|
|
Properties
| Property Name | Value |
|---|
| Product | x-ray repair cross-complementing protein 6 |
| Orig transcript id | gnl|cribi|Naga_100004g147.9123.mrna |
| Orig protein id | gnl|cribi|Naga_100004g147.9123 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:534420..536548 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2503 ID=rna2503|Name=rna2503|organism=Nannochloropsis gaditana|type=mRNA|length=3088bp
CCCGTGTTCCGTTGATCTCTTCCCCAGCGCATCTCCCTTCTTCTAGGCGC
TCCAGTGTGCTACGCGGTATACTTACGGCTTGTAGAGAGTCATTGTTGAA
TGATGGCATGCACGACATCATATGTATTGCTTCCTTAGCCACCGGGCAGG
AACACTGTCATGAAGTGTTGCTTTGATTGCCTTGAGTGAAATGCTTGATT
GAATGGTGTTATGCATGCAATGATGTACATGAACTCTTACCTAGTGGAGT
CGAAATGCCATTTCGAGTTTTTTAATGGTACCTGTTCTTGTCCCCTTCCT
CGGCCGTTGGTCTCAGGTTGAATATCCACTGCTCACCAGTCGCTCTCTTT
ACTGCACGAAACGTCTCCAAGAGTTAATGAATGTCAAAATGTGTTCGTGG
CTGTCGGCTGCGAGCTTGGTCGCCGCACTGTTTTTCTTGGAGTTGGAGCA
AGGAAGGGCATTTCTTTCAATGGGAAATCCGAAACTGGTCAGGAGCGGTA
CCTCGGCGTGTGGACGTGTGCGTGGTTTTGTGAGCGCGGTGCAATCCGTG
CCGCCTCCTAGTACTGCAAGCATAATTTCTTCTTCGTCATCTTTGTCGCA
AAAGGCTCCTTGGTCGCCTGATTCCTGGCGCAAATTTACTCCACGCCAAA
TGCCTGTTTATGACGATGAGGAGGAACTCGTGAAAGTAGAGCATGCACTG
GCTAAGTCGTCACCACTGGTGTTCGCAGGCGAGTGCCGTCAGCTTCACGA
ACACTTAGCCAAAGCTGCCATGGGTCAGAGCTTTTTGCTCATGGGTGGGG
ACTGCGCAGAAAGTTTTAAGGAATTTCATGTCGATACTATCAGAGATACC
TTTCGTGTGCTCCTGCAAATGGCACTGGTCCTGACGTTCGGCGGGTCCAT
GCCCGTCATCAAGGTGGGCCGAATGGCCGGCCAGTTCGCAAAGTAAGATG
AGGTTGTGGTGAGACCAACGATGTCCCATAGGAAAACATCTTCTTCTATA
AAGCATACAACAACATCGAGCCTAGTCCATCTTTGACAGTATTTGACTCA
TTCTCAATACCTGCCAGGCCTCGTTCGGAGCCGCAGGAGGAGGTGAACGG
CCTGAAATTGCCGAGCTACCGAGGAGACATAATCAACAGCGAGTCTTTTA
CTGAAGAAGCACGGCGCAACAATCCCTGGCGCATGCTCGATGCGTATCAT
CAGTCTACTCAAACGCTGAATATCCTCAGAGCCTTCGCGACAGGTGGCTA
TGCCGACATCTCGCGCCTGCACGCCTGGAACCTGGACTTTGTGGAAAAAT
CCGAGGAGGGCAGTCGGTATCGGAAACTGGCGTCAAAAGTCGACGAGTCC
TTACGATTTATGAAAGCTATCGGCGTAAATACGGAGTCTGCTACATTCAA
ACAGGCACAGTTTTACACTGCGCACGAATGCCTCCTGCTTTCTTATGAGC
AGGCGCTGACCCGTCAAGACTCCACGACTGGGAAGTGGTACGACTGCTCG
GCGCATATGCTTTGGATAGGAGAACGAACTCGACAGCTTGATGGGGCGCA
CTTGGAATTTACTCGCGGCATTGGGAATCCTCTCGGTGTTAAGATTTCGG
ATAAGATTACCCCCGAAGAGCTTCTGGAGGTGATTGACAACTTAAACCCC
AACAACATACCTGGCCGCCTCTCCCTCATTGTGCGCATGGGCGCAGACAA
GCTACGAGAAAAGCTTCCGGCACTTATACGAGCTGTTCAAAAGGAGGGTC
GCTTTGTGGTTTGGGTGTCAGACCCCGTGCACGGTAATACGATTAAGGCG
GACAATGGTTTGAAGACACGACCCTTCGAGAAGATTCGGGATGAATTACG
AGCTTTCTTCGATGTTCACGACCAGATGGGCACGCATCCCGGCGGTGTGC
ATTTAGAGATGACAGGTAAAGACGTGACTGAGTGCATCGGCGGTACCATC
CAGGACATTAAAGTGGACGACCTAAACAAGCGCTACCACACGCATTGCGA
CCCTCGTCTCAACGGCGTACAAGCTTTAGAGCTGGCTTTTCTAATCGCTG
AACGGATGCGTTCACGCACTGGACTTCCACCCCTCTTCAACGACGCCTAA
AATACCTGGAATTGAAATTCTCAAGTAGTAAGCGGAATGTGTAGCCTGTT
CGATTCTCGCGGAGGAACCCGCGATATACGAGGAGGTTGATTGTGGGGAC
TCCAGTTACGCATGGTACTCTAATACATGCACCTACATGTTGAGCTTTTG
GAAGGAGAAAGAGAACTTTAATCTAAAAGAAAGGGAGGTAGAGGATGTGA
CTCTTAATATTCGATATTGTGTTTAAATAGTTGATATTAAACGCAATTGT
CGCGTAAGTTGAATGGCGACACCGATCTGAGGAAGAACTCCCTTCTATCG
TGTTCAGAAGTCACTATACATACATCTCTTCTTATCTTCAGAAGCCTCCT
TTCTCGTTGTGGGAGGGAAGGAAAGTGAGGAAACCCGCAAGACAGCCAGC
CTACAAAGAGTAAAAGTAATGACAACACGAAAATTGGCCACACCCAAGGA
TCAAAGTGGAGATTGTGAGTTTTCAACGTTATGTCTAATTCTCTATGTGT
TTAAAAGGCCTTAGCTCGTCAGATATCTGCACAGGATTCTGCCCGTGCAC
TGAGTCGGTACATTTTTGGAACGTTTTGTTGGGTCTCTATCTGGGGATGT
AAGCCCTCGGTGTCACAAACGTTGCACAGTCGGACAGTACACTTGAAAAG
TGCCGCTTTCGATTGAGCACGGAAAACAGCGCTGCATGGTAGTACCACAG
TGGACGACTGCGAAGAGGATAGCGAATCACTCTCACCACCTCCACAAATT
GGAGCAAAGTCAAGTATTGGAAGGGTGGCGAGAAAGCTGCGTGTTCGTCC
GGGCTGTAAATCTTCCTCTGAAGTTAAAATCCAACGAAGATTAGGACGCT
TCCACTTAACTCCATTTGATGGAGTGGCGCCAAAAATGTTTTCGACCAGT
TCTAGACCGAGCAAGTGAAACTATCTCCACAAATATGTTTGATAAAGGTA
CATACTGGCTACGGTTGCTCATGCCGTGCAGCGATACT back to topprotein sequence of rna2503 >rna2503-protein ID=rna2503-protein|Name=rna2503|organism=Nannochloropsis gaditana|type=polypeptide|length=664bp
MLTEDDMEVNDSADEEDGFSKDFDVIEDNLMVLIDARPPMLVENVQGTVP
LVTALGIIHHVLKRKIMINQRDHVGILLFGAEAVDEKGEIVGSGNAKFSD
MSRMSQVWGNQVHELQTLGQPTAKRIKQIERLCHEDTNIMNGLCLKHAQK
LPGSSTSAALRDGLRACLRMLEGQSRKELDSRRIWLFTNEDDPSQVNDPS
QVIKDAREGGVEMWVWHFPAQDGREFNRNKFYEPLLAAPTRFVQDGYKIA
DEKDPGYCTKMIDAGSGDVNSLLLGARTPLFKKRRYVRTKLHISVDPPIS
LDVAFYKTIQRCRKPMPVKLAAVSNRRLATSTKWMCEDLVQYVDPELDVA
CGLEFGKGGVTIPLHSAAYEMKQRVCQRDPGLHLLAFLPAEELAWELNVT
SSTLIYPEEMALKGCTRAFSAIRKAMLQQHKMALVRLHINAVSYPRLAVL
LAPPATPGLELIVLPFLDDLRAIESPHLESLPALPSMDQKEAAKSVISRL
AMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKEL
LGRTGEAMRGLWESSRDPDKVLNGGSSGKRKSTVAGVDRLLSLKKEKREV
KDSGKAEKGHHDSVKSEFEAFEGAQTREGLSKLTVRKLKDLCQELKLHVS
GRKDDLIDRLLSQG back to topmRNA from alignment at CM002459.1:534420..536548- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2503 ID=rna2503|Name=rna2503|organism=Nannochloropsis gaditana|type=mRNA|length=2129bp|location=Sequence derived from alignment at CM002459.1:534420..536548- (Nannochloropsis gaditana)
ATGTTAACCGAGGATGATATGGAAGTGAATGACAGTGCAGACGAGGAGGA
TGGCTTCTCCAAGGATTTTGACGTAATTGAAGATAATCTGATGGTGCTTA
TTGATGCTCGGCCCCCCATGCTGGTGGAAAATGTCCAAGGCACGGTAGGT
GACCGGGGGGTGCGTAGGCAGTACCCGGGGAGGAGCAGACCTCAGGATCT
TGCGTCATCTTATAGTAGAAATAAACTTATGTGATGAGACATTTAGCCAA
TTACCTGGTTTTACTCGTTCGCTCATAGGTGCCTTTGGTGACCGCTTTGG
GTATTATTCATCACGTGCTAAAACGCAAAATTATGATCAACCAGCGGGAC
CATGTTGGAATCCTCCTCTTTGGAGCAGAAGCAGTGGACGAAAAGGGAGA
AATTGTAGGCTCTGGAAATGCAAAGTTTTCGGACATGTCCCGCATGAGTC
AGGTTTGGGGGAATCAGGTCCATGAGTTACAGACATTAGGACAGCCAACC
GCCAAGCGGATCAAGCAAATCGAACGGCTCTGCCATGAAGACACCAATAT
CATGAACGGGCTATGTCTCAAGCACGCACAAAAGCTTCCAGGCTCTTCTA
CGTCGGCGGCGCTGCGGGACGGTCTTAGAGCATGTCTTCGGATGCTCGAG
GGGCAGTCCAGAAAGGAATTGGACAGTCGGCGGATCTGGCTGTTCACCAA
TGAAGATGATCCCTCCCAGGTGAACGATCCCAGCCAGGTGATAAAGGACG
CTCGGGAAGGAGGCGTCGAGATGTGGGTATGGCACTTCCCTGCGCAAGAT
GGTCGCGAATTTAACAGAAATAAATTTTACGAGCCCTTGCTAGCTGCACC
AACTCGATTTGTCCAGGACGGGTATAAAATAGCCGATGAAAAAGATCCAG
GGTATTGTACAAAGATGATAGATGCAGGATCTGGAGATGTGAACTCGCTC
CTGCTAGGAGCCCGGACACCTCTATTCAAGAAACGCCGTTACGTGCGTAC
GAAATTGCACATATCTGTGGATCCACCCATTTCTCTCGATGTGGCATTCT
ACAAGACCATTCAACGATGTCGTAAGCCGATGCCCGTAAAACTAGCAGCT
GTATCAAACAGGAGACTGGCCACCTCCACCAAGTGGATGTGTGAGGACCT
AGTGCAGTACGTGGACCCCGAGCTTGACGTAGCATGTGGCTTGGAGTTTG
GAAAAGGCGGCGTCACTATTCCGCTACACAGCGCTGCATACGAAATGAAG
CAGCGCGTTTGCCAAAGAGATCCGGGCCTGCATCTTTTGGCCTTTCTTCC
GGCAGAAGAGTTGGCTTGGGAGCTAAACGTGACCAGCAGTACCCTGATTT
ATCCAGAGGAGATGGCTCTCAAAGGTTGTACGCGAGCCTTCTCTGCTATC
CGAAAAGCCATGCTCCAGCAACATAAGATGGCTTTAGTCCGGCTCCACAT
CAATGCGGTGTCGTATCCACGTCTGGCTGTGCTCCTTGCACCACCTGCCA
CGCCCGGTCTGGAGCTGATAGTTCTACCTTTTCTTGACGATTTGCGCGCC
ATAGAAAGCCCACATTTGGAGAGTTTACCTGCGCTACCAAGCATGGATCA
GAAAGAGGCTGCGAAAAGTGTGATTTCACGTCTGGCGATGAGGTGGGAGG
AATACTACCAAGGCTATAGCAATCCCGGTTTGCAAAAATTTTATGCCGGC
TTGCAAGCCCTGGCCCTAGAGCAATCAGAGGTAGACTGGAATGAGTCGGC
AGACGACCGAACATGGCCGGATGAGAAAGAGTTGCTGGGACGGACGGGTG
AGGCTATGCGTGGTTTGTGGGAATCAAGCCGCGATCCGGACAAGGTCCTG
AACGGCGGGTCAAGTGGAAAACGTAAGTCAACGGTCGCGGGGGTGGATAG
GCTTCTTTCTTTGAAAAAAGAAAAAAGGGAGGTGAAAGACTCAGGTAAGG
CAGAAAAGGGCCATCATGATAGTGTAAAAAGTGAGTTTGAAGCATTTGAG
GGAGCTCAAACAAGAGAAGGACTTTCCAAACTGACAGTAAGGAAGCTCAA
GGACCTTTGCCAGGAATTGAAATTGCACGTCTCCGGCAGGAAAGACGACC
TCATCGATCGCCTTCTTTCACAAGGGTAG back to topCoding sequence (CDS) from alignment at CM002459.1:534420..536548- >rna2503 ID=rna2503|Name=rna2503|organism=Nannochloropsis gaditana|type=CDS|length=3990bp|location=Sequence derived from alignment at CM002459.1:534420..536548- (Nannochloropsis gaditana)
GTGCCTTTGGTGACCGCTTTGGGTATTATTCATCACGTGCTAAAACGCAA
AATTATGATCAACCAGCGGGACCATGTTGGAATCCTCCTCTTTGGAGCAG
AAGCAGTGGACGAAAAGGGAGAAATTGTAGGCTCTGGAAATGCAAAGTTT
TCGGACATGTCCCGCATGAGTCAGGTTTGGGGGAATCAGGTCCATGAGTT
ACAGACATTAGGACAGCCAACCGCCAAGCGGATCAAGCAAATCGAACGGC
TCTGCCATGAAGACACCAATATCATGAACGGGCTATGTCTCAAGCACGCA
CAAAAGCTTCCAGGCTCTTCTACGTCGGCGGCGCTGCGGGACGGTCTTAG
AGCATGTCTTCGGATGCTCGAGGGGCAGTCCAGAAAGGAATTGGACAGTC
GGCGGATCTGGCTGTTCACCAATGAAGATGATCCCTCCCAGGTGAACGAT
CCCAGCCAGGTGATAAAGGACGCTCGGGAAGGAGGCGTCGAGATGTGGGT
ATGGCACTTCCCTGCGCAAGATGGTCGCGAATTTAACAGAAATAAATTTT
ACGAGCCCTTGCTAGCTGCACCAACTCGATTTGTCCAGGACGGGTATAAA
ATAGCCGATGAAAAAGATCCAGGGTATTGTACAAAGATGATAGATGCAGG
ATCTGGAGATGTGAACTCGCTCCTGCTAGGAGCCCGGACACCTCTATTCA
AGAAACGCCGTTACGTGCGTACGAAATTGCACATATCTGTGGATCCACCC
ATTTCTCTCGATGTGGCATTCTACAAGACCATTCAACGATGTCGTAAGCC
GATGCCCGTAAAACTAGCAGCTGTATCAAACAGGAGACTGGCCACCTCCA
CCAAGTGGATGTGTGAGGACCTAGTGCAGTACGTGGACCCCGAGCTTGAC
GTAGCATGTGGCTTGGAGTTTGGAAAAGGCGGCGTCACTATTCCGCTACA
CAGCGCTGCATACGAAATGAAGCAGCGCGTTTGCCAAAGAGATCCGGGCC
TGCATCTTTTGGCCTTTCTTCCGGCAGAAGAGTTGGCTTGGGAGCTAAAC
GTGACCAGCAGTACCCTGATTTATCCAGAGGAGATGGCTCTCAAAGGTTG
TACGCGAGCCTTCTCTGCTATCCGAAAAGCCATGCTCCAGCAACATAAGA
TGGCTTTAGTCCGGCTCCACATCAATGCGGTGTCGTATCCACGTCTGGCT
GTGCTCCTTGCACCACCTGCCACGCCCGGTCTGGAGCTGATAGTTCTACC
TTTTCTTGACGATTTGCGCGCCATAGAAAGCCCACATTTGGAGAGTTTAC
CTGCGCTACCAAGCATGGATCAGAAAGAGGCTGCGAAAAGTGTGATTTCA
CGTCTGGCGATGAGGTGGGAGGAATACTACCAAGGCTATAGCAATCCCGG
TTTGCAAAAATTTTATGCCGGCTTGCAAGCCCTGGCCCTAGAGCAATCAG
AGGTAGACTGGAATGAGTCGGCAGACGACCGAACATGGCCGGATGAGAAA
GAGTTGCTGGGACGGACGGGTGAGGCTATGCGTGGTTTGTGGGAATCAAG
CCGCGATCCGGACAAGGTCCTGAACGGCGGGTCAAGTGGAAAACGTAAGT
CAACGGTCGCGGGGGTGGATAGGCTTCTTTCTTTGAAAAAAGAAAAAAGG
GAGGTGAAAGACTCAGGTAAGGCAGAAAAGGGCCATCATGATAGTGTAAA
AAGTGAGTTTGAAGCATTTGAGGGAGCTCAAACAAGAGAAGGACTTTCCA
AACTGACAGTAAGGAAGCTCAAGGACCTTTGCCAGGAATTGAAATTGCAC
GTCTCCGGCAGGAAAGACGACCTCATCGATCGCCTTCTTTCACAAGGGTA
GATGTTAACCGAGGATGATATGGAAGTGAATGACAGTGCAGACGAGGAGG
ATGGCTTCTCCAAGGATTTTGACGTAATTGAAGATAATCTGATGGTGCTT
ATTGATGCTCGGCCCCCCATGCTGGTGGAAAATGTCCAAGGCACGGTGCC
TTTGGTGACCGCTTTGGGTATTATTCATCACGTGCTAAAACGCAAAATTA
TGATCAACCAGCGGGACCATGTTGGAATCCTCCTCTTTGGAGCAGAAGCA
GTGGACGAAAAGGGAGAAATTGTAGGCTCTGGAAATGCAAAGTTTTCGGA
CATGTCCCGCATGAGTCAGGTTTGGGGGAATCAGGTCCATGAGTTACAGA
CATTAGGACAGCCAACCGCCAAGCGGATCAAGCAAATCGAACGGCTCTGC
CATGAAGACACCAATATCATGAACGGGCTATGTCTCAAGCACGCACAAAA
GCTTCCAGGCTCTTCTACGTCGGCGGCGCTGCGGGACGGTCTTAGAGCAT
GTCTTCGGATGCTCGAGGGGCAGTCCAGAAAGGAATTGGACAGTCGGCGG
ATCTGGCTGTTCACCAATGAAGATGATCCCTCCCAGGTGAACGATCCCAG
CCAGGTGATAAAGGACGCTCGGGAAGGAGGCGTCGAGATGTGGGTATGGC
ACTTCCCTGCGCAAGATGGTCGCGAATTTAACAGAAATAAATTTTACGAG
CCCTTGCTAGCTGCACCAACTCGATTTGTCCAGGACGGGTATAAAATAGC
CGATGAAAAAGATCCAGGGTATTGTACAAAGATGATAGATGCAGGATCTG
GAGATGTGAACTCGCTCCTGCTAGGAGCCCGGACACCTCTATTCAAGAAA
CGCCGTTACGTGCGTACGAAATTGCACATATCTGTGGATCCACCCATTTC
TCTCGATGTGGCATTCTACAAGACCATTCAACGATGTCGTAAGCCGATGC
CCGTAAAACTAGCAGCTGTATCAAACAGGAGACTGGCCACCTCCACCAAG
TGGATGTGTGAGGACCTAGTGCAGTACGTGGACCCCGAGCTTGACGTAGC
ATGTGGCTTGGAGTTTGGAAAAGGCGGCGTCACTATTCCGCTACACAGCG
CTGCATACGAAATGAAGCAGCGCGTTTGCCAAAGAGATCCGGGCCTGCAT
CTTTTGGCCTTTCTTCCGGCAGAAGAGTTGGCTTGGGAGCTAAACGTGAC
CAGCAGTACCCTGATTTATCCAGAGGAGATGGCTCTCAAAGGTTGTACGC
GAGCCTTCTCTGCTATCCGAAAAGCCATGCTCCAGCAACATAAGATGGCT
TTAGTCCGGCTCCACATCAATGCGGTGTCGTATCCACGTCTGGCTGTGCT
CCTTGCACCACCTGCCACGCCCGGTCTGGAGCTGATAGTTCTACCTTTTC
TTGACGATTTGCGCGCCATAGAAAGCCCACATTTGGAGAGTTTACCTGCG
CTACCAAGCATGGATCAGAAAGAGGCTGCGAAAAGTGTGATTTCACGTCT
GGCGATGAGGTGGGAGGAATACTACCAAGGCTATAGCAATCCCGGTTTGC
AAAAATTTTATGCCGGCTTGCAAGCCCTGGCCCTAGAGCAATCAGAGGTA
GACTGGAATGAGTCGGCAGACGACCGAACATGGCCGGATGAGAAAGAGTT
GCTGGGACGGACGGGTGAGGCTATGCGTGGTTTGTGGGAATCAAGCCGCG
ATCCGGACAAGGTCCTGAACGGCGGGTCAAGTGGAAAACGTAAGTCAACG
GTCGCGGGGGTGGATAGGCTTCTTTCTTTGAAAAAAGAAAAAAGGGAGGT
GAAAGACTCAGGTAAGGCAGAAAAGGGCCATCATGATAGTGTAAAAAGTG
AGTTTGAAGCATTTGAGGGAGCTCAAACAAGAGAAGGACTTTCCAAACTG
ACAGTAAGGAAGCTCAAGGACCTTTGCCAGGAATTGAAATTGCACGTCTC
CGGCAGGAAAGACGACCTCATCGATCGCCTTCTTTCACAAGGGTAGATGT
TAACCGAGGATGATATGGAAGTGAATGACAGTGCAGACGAGGAGGATGGC
TTCTCCAAGGATTTTGACGTAATTGAAGATAATCTGATGGTGCTTATTGA
TGCTCGGCCCCCCATGCTGGTGGAAAATGTCCAAGGCACG back to top
|