EWM28234.1, cds2496 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|585110579|gb|EWM28234.1| (high mobility group protein b3 [Nannochloropsis gaditana]) HSP 1 Score: 453.751 bits (1166), Expect = 2.110e-161 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 Query: 1 MSEGGDRSGHGLDFQKLALCFAKLFQKQAAFAAQHAAIFAKLAAGDEATLEAVLNLPEEKCTEETNGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGATNAVEGETAKPSTSAKIEKGEDEGEDHRDNTESDSESEKEMKKAKKKKHKKHKKHRDKAREEA 224 MSEGGDRSGHGLDFQKLALCFAKLFQKQAAFAAQHAAIFAKLAAGDEATLEAVLNLPEEKCTEETNGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGATNAVEGETAKPSTSAKIEKGEDEGEDHRDNTESDSESEKEMKKAKKKKHKKHKKHRDKAREEA Sbjct: 1 MSEGGDRSGHGLDFQKLALCFAKLFQKQAAFAAQHAAIFAKLAAGDEATLEAVLNLPEEKCTEETNGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGATNAVEGETAKPSTSAKIEKGEDEGEDHRDNTESDSESEKEMKKAKKKKHKKHKKHRDKAREEA 224
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|1025269315|ref|XP_016374124.1| (PREDICTED: high mobility group protein B3-like [Sinocyclocheilus rhinocerous]) HSP 1 Score: 78.5666 bits (192), Expect = 2.303e-14 Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 0 Query: 66 NGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGA 161 N GKK R +DP+ P+RP+SG+ L+ E+ P ++A+ P + ++ L W NL++ EK+ +Q A K K YQ +ADYK GSGG A Sbjct: 79 NPGKKSRKQMKDPNAPRRPQSGFFLFCAEQRPNIKAQNPSLGIGDVAKRLGEMWNNLSDSEKQPFQSKANKLKDKYQKDMADYKGKAKGSGGASSA 174
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|1024971133|ref|XP_016306986.1| (PREDICTED: high mobility group protein B3-like [Sinocyclocheilus anshuiensis]) HSP 1 Score: 78.5666 bits (192), Expect = 2.349e-14 Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 0 Query: 66 NGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGA 161 N GKK R +DP+ P+RP+SG+ L+ E+ P ++A+ P + ++ L W NL++ EK+ +Q A K K YQ +ADYK GSGG A Sbjct: 79 NPGKKSRKQMKDPNAPRRPQSGFFLFCAEQRPNIKAQNPSLGIGDVAKRLGEMWNNLSDSEKQPFQSKANKLKDKYQKDMADYKGKAKGSGGASSA 174
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|1020408994|ref|XP_016123094.1| (PREDICTED: high mobility group protein B3-like [Sinocyclocheilus grahami]) HSP 1 Score: 78.5666 bits (192), Expect = 2.595e-14 Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 0 Query: 66 NGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGA 161 N GKK R +DP+ P+RP+SG+ L+ E+ P ++A+ P + ++ L W NL++ EK+ +Q A K K YQ +ADYK GSGG A Sbjct: 79 NPGKKSRKQIKDPNAPRRPQSGFFLFCAEQRPNIKAQHPSLGIGDVAKRLGEMWNNLSDSEKQPFQSKANKLKDKYQKDMADYKGKAKGSGGASSA 174
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|260806967|ref|XP_002598355.1| (hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae] >gi|229283627|gb|EEN54367.1| hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae]) HSP 1 Score: 73.559 bits (179), Expect = 2.693e-12 Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 0 Query: 67 GGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGATNAVEGETAKPSTSAK 177 GG+++R K+DP+ PKR S + +Y + P +RA P+ ++ E+ +L WK +++ +K KY+K A EK YQ +LA+YK GGGA+ A +G AK + K Sbjct: 86 GGRRKRK-KKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQVGEIAKILGRQWKEISDSDKAKYEKKAQTEKARYQKELAEYKRT------GGGASPAKKGRPAKKAPPPK 189
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|46394418|gb|AAS91553.1| (AmphiHMG1/2 [Branchiostoma belcheri tsingtauense]) HSP 1 Score: 72.7886 bits (177), Expect = 4.989e-12 Identity = 40/111 (36.04%), Postives = 66/111 (59.46%), Query Frame = 0 Query: 67 GGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGATNAVEGETAKPSTSAK 177 GG+++R K+DP+ PKR S + +Y + P +RA P+ ++ ++ +L WK +++ +K KY+K A EK YQ +LA+YK + GGGA+ A +G AK + K Sbjct: 85 GGRRKRK-KKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQVGDIAKILGKQWKEISDSDKAKYEKKAQTEKARYQKELAEYKRS------GGGASPAKKGRPAKKAPPPK 188
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|1042305204|ref|XP_017349019.1| (PREDICTED: high mobility group protein B3-like isoform X2 [Ictalurus punctatus]) HSP 1 Score: 70.0922 bits (170), Expect = 3.462e-11 Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 0 Query: 66 NGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGG 159 N GK+ R K+DP P+RP SG+ L+ E P+++A+ P + ++ L W NL++ EK+ + A K K YQ +ADYK+ G GGG Sbjct: 79 NPGKRGRKTKKDPSAPRRPPSGFFLFCSEHRPSIKAQNPSMGIGDVAKKLGEMWNNLSDSEKQPFLSKANKLKDKYQKDMADYKSK--GKVGGG 170
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|1042305202|ref|XP_017349018.1| (PREDICTED: high mobility group protein B3-like isoform X1 [Ictalurus punctatus]) HSP 1 Score: 70.0922 bits (170), Expect = 6.072e-11 Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 0 Query: 66 NGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGG 159 N GK+ R K+DP P+RP SG+ L+ E P+++A+ P + ++ L W NL++ EK+ + A K K YQ +ADYK+ G GGG Sbjct: 113 NPGKRGRKTKKDPSAPRRPPSGFFLFCSEHRPSIKAQNPSMGIGDVAKKLGEMWNNLSDSEKQPFLSKANKLKDKYQKDMADYKSK--GKVGGG 204
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|899143065|ref|NP_001297895.1| (high mobility group protein B3 [Esox lucius] >gi|1137499022|ref|XP_019903262.1| PREDICTED: high mobility group protein B3 isoform X1 [Esox lucius] >gi|225715078|gb|ACO13385.1| High mobility group protein B3 [Esox lucius]) HSP 1 Score: 67.781 bits (164), Expect = 2.480e-10 Identity = 38/113 (33.63%), Postives = 60/113 (53.10%), Query Frame = 0 Query: 58 EEKCTEETNGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGATNAVEGETA 170 E + T GK+ + AK+DP+ PKRP SG+ ++ E+ P ++A+ P + ++ L W NL + K+ Y A K K Y+ +ADYK +G GG GA+ + E Sbjct: 72 ESEMTSYGPPGKRGKKAKKDPNAPKRPPSGFFVFCAEQRPKIKAQHPSFGIGDVAKKLGEAWNNLTDSSKQPYLAKANKLKEKYRKDVADYKRG-TGKPGGAGASKPKKAENV 183
BLAST of EWM28234.1 vs. NCBI_GenBank
Match: gi|62955511|ref|NP_001017769.1| (high mobility group protein B3 [Danio rerio] >gi|62202670|gb|AAH93186.1| High-mobility group box 3b [Danio rerio] >gi|182890656|gb|AAI64996.1| Hmgb3b protein [Danio rerio]) HSP 1 Score: 63.1586 bits (152), Expect = 1.110e-8 Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 0 Query: 66 NGGKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYK 149 N GKK R K+DP+ P+RP SG+ L+ E+ P ++A+ P + ++ L W NL++ EK+ + A K K YQ +A Y+ Sbjct: 79 NPGKKGRKQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNPSLGIGDVAKKLGGMWNNLSDSEKQPFLSNADKLKDKYQKDMAFYR 162 The following BLAST results are available for this feature:
BLAST of EWM28234.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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