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Properties
| Property Name | Value |
|---|
| Product | high mobility group protein b3 |
| Orig transcript id | gnl|cribi|Naga_100004g148.9165.mrna |
| Orig protein id | gnl|cribi|Naga_100004g148.9165 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:536919..538648 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2504 ID=rna2504|Name=rna2504|organism=Nannochloropsis gaditana|type=mRNA|length=1995bp
ATGTTAACCGAGGATGATATGGAAGTGAATGACAGTGCAGACGAGGAGGA
TGGCTTCTCCAAGGATTTTGACGTAATTGAAGATAATCTGATGGTGCTTA
TTGATGCTCGGCCCCCCATGCTGGTGGAAAATGTCCAAGGCACGGTGCCT
TTGGTGACCGCTTTGGGTATTATTCATCACGTGCTAAAACGCAAAATTAT
GATCAACCAGCGGGACCATGTTGGAATCCTCCTCTTTGGAGCAGAAGCAG
TGGACGAAAAGGGAGAAATTGTAGGCTCTGGAAATGCAAAGTTTTCGGAC
ATGTCCCGCATGAGTCAGGTTTGGGGGAATCAGGTCCATGAGTTACAGAC
ATTAGGACAGCCAACCGCCAAGCGGATCAAGCAAATCGAACGGCTCTGCC
ATGAAGACACCAATATCATGAACGGGCTATGTCTCAAGCACGCACAAAAG
CTTCCAGGCTCTTCTACGTCGGCGGCGCTGCGGGACGGTCTTAGAGCATG
TCTTCGGATGCTCGAGGGGCAGTCCAGAAAGGAATTGGACAGTCGGCGGA
TCTGGCTGTTCACCAATGAAGATGATCCCTCCCAGGTGAACGATCCCAGC
CAGGTGATAAAGGACGCTCGGGAAGGAGGCGTCGAGATGTGGGTATGGCA
CTTCCCTGCGCAAGATGGTCGCGAATTTAACAGAAATAAATTTTACGAGC
CCTTGCTAGCTGCACCAACTCGATTTGTCCAGGACGGGTATAAAATAGCC
GATGAAAAAGATCCAGGGTATTGTACAAAGATGATAGATGCAGGATCTGG
AGATGTGAACTCGCTCCTGCTAGGAGCCCGGACACCTCTATTCAAGAAAC
GCCGTTACGTGCGTACGAAATTGCACATATCTGTGGATCCACCCATTTCT
CTCGATGTGGCATTCTACAAGACCATTCAACGATGTCGTAAGCCGATGCC
CGTAAAACTAGCAGCTGTATCAAACAGGAGACTGGCCACCTCCACCAAGT
GGATGTGTGAGGACCTAGTGCAGTACGTGGACCCCGAGCTTGACGTAGCA
TGTGGCTTGGAGTTTGGAAAAGGCGGCGTCACTATTCCGCTACACAGCGC
TGCATACGAAATGAAGCAGCGCGTTTGCCAAAGAGATCCGGGCCTGCATC
TTTTGGCCTTTCTTCCGGCAGAAGAGTTGGCTTGGGAGCTAAACGTGACC
AGCAGTACCCTGATTTATCCAGAGGAGATGGCTCTCAAAGGTTGTACGCG
AGCCTTCTCTGCTATCCGAAAAGCCATGCTCCAGCAACATAAGATGGCTT
TAGTCCGGCTCCACATCAATGCGGTGTCGTATCCACGTCTGGCTGTGCTC
CTTGCACCACCTGCCACGCCCGGTCTGGAGCTGATAGTTCTACCTTTTCT
TGACGATTTGCGCGCCATAGAAAGCCCACATTTGGAGAGTTTACCTGCGC
TACCAAGCATGGATCAGAAAGAGGCTGCGAAAAGTGTGATTTCACGTCTG
GCGATGAGGTGGGAGGAATACTACCAAGGCTATAGCAATCCCGGTTTGCA
AAAATTTTATGCCGGCTTGCAAGCCCTGGCCCTAGAGCAATCAGAGGTAG
ACTGGAATGAGTCGGCAGACGACCGAACATGGCCGGATGAGAAAGAGTTG
CTGGGACGGACGGGTGAGGCTATGCGTGGTTTGTGGGAATCAAGCCGCGA
TCCGGACAAGGTCCTGAACGGCGGGTCAAGTGGAAAACGTAAGTCAACGG
TCGCGGGGGTGGATAGGCTTCTTTCTTTGAAAAAAGAAAAAAGGGAGGTG
AAAGACTCAGGTAAGGCAGAAAAGGGCCATCATGATAGTGTAAAAAGTGA
GTTTGAAGCATTTGAGGGAGCTCAAACAAGAGAAGGACTTTCCAAACTGA
CAGTAAGGAAGCTCAAGGACCTTTGCCAGGAATTGAAATTGCACGTCTCC
GGCAGGAAAGACGACCTCATCGATCGCCTTCTTTCACAAGGGTAG back to topprotein sequence of rna2504 >rna2504-protein ID=rna2504-protein|Name=rna2504|organism=Nannochloropsis gaditana|type=polypeptide|length=224bp
MSEGGDRSGHGLDFQKLALCFAKLFQKQAAFAAQHAAIFAKLAAGDEATL
EAVLNLPEEKCTEETNGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLR
AEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKA
NQSGSGGGGGATNAVEGETAKPSTSAKIEKGEDEGEDHRDNTESDSESEK
EMKKAKKKKHKKHKKHRDKAREEA back to topmRNA from alignment at CM002459.1:536919..538648+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2504 ID=rna2504|Name=rna2504|organism=Nannochloropsis gaditana|type=mRNA|length=1730bp|location=Sequence derived from alignment at CM002459.1:536919..538648+ (Nannochloropsis gaditana)
ACAAAGAGGCCGCGCCGTGCCGATGGACCAGGGCCCGTAAAGGCGGCCAC
TGCCGGGTCGTGGGGTCGTAGATACcccggcgggggcgggaaagtCAAGA
CCTGAGGCTTGAAGATATTCGAGAAGCGCCGCGCAGGAGCACACATTGGC
TCGAACCACAATTTTATTTGCACGCACATGCACTTAGTAAGATGAACTCA
AGACTTTGGGTCCCTCTGTTCACGGGCCTGGGCATTTTGGCCTCTGTCGC
TCAGTACCACAACAAGAAGATCATACATCATAAGCGCGCCAAGCTGTAAC
ACCCGCCATAATACCCTCACCACCCACTTCCCCTCAAAAAAGGACTCGGT
TCTAATCAACCGACGCTGTGTCATGTCAGAAGGTGGCGATCGGAGCGGCC
ATGGTCTAGACTTTCAAAAGCTTGCGCTATGTTTCGCAAAGCTATTTCAG
AAACAGGCCGCCTTTGCTGCTCAGCATGCCGCCATCTTTGCTAAGTTAGC
TGCAGGAGATGAAGCGACGCTTGAGGCCGTGCTCAACTTACCCGAAGAAA
AGTGTACTGAGGAAACgaatggaggaaaaaagcGCAGGGCCGCGAAGCGA
GATCCAGACTTGCCCAAGCGGCCTAAAAGCGGGTATCAATTATATGTATG
CGAGAAAACTCCAACTTTGCGGGCGGAGCAACCGGAAGCTAAGATGACAG
AGCTTATGACAGTGCTGGCCAATGATTGGAAAAATttgaatgaggaggag
aaggagaagtaCCAAAAATTAGCCGTGAAAGAGAAGACCTTATATCAGGA
CAAACTTGCCGATTACAAGGCCAACCAAAGcgggagcggcggcggcggag
gggccaCAAACGCCGTCGAAGGGGAAACCGCCAAACCATCTACATCAGCA
AAAAttgagaaaggggaggatgagggggaaGATCACCGTGATAATACGGA
GTCGGATTCCGAGTCtgaaaaggaaatgaaaaaggccaaaaagaagaagc
acaAAAAACACAAGAAGCATCGCGACaaagcgcgggaggaggcctaACGA
CCGTCAACATAGAGATGTTCCCATCTGTAGCAAGAAGCATATGATTTATG
ATGATGCAGAGCACTTTATTACGGTGAGGGTAGTCTCAAGAAACTTGATA
CTAATATTGCAGCACTTCCGATTAAATAAACAAGTATTGATAAAAGCAAT
CCTGGTGTGTACGAATATTTCCGCTTGGTGGGGAAAGGTTCAAACCGACG
TGTAGCTTTTGATGACTACATCCTATCGGAAGGTGCGGCTACGTTATCAC
CCGCATATCAAATTCTTTGCATGGTTCATTCTTGCTCGTCCTGCTACAAA
ATTGGCACAGCGAGGTTTGCATCAGCACTAATTATGTGTAGCTTCCGAGA
CACCCTCCCGATATGTCAGCTGCACGTTCAGCCCTGGCTATCAAGTGTGC
ATTTGTAGATTAATGTTTACAAAAAAGCCATGAAGCGTTCTGCGTCATTG
CCACCTTGACGCGAACGTGGGTTCTTCGATACTTTCTCTCGTCACATGAC
ACCGGGAGGTGTAAAAAAGTTTCTCTCTCAGAATCCTTGTTCACTTGTCG
TCTCGGCGTCCACTTTGACTTACTGGTTGTGTCCATCAACCAGTCACCGC
GCACTAGACCCCGATCAGAGTTCTAAGaccttttcttccttcttcggcGT
GTATCGGGGCCGGGCAGGCAGCAGGACCTA back to topCoding sequence (CDS) from alignment at CM002459.1:536919..538648+ >rna2504 ID=rna2504|Name=rna2504|organism=Nannochloropsis gaditana|type=CDS|length=675bp|location=Sequence derived from alignment at CM002459.1:536919..538648+ (Nannochloropsis gaditana)
ATGTCAGAAGGTGGCGATCGGAGCGGCCATGGTCTAGACTTTCAAAAGCT
TGCGCTATGTTTCGCAAAGCTATTTCAGAAACAGGCCGCCTTTGCTGCTC
AGCATGCCGCCATCTTTGCTAAGTTAGCTGCAGGAGATGAAGCGACGCTT
GAGGCCGTGCTCAACTTACCCGAAGAAAAGTGTACTGAGGAAACgaatgg
aggaaaaaagcGCAGGGCCGCGAAGCGAGATCCAGACTTGCCCAAGCGGC
CTAAAAGCGGGTATCAATTATATGTATGCGAGAAAACTCCAACTTTGCGG
GCGGAGCAACCGGAAGCTAAGATGACAGAGCTTATGACAGTGCTGGCCAA
TGATTGGAAAAATttgaatgaggaggagaaggagaagtaCCAAAAATTAG
CCGTGAAAGAGAAGACCTTATATCAGGACAAACTTGCCGATTACAAGGCC
AACCAAAGcgggagcggcggcggcggaggggccaCAAACGCCGTCGAAGG
GGAAACCGCCAAACCATCTACATCAGCAAAAAttgagaaaggggaggatg
agggggaaGATCACCGTGATAATACGGAGTCGGATTCCGAGTCtgaaaag
gaaatgaaaaaggccaaaaagaagaagcacaAAAAACACAAGAAGCATCG
CGACaaagcgcgggaggaggcctaA back to top
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