/275 (26.55%), Postives = 128/275 (46.55%), Query Frame = 0
Query: 58 GGEVIMWTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAAS-QGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRA-VWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIGPRNKAQTEKESGRKHLNEGALKTLSSAGTRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLG 330
GE W+L KYY AD+ V+V + L++E A + VIL+F + TS +L ++ WL + E +++L V CS G +E+GE ++ + +WC++ GFE V LD ++E + + G+ R+R I A TW H+ + + + + +TEK+ K + E A+ +LS ME +DA ++ + D++D+ + LF +H + SA + R+ A V F +++G
Sbjct: 34 NGETYTWSLSNKYYMADVEVQVV-------------KSQNLISEDFARKLEAVILLF-----DAKKTSDSLTAMKSWLPFIQTWE-CDIKLAVC---ARCCSVG---EEDGEFIKREEVQLWCIDNGFELVELDP----VLEDYDEYEDYGITRIRRAIGAHTWTHMKLKENEPKKIQGEPKTEKKD--KDVAEPAVNSLS-------MEEQ-----IDAMLSN--SNDDDQDDADFEALFQKMHLFKQSAMSMPENSRKEYAEKVVSAFWKAIG 263
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|224001386|ref|XP_002290365.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973787|gb|EED92117.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 69.3218 bits (168), Expect = 1.279e-9 Identity = 64/210 (30.48%), Postives = 104/210 (49.52%), Query Frame = 0
Query: 145 LRLVVGVADG-NPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTW-RHISTRSRDVIGPRNKA--QTEKESGR--KHLNEGALKTLSS-AGTRQGMERA-LLRGL---VDAKVAGYKAGSDEEDETAVDELFDMLHAVQ-----SSAGQYSDTDRRARAADVALRFA---QSLGIFDDE 335
LRL VGV+ G +P S G ++ EE +R +WCL+ G+EYV D ++ + + E RD++G R+ E I + W H+ + V P K ++E E G+ K + ++++LSS TR+ A L++G+ ++ K + E A EL ++ + S + +D +RR RA D A+R LG DDE
Sbjct: 108 LRLCVGVSFGPSPLSDG---SKKSEEEYSRRVLWCLDRGYEYVEADLTEEGMAKGHEDRDKEGYARIVEAISSCMWSSHVMKKRSVVAAPVTKKVDKSEDEVGKESKEIGGNSIQSLSSDHDTREAAAMATLMKGVEEESESTSDESKLLEQKRQEIAFHELEHVMTVAKRIREASQSESMTDEERRQRAGDTAMRLMGLLDKLGFDDDE 314
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|1160129800|ref|XP_020390386.1| (alpha- and gamma-adaptin-binding protein p34 isoform X2 [Rhincodon typus]) HSP 1 Score: 62.7734 bits (151), Expect = 1.350e-7 Identity = 64/283 (22.61%), Postives = 108/283 (38.16%), Query Frame = 0
Query: 64 WTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRS---------RDVIGPRNKAQTEKESGRKHLNEGALKTLSSAGTRQGMERALLRGLVDA-------KVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLG 330
WT+D KYYTA + + V + +L + A S L++ D T + L ++ WL L LV N SR A++ WC++YGFE V L + + + E+ + + G+ R+ + + A W ++ ++ + G QTE E+ ++ N L S A R G+ +D ++A G E D + LF+ L ++ A R+ A VA F ++G
Sbjct: 31 WTIDNKYYTATVHLCVV-------------PNKFILTKEIADSVEAFLIYFDST-----TKTGLDEVSTWLPLTQEWTPEVLILVCDRVSDNGVSRQTAQQ------------WCIKYGFELVEL-NPEDLPDEEDDFPESTGVTRIIQALNANVWSNVEMKTDRPQDFGILSSLTGVLENCQTEAETQVEYHNLAELDAESLAEDRDGVAALQPDSFMDPMLHLDIQELATLTTG--EVDCENFERLFEKLKEMKDKAATLPHEQRKLHAEKVAKAFWMAIG 280
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|1079711862|ref|XP_018536937.1| (PREDICTED: alpha- and gamma-adaptin-binding protein p34 isoform X2 [Lates calcarifer]) HSP 1 Score: 63.1586 bits (152), Expect = 1.391e-7 Identity = 69/287 (24.04%), Postives = 116/287 (40.42%), Query Frame = 0
Query: 64 WTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTR----------SRDVIGPRNKAQTEKESGRKHL-------NEGALKTLSSAGTRQGMERALLRGLVDAKV---AGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLG 330
WT++ KYYTAD+ + V P+ ++ A S + + D + ED L K++PW+ EDL +++ V D C +G+ +H+ WCL + FE V L + Q + E + + G++R+ + + A W + + S V N +T ++ L NE A +T SS T E A++ + D + A AG + D + LF L ++ A R+ A VA F ++G
Sbjct: 54 WTINNKYYTADVRLCVV-----PST--------FQMSSEIAQSMQAFIAYFDSTV--ED---GLEKLQPWISVV---EDLAPEVLILVCD-RVCEKGVT--------RHEAQQWCLAHAFELVEL-NPQDLPDEDDDFPESTGVKRIVQALNANVWSSVEMKDGHNQGFGLMSSLVASRHNNPRTCQDPPSSSLPVEGTLVNEEANRTDSSTNT-DTQEDAVVDAMTDLDIQELANLTAGDADVDN--FERLFTKLKEMKDKASSLPHEQRKVHAEKVAKAFWMAIG 306
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|617415917|ref|XP_007556901.1| (PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Poecilia formosa] >gi|961937831|ref|XP_014865677.1| PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Poecilia mexicana]) HSP 1 Score: 62.3882 bits (150), Expect = 2.246e-7 Identity = 71/291 (24.40%), Postives = 115/291 (39.52%), Query Frame = 0
Query: 64 WTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIG--------------PRNKAQTEKESGR---KHLNEGALKTLSSAG--TRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE 335
WT++ KYYTAD+ + V P+ + AE + Q I F + G L K+ PW+ EDL +++ V D C G+ +H+ WCL + FE V L + Q++ E + + G++R+ + + A W + + G PR+ S H NE A T +SA T++G + L ++A AG + D + LF L ++ A R+ A VA F ++G +DE
Sbjct: 54 WTINNKYYTADVQLCVV-----PSTYK-------MSAEIAQSMQAFIAYFDSKVKDG------LEKLNPWIPVV---EDLSPEVLILVCD-RVCEDGVT--------RHEAQQWCLSHAFELVEL-NPQELPDEDDDFPESTGVKRIIQALNANVWSSVEMKDGHNQGFGLMSSLVASRHNNPRHSQDPPSSSLPAEGTHTNEEANHTDNSANSDTQEGSVVDAMTDLDIQELANLTAGDADADN--FERLFTKLKEMKDKASSLPHEQRKVHAEKVAKAFWMAIGGEEDE 311
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|1079711860|ref|XP_018536930.1| (PREDICTED: alpha- and gamma-adaptin-binding protein p34 isoform X1 [Lates calcarifer]) HSP 1 Score: 62.003 bits (149), Expect = 2.791e-7 Identity = 68/288 (23.61%), Postives = 117/288 (40.62%), Query Frame = 0
Query: 64 WTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTR----------SRDVIGPRNKAQTEKESGRKH--------LNEGALKTLSSAGTRQGMERALLRGLVDAKV---AGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLG 330
WT++ KYYTAD+ + V P+ ++ A S + + D + ED L K++PW+ EDL +++ V D C +G+ +H+ WCL + FE V L + Q + E + + G++R+ + + A W + + S V N +T ++ + +NE A +T SS T E A++ + D + A AG + D + LF L ++ A R+ A VA F ++G
Sbjct: 54 WTINNKYYTADVRLCVV-----PST--------FQMSSEIAQSMQAFIAYFDSTV--ED---GLEKLQPWISVV---EDLAPEVLILVCD-RVCEKGVT--------RHEAQQWCLAHAFELVEL-NPQDLPDEDDDFPESTGVKRIVQALNANVWSSVEMKDGHNQGFGLMSSLVASRHNNPRTCQDPPQSSSLPVEGTLVNEEANRTDSSTNT-DTQEDAVVDAMTDLDIQELANLTAGDADVDN--FERLFTKLKEMKDKASSLPHEQRKVHAEKVAKAFWMAIG 307
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|658855549|ref|XP_008410418.1| (PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Poecilia reticulata]) HSP 1 Score: 62.003 bits (149), Expect = 2.828e-7 Identity = 71/291 (24.40%), Postives = 115/291 (39.52%), Query Frame = 0
Query: 64 WTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIG--------------PRNKAQTEKESGR---KHLNEGALKTLSSAG--TRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE 335
WT++ KYYTAD+ + V P+ + AE + Q I F + G L K+ PW+ EDL +++ V D C G+ +H+ WCL + FE V L + Q++ E + + G++R+ + + A W + + G PR+ S H NE A T +SA T++G + L ++A AG + D + LF L ++ A R+ A VA F ++G +DE
Sbjct: 54 WTINNKYYTADVQLCVV-----PSTYK-------MSAEIAQSMQAFIAYFDSKVKDG------LEKLNPWIPVV---EDLSPEVLILVCD-RVCEDGVT--------RHEAQQWCLSHAFELVEL-NPQELPDEDDDFPESTGVKRIIQALNANVWSSVEMKDGHNQGFGLMSSLVASRHNNPRHSQDPPSSSLPAEGTHTNEEANHTDNSANSDTQEGSVVDAMTDLDIQELANLTAGDADADN--FERLFTKLKEMKDKASSLPHEQRKVHAEKVAKAFWMAIGGEEDE 311
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|597770843|ref|XP_007249213.1| (PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Astyanax mexicanus]) HSP 1 Score: 62.003 bits (149), Expect = 3.021e-7 Identity = 67/289 (23.18%), Postives = 110/289 (38.06%), Query Frame = 0
Query: 64 WTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIG--------------PRNKAQTEKESGRKHLNEGALKTLSSAGTRQGMERALLRGLVDAKV---AGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE 335
W ++ KYYTAD+++ V P+ + AE + Q I+ F T L I PWL EDL +++ V D C G+ +H WCL + FE V L + Q++ E + + G++R+ + + A W + + G PR +T+ S N KT S + + +++ + D + A AG + D + LF L ++ A R+ A VA F ++G DE
Sbjct: 54 WKINNKYYTADVSLCVV-----PSTFNMN-------AEVAQSMQAFIVYF------DSKTKDGLNGISPWLSVV---EDLAPEVLILVCD-RVCETGVD--------RHDAQQWCLSHAFELVEL-NPQELPDEDDDFPESTGVKRIVQALNANVWSSVEMKDEHSQGFGLMSSLVASRHNNPRPMPETQAPSNTTDENTEGQKT-ESCHQSENVVDSIVDPMTDMDIQELANLTAG--DADVENFERLFTKLKEMKDKASSLPHEQRKVHAEKVAKAFWMAIGGDQDE 308
BLAST of EWM28225.1 vs. NCBI_GenBank
Match: gi|961937368|ref|XP_014912679.1| (PREDICTED: alpha- and gamma-adaptin-binding protein p34 [Poecilia latipinna]) HSP 1 Score: 61.6178 bits (148), Expect = 3.902e-7 Identity = 71/291 (24.40%), Postives = 115/291 (39.52%), Query Frame = 0
Query: 64 WTLDTKYYTADLAVRVTDMDAPPAVGDRGGQDPLLLAERGAASQGVILVFLDDLLPGEDTSSNLAKIEPWLRAAHSREDLELRLVVGVADGNPCSRGLAEKEEGEELQHKRAVWCLEYGFEYVHLDDAQQMLVEQAELRDRKGLQRVRECIEATTWRHISTRSRDVIG--------------PRNKAQTEKESGR---KHLNEGALKTLSSAG--TRQGMERALLRGLVDAKVAGYKAGSDEEDETAVDELFDMLHAVQSSAGQYSDTDRRARAADVALRFAQSLGIFDDE 335
WT++ KYYTAD+ + V P+ + AE + Q I F + G L K+ PW+ EDL +++ V D C G+ +H+ WCL + FE V L + Q++ E + + G++R+ + + A W + + G PR+ S H NE A T +SA T++G + L ++A AG + D + LF L ++ A R+ A VA F ++G +DE
Sbjct: 54 WTINNKYYTADVQLCVV-----PSTYK-------MSAEIAQSMQAFIAYFDSRVKDG------LEKLNPWIPVV---EDLSPEVLILVCD-RVCEDGVT--------RHEAQQWCLSHAFELVEL-NPQELPDEDDDFPESTGVKRIIQALNANVWSSVEMKDGHNQGFGLLSSLVASRHNNPRHSQDPPSSSLPAEGTHTNEEANHTDNSANSDTQEGSVVDAMTDLDIQELANLTAGDADADN--FERLFTKLKEMKDKASSLPHEQRKVHAEKVAKAFWMAIGGEEDE 311 The following BLAST results are available for this feature:
BLAST of EWM28225.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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