EWM28234.1, cds2496 (CDS) Nannochloropsis gaditana

Overview
NameEWM28234.1
Unique Namecds2496
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:537291..537965 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28234.1
Producthigh mobility group protein b3
Orig transcript idgnl|cribi|Naga_100004g148.9165.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:537291..537965 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
Homology
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|585110579|gb|EWM28234.1| (high mobility group protein b3 [Nannochloropsis gaditana])

HSP 1 Score: 453.751 bits (1166), Expect = 2.110e-161
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query:    1 MSEGGDRSGHGLDFQKLALCFAKLFQKQAAFAAQHAAIFAKLAAGDEATLEAVLNLPEEKCTEETNGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGATNAVEGETAKPSTSAKIEKGEDEGEDHRDNTESDSESEKEMKKAKKKKHKKHKKHRDKAREEA 224
            MSEGGDRSGHGLDFQKLALCFAKLFQKQAAFAAQHAAIFAKLAAGDEATLEAVLNLPEEKCTEETNGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGATNAVEGETAKPSTSAKIEKGEDEGEDHRDNTESDSESEKEMKKAKKKKHKKHKKHRDKAREEA
Sbjct:    1 MSEGGDRSGHGLDFQKLALCFAKLFQKQAAFAAQHAAIFAKLAAGDEATLEAVLNLPEEKCTEETNGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGATNAVEGETAKPSTSAKIEKGEDEGEDHRDNTESDSESEKEMKKAKKKKHKKHKKHRDKAREEA 224          
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|1025269315|ref|XP_016374124.1| (PREDICTED: high mobility group protein B3-like [Sinocyclocheilus rhinocerous])

HSP 1 Score: 78.5666 bits (192), Expect = 2.303e-14
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 0
Query:   66 NGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGA 161
            N GKK R   +DP+ P+RP+SG+ L+  E+ P ++A+ P   + ++   L   W NL++ EK+ +Q  A K K  YQ  +ADYK    GSGG   A
Sbjct:   79 NPGKKSRKQMKDPNAPRRPQSGFFLFCAEQRPNIKAQNPSLGIGDVAKRLGEMWNNLSDSEKQPFQSKANKLKDKYQKDMADYKGKAKGSGGASSA 174          
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|1024971133|ref|XP_016306986.1| (PREDICTED: high mobility group protein B3-like [Sinocyclocheilus anshuiensis])

HSP 1 Score: 78.5666 bits (192), Expect = 2.349e-14
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 0
Query:   66 NGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGA 161
            N GKK R   +DP+ P+RP+SG+ L+  E+ P ++A+ P   + ++   L   W NL++ EK+ +Q  A K K  YQ  +ADYK    GSGG   A
Sbjct:   79 NPGKKSRKQMKDPNAPRRPQSGFFLFCAEQRPNIKAQNPSLGIGDVAKRLGEMWNNLSDSEKQPFQSKANKLKDKYQKDMADYKGKAKGSGGASSA 174          
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|1020408994|ref|XP_016123094.1| (PREDICTED: high mobility group protein B3-like [Sinocyclocheilus grahami])

HSP 1 Score: 78.5666 bits (192), Expect = 2.595e-14
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 0
Query:   66 NGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGA 161
            N GKK R   +DP+ P+RP+SG+ L+  E+ P ++A+ P   + ++   L   W NL++ EK+ +Q  A K K  YQ  +ADYK    GSGG   A
Sbjct:   79 NPGKKSRKQIKDPNAPRRPQSGFFLFCAEQRPNIKAQHPSLGIGDVAKRLGEMWNNLSDSEKQPFQSKANKLKDKYQKDMADYKGKAKGSGGASSA 174          
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|260806967|ref|XP_002598355.1| (hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae] >gi|229283627|gb|EEN54367.1| hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae])

HSP 1 Score: 73.559 bits (179), Expect = 2.693e-12
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 0
Query:   67 GGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGATNAVEGETAKPSTSAK 177
            GG+++R  K+DP+ PKR  S + +Y  +  P +RA  P+ ++ E+  +L   WK +++ +K KY+K A  EK  YQ +LA+YK        GGGA+ A +G  AK +   K
Sbjct:   86 GGRRKRK-KKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQVGEIAKILGRQWKEISDSDKAKYEKKAQTEKARYQKELAEYKRT------GGGASPAKKGRPAKKAPPPK 189          
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|46394418|gb|AAS91553.1| (AmphiHMG1/2 [Branchiostoma belcheri tsingtauense])

HSP 1 Score: 72.7886 bits (177), Expect = 4.989e-12
Identity = 40/111 (36.04%), Postives = 66/111 (59.46%), Query Frame = 0
Query:   67 GGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGATNAVEGETAKPSTSAK 177
            GG+++R  K+DP+ PKR  S + +Y  +  P +RA  P+ ++ ++  +L   WK +++ +K KY+K A  EK  YQ +LA+YK +      GGGA+ A +G  AK +   K
Sbjct:   85 GGRRKRK-KKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQVGDIAKILGKQWKEISDSDKAKYEKKAQTEKARYQKELAEYKRS------GGGASPAKKGRPAKKAPPPK 188          
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|1042305204|ref|XP_017349019.1| (PREDICTED: high mobility group protein B3-like isoform X2 [Ictalurus punctatus])

HSP 1 Score: 70.0922 bits (170), Expect = 3.462e-11
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 0
Query:   66 NGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGG 159
            N GK+ R  K+DP  P+RP SG+ L+  E  P+++A+ P   + ++   L   W NL++ EK+ +   A K K  YQ  +ADYK+   G  GGG
Sbjct:   79 NPGKRGRKTKKDPSAPRRPPSGFFLFCSEHRPSIKAQNPSMGIGDVAKKLGEMWNNLSDSEKQPFLSKANKLKDKYQKDMADYKSK--GKVGGG 170          
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|1042305202|ref|XP_017349018.1| (PREDICTED: high mobility group protein B3-like isoform X1 [Ictalurus punctatus])

HSP 1 Score: 70.0922 bits (170), Expect = 6.072e-11
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 0
Query:   66 NGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGG 159
            N GK+ R  K+DP  P+RP SG+ L+  E  P+++A+ P   + ++   L   W NL++ EK+ +   A K K  YQ  +ADYK+   G  GGG
Sbjct:  113 NPGKRGRKTKKDPSAPRRPPSGFFLFCSEHRPSIKAQNPSMGIGDVAKKLGEMWNNLSDSEKQPFLSKANKLKDKYQKDMADYKSK--GKVGGG 204          
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|899143065|ref|NP_001297895.1| (high mobility group protein B3 [Esox lucius] >gi|1137499022|ref|XP_019903262.1| PREDICTED: high mobility group protein B3 isoform X1 [Esox lucius] >gi|225715078|gb|ACO13385.1| High mobility group protein B3 [Esox lucius])

HSP 1 Score: 67.781 bits (164), Expect = 2.480e-10
Identity = 38/113 (33.63%), Postives = 60/113 (53.10%), Query Frame = 0
Query:   58 EEKCTEETNGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGATNAVEGETA 170
            E + T     GK+ + AK+DP+ PKRP SG+ ++  E+ P ++A+ P   + ++   L   W NL +  K+ Y   A K K  Y+  +ADYK   +G  GG GA+   + E  
Sbjct:   72 ESEMTSYGPPGKRGKKAKKDPNAPKRPPSGFFVFCAEQRPKIKAQHPSFGIGDVAKKLGEAWNNLTDSSKQPYLAKANKLKEKYRKDVADYKRG-TGKPGGAGASKPKKAENV 183          
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|62955511|ref|NP_001017769.1| (high mobility group protein B3 [Danio rerio] >gi|62202670|gb|AAH93186.1| High-mobility group box 3b [Danio rerio] >gi|182890656|gb|AAI64996.1| Hmgb3b protein [Danio rerio])

HSP 1 Score: 63.1586 bits (152), Expect = 1.110e-8
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 0
Query:   66 NGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYK 149
            N GKK R  K+DP+ P+RP SG+ L+  E+ P ++A+ P   + ++   L   W NL++ EK+ +   A K K  YQ  +A Y+
Sbjct:   79 NPGKKGRKQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNPSLGIGDVAKKLGGMWNNLSDSEKQPFLSNADKLKDKYQKDMAFYR 162          
The following BLAST results are available for this feature:
BLAST of EWM28234.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110579|gb|EWM28234.1|2.110e-161100.00high mobility group protein b3 [Nannochloropsis ga... [more]
gi|1025269315|ref|XP_016374124.1|2.303e-1439.58PREDICTED: high mobility group protein B3-like [Si... [more]
gi|1024971133|ref|XP_016306986.1|2.349e-1439.58PREDICTED: high mobility group protein B3-like [Si... [more]
gi|1020408994|ref|XP_016123094.1|2.595e-1439.58PREDICTED: high mobility group protein B3-like [Si... [more]
gi|260806967|ref|XP_002598355.1|2.693e-1236.94hypothetical protein BRAFLDRAFT_57556 [Branchiosto... [more]
gi|46394418|gb|AAS91553.1|4.989e-1236.04AmphiHMG1/2 [Branchiostoma belcheri tsingtauense][more]
gi|1042305204|ref|XP_017349019.1|3.462e-1138.30PREDICTED: high mobility group protein B3-like iso... [more]
gi|1042305202|ref|XP_017349018.1|6.072e-1138.30PREDICTED: high mobility group protein B3-like iso... [more]
gi|899143065|ref|NP_001297895.1|2.480e-1033.63high mobility group protein B3 [Esox lucius] >gi|1... [more]
gi|62955511|ref|NP_001017769.1|1.110e-836.90high mobility group protein B3 [Danio rerio] >gi|6... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2504rna2504Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications