EWM28192.1, cds2495 (CDS) Nannochloropsis gaditana

Overview
NameEWM28192.1
Unique Namecds2495
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:536405..536548 -
Alignment locationCM002459.1:534420..536270 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28192.1
Productx-ray repair cross-complementing protein 6
Orig transcript idgnl|cribi|Naga_100004g147.9123.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:536405..536548 -
CM002459.1supercontigCM002459.1:534420..536270 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003684damaged DNA binding
GO:0042162telomeric DNA binding
GO:0004003ATP-dependent DNA helicase activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0016043cellular component organization
GO:0000723telomere maintenance
GO:0006303double-strand break repair via nonhomologous end joining
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0043564Ku70:Ku80 complex
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR006165Ku70
IPR005160Ku_C
IPR016194SPOC-like_C_dom
IPR005161Ku_N
IPR006164Ku70/Ku80_beta-barrel_dom
IPR003034SAP_dom
Homology
BLAST of EWM28192.1 vs. NCBI_GenBank
Match: gi|585110537|gb|EWM28192.1| (x-ray repair cross-complementing protein 6 [Nannochloropsis gaditana])

HSP 1 Score: 1372.45 bits (3551), Expect = 0.000e+0
Identity = 664/664 (100.00%), Postives = 664/664 (100.00%), Query Frame = 0
Query:    1 MLTEDDMEVNDSADEEDGFSKDFDVIEDNLMVLIDARPPMLVENVQGTVPLVTALGIIHHVLKRKIMINQRDHVGILLFGAEAVDEKGEIVGSGNAKFSDMSRMSQVWGNQVHELQTLGQPTAKRIKQIERLCHEDTNIMNGLCLKHAQKLPGSSTSAALRDGLRACLRMLEGQSRKELDSRRIWLFTNEDDPSQVNDPSQVIKDAREGGVEMWVWHFPAQDGREFNRNKFYEPLLAAPTRFVQDGYKIADEKDPGYCTKMIDAGSGDVNSLLLGARTPLFKKRRYVRTKLHISVDPPISLDVAFYKTIQRCRKPMPVKLAAVSNRRLATSTKWMCEDLVQYVDPELDVACGLEFGKGGVTIPLHSAAYEMKQRVCQRDPGLHLLAFLPAEELAWELNVTSSTLIYPEEMALKGCTRAFSAIRKAMLQQHKMALVRLHINAVSYPRLAVLLAPPATPGLELIVLPFLDDLRAIESPHLESLPALPSMDQKEAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDPDKVLNGGSSGKRKSTVAGVDRLLSLKKEKREVKDSGKAEKGHHDSVKSEFEAFEGAQTREGLSKLTVRKLKDLCQELKLHVSGRKDDLIDRLLSQG 664
            MLTEDDMEVNDSADEEDGFSKDFDVIEDNLMVLIDARPPMLVENVQGTVPLVTALGIIHHVLKRKIMINQRDHVGILLFGAEAVDEKGEIVGSGNAKFSDMSRMSQVWGNQVHELQTLGQPTAKRIKQIERLCHEDTNIMNGLCLKHAQKLPGSSTSAALRDGLRACLRMLEGQSRKELDSRRIWLFTNEDDPSQVNDPSQVIKDAREGGVEMWVWHFPAQDGREFNRNKFYEPLLAAPTRFVQDGYKIADEKDPGYCTKMIDAGSGDVNSLLLGARTPLFKKRRYVRTKLHISVDPPISLDVAFYKTIQRCRKPMPVKLAAVSNRRLATSTKWMCEDLVQYVDPELDVACGLEFGKGGVTIPLHSAAYEMKQRVCQRDPGLHLLAFLPAEELAWELNVTSSTLIYPEEMALKGCTRAFSAIRKAMLQQHKMALVRLHINAVSYPRLAVLLAPPATPGLELIVLPFLDDLRAIESPHLESLPALPSMDQKEAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDPDKVLNGGSSGKRKSTVAGVDRLLSLKKEKREVKDSGKAEKGHHDSVKSEFEAFEGAQTREGLSKLTVRKLKDLCQELKLHVSGRKDDLIDRLLSQG
Sbjct:    1 MLTEDDMEVNDSADEEDGFSKDFDVIEDNLMVLIDARPPMLVENVQGTVPLVTALGIIHHVLKRKIMINQRDHVGILLFGAEAVDEKGEIVGSGNAKFSDMSRMSQVWGNQVHELQTLGQPTAKRIKQIERLCHEDTNIMNGLCLKHAQKLPGSSTSAALRDGLRACLRMLEGQSRKELDSRRIWLFTNEDDPSQVNDPSQVIKDAREGGVEMWVWHFPAQDGREFNRNKFYEPLLAAPTRFVQDGYKIADEKDPGYCTKMIDAGSGDVNSLLLGARTPLFKKRRYVRTKLHISVDPPISLDVAFYKTIQRCRKPMPVKLAAVSNRRLATSTKWMCEDLVQYVDPELDVACGLEFGKGGVTIPLHSAAYEMKQRVCQRDPGLHLLAFLPAEELAWELNVTSSTLIYPEEMALKGCTRAFSAIRKAMLQQHKMALVRLHINAVSYPRLAVLLAPPATPGLELIVLPFLDDLRAIESPHLESLPALPSMDQKEAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDPDKVLNGGSSGKRKSTVAGVDRLLSLKKEKREVKDSGKAEKGHHDSVKSEFEAFEGAQTREGLSKLTVRKLKDLCQELKLHVSGRKDDLIDRLLSQG 664          
BLAST of EWM28192.1 vs. NCBI_GenBank
Match: gi|553196542|ref|XP_005856369.1| (ku p70 dna, partial [Nannochloropsis gaditana CCMP526] >gi|422292694|gb|EKU19996.1| ku p70 dna, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 244.202 bits (622), Expect = 1.704e-74
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0
Query:  461 LIVLPFLDDLRAIESPHLESLPALPSMDQKEAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDPDKVLNGGSSG 578
            +IVLPFLDDLRAIESPHLESLPALPSMDQKEAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDPDKVLNGGSSG
Sbjct:    1 MIVLPFLDDLRAIESPHLESLPALPSMDQKEAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDPDKVLNGGSSG 118          
BLAST of EWM28192.1 vs. NCBI_GenBank
Match: gi|695397520|ref|XP_009521762.1| (hypothetical protein PHYSODRAFT_484094 [Phytophthora sojae] >gi|348686659|gb|EGZ26474.1| hypothetical protein PHYSODRAFT_484094 [Phytophthora sojae])

HSP 1 Score: 185.267 bits (469), Expect = 7.861e-47
Identity = 180/654 (27.52%), Postives = 286/654 (43.73%), Query Frame = 0
Query:   27 EDNLMVLIDARPPMLV------ENVQGTVPLVTALGIIHHVLKRKIMINQRDHVGILLFGAEAVDEKGEIVGSGNAKFSDMSRMSQVWGNQVHELQTLGQPTAKRIKQIERLCHEDTNIMNGLCLKHAQKLPGSSTSAALRDGLRACLRMLEGQSRKELDSRRIWLFTNEDDPS-----QVNDPSQVIKDAREGGVEMWVWHFPAQDGREFNRNKFYEPLLAAPTRFVQDGYKIADEKDPGYCTKMIDAGSGDVNSLLLGARTPLFKKRRYVRTKLHISVDPPISLDVAFYKTIQRCRKPMPVKLAAVSNRRLATSTKWMCEDLVQYVDPELDVACGLEFGKGGVTIPLHSAAYEMKQRVCQRDPGLHLLAFLPAEELAWELNVTSSTLIYPEEMALKGCTRAFSAIRKAMLQQHKMALVRLHINAVSYPRLAVL---------LAPPATPGLELIVLPFLDDLRAIESPHLESLPALPSMDQKEAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDPDKVLNGGSSGKRKSTVAGVDRLLSLKKEKREVKDSGKAEKGHHDSVKSEFEAFEGAQTREGLSKLTVRKLKDLCQELKLHVSGRKDDLIDRL 660
            +D L+VL+D R  M        E    +      + ++  +LK K++ N    + ++ FG     E G +                    QV+ELQ LG P+A+RIK ++ L   D        ++++ KL       +  + L  C       + K+ DS+RIW+FTN+D P      +V    + +++  E    + +++        F+ +KFY     +   F  D  +   E +  Y         G ++ L+ G+    F+KRR     LHI+    +S+ V  Y  +   RK  PV L A +N  L T TKW+CED   Y+ P+  +   +++G   V         E+K       PGL L+ F P   L W  N+ S   +YP +  ++G + AF AI  +M++++K AL RL     S PRL  L         +      GL +I LP+LDD+R I        P  P  ++ +AAK +IS L +     ++   NP LQK YA +QALAL++  + ++E A D T PD  E  G+  +A+    E                    V G + + +    KR+V  +GK E G     K E+ A   +     + K T+ +LK       L   GRK DL+D +
Sbjct:   28 KDALIVLLDVRKVMFTPYPHADEAKAPSTWFHAVVELVIKLLKSKVVANDNSQLSVVFFGTNKRGEAGTL-------------------EQVYELQPLGYPSAQRIKDLQALLEADVQ-AEYESMENSDKL-------SFSNALWQCGISFSNANLKKKDSQRIWIFTNDDSPQGPDGEEVGRIQKQVQNHTELKRTLNLFYITPPGKESFDLSKFYG---CSFKDFSADANEEVVENEASYQPAF---PVGSLDDLMDGSLRKRFRKRRLTAFPLHIT--KGVSIGVELYALVVVQRKNTPVALDASTNTPLKTETKWLCEDTGAYLTPD-QIKKYIDYGGKRVYF-TRDDVVEIKHYDA---PGLQLICFKPLSSLKWNENIRSPYFVYPCDGYIEGSSTAFMAILNSMVRKNKFALARLIARKTSEPRLVALVPQEEENDEMGQVQPSGLNVIFLPYLDDIRDI--------PVDP--EKIDAAKHLISTLKLTEAPSFE---NPELQKHYAAIQALALDEEVLQFDE-AKDTTLPD-AEGFGQDEDAITAFRE--------------------VCGGELIDASTNAKRKVTKAGKPEAGETFD-KEEWAALVASN---AIQKKTIPQLKAFLHAHGLAAVGRKADLVDAV 602          
BLAST of EWM28192.1 vs. NCBI_GenBank
Match: gi|1173959255|gb|OQS05508.1| (ATP-dependent DNA helicase 2 subunit [Thraustotheca clavata])

HSP 1 Score: 182.185 bits (461), Expect = 9.544e-46
Identity = 171/652 (26.23%), Postives = 282/652 (43.25%), Query Frame = 0
Query:   30 LMVLIDARPPMLVENVQGTVPLVTALGIIHHVLKRKIMINQRDHVGILLFGAEAVDEKGEIVGSGNAKFSDMSRMSQVWGNQVHELQTLGQPTAKRIKQIERLCHEDTNIMNGLCLKHAQKLPGSSTSAALRDGLRACLRMLEGQSRKELDSRRIWLFTNEDDPSQVN--DPSQVIK---DAREGGVEMWVWHFPAQDGREFNRNKFYEPLLAAPTRFVQDGYKIADEKDPGYCTKMIDAGSGDVNSLLLGARTPLFKKRRYVRTKLHISVDPPISLDVAFYKTIQRCRKPMPVKLAAVSNRRLATSTKWMCEDLVQYVDPELDVACGLEFGKGGVTIPLHSAAYEMKQRVCQRDPGLHLLAFLPAEELAWELNVTSSTLIYPEEMALKGCTRAFSAIRKAMLQQHKMALVRLHINAVSYPRLAVLLAPPAT---------PGLELIVLPFLDDLRAIESPHLESLPALPSMDQKEAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDPDKVLNGG-----SSGKRKSTVAGVDRLLSLKKEKREVKDSGKAEKGHHDSVKSEFEAFEGAQTREGLSKLTVRKLKDLCQELKLHVSGRKDDLIDRLLS 662
            L+VL+D R  +      G     T + ++  +LK KI+ N    +GI+ FG         +                     V+E Q LG P+A RIKQ+  L   D     G           S+   +L + L          + K+ DS+ IW+ TN +DP+  N  +  +V+K   +  E    + +++ P      F+ + FY  +    T   QD         P Y                +   +   + R+   T L  ++   I++ V  Y    +  KP P+ L A +N  L T TKW+C++   Y+ PE  V   +E+GK  V    + ++ +M +       GL LL F P   L    N+ +   IYP E  ++G T AF A+ ++M+++  MA+ RL +   + PRL  ++               G  LI LP++DD+R + + H       P++DQ +AAK VI  L ++    +Q   NP LQK YA +QALAL +S + +++  DD T PD   ++G     +    ES R+    L GG      + KRK++  G       K +K+  K        H+  V ++   ++       ++K TV +LK          SG+KD+L++R ++
Sbjct:   27 LLVLLDVRSSLFTPLEDGNTWFNTCVEMLVKLLKSKIIANDNSLMGIIFFGTSQTKNVNSL-------------------EHVYEFQELGFPSAHRIKQLRELMTVDFAKEYGSM--------ASNDQVSLSNALWHAGIAFSNANLKKKDSQTIWILTNNEDPTIGNAEECERVLKQFTNHMELKRSIQLFYMPPPAKESFSLSSFYSRMFMEATMLAQDDLSTLQ---PAYAIHTYQE---------MMEESLRKRFRKRRLTTLSWTIAKGIAIGVELYALTVKQAKPSPINLEAETNSILKTETKWLCDETGMYLTPE-QVKKYIEYGKQRV----YFSSDDMVELKYFDAAGLQLLGFQPKSLLKDHENLRAPYFIYPAEGYIEGSTVAFVALLQSMVKKDVMAIARLIVRKNTPPRLVAIVPQEEIYDDQGQIQPSGFNLIFLPYVDDVRNLRADHNSQRD--PTLDQVDAAKKVIQSLTIKEVPSFQ---NPELQKHYASIQALALNESSLAFDDK-DDTTLPD---VVGFKRNKVVSALESFRE----LCGGDELAKDNAKRKASTPGG------KGDKKAAK--------HNADVSTDLATWKKLAASGVVAKKTVVELKAFLSAHGQSTSGKKDELVNRAMA 607          
BLAST of EWM28192.1 vs. NCBI_GenBank
Match: gi|700422827|ref|XP_009949739.1| (PREDICTED: X-ray repair cross-complementing protein 6, partial [Leptosomus discolor])

HSP 1 Score: 176.792 bits (447), Expect = 5.921e-44
Identity = 171/651 (26.27%), Postives = 282/651 (43.32%), Query Frame = 0
Query:   28 DNLMVLIDARPPMLVENVQGTVPLVTALGIIHHVLKRKIMINQRDHVGILLFGAEAVDEKGEIVGSGNAKFSDMSRMSQVWGNQVHELQTLGQPTAKRIKQIERLCHEDTNIMNGLCLKHAQKLPGSSTSAALRDGLRACLRMLEGQSRKELDSRRIWLFTNEDDPSQVNDPSQV------IKDAREGGVEMWVWHFPAQDGREFNRNKFYEPLLAAPTRFVQDGYKIADEKDPGYCTKMIDAGSGDVNSLLLGARTPLFKKRRYVRTKLHISVDPPISLDVAFYKTIQRCRKPMPVKLAAVSNRRLATSTKWMCEDLVQYVDPELDVACGLEFGKGGVTIPLHSAAYEMKQRVCQRD-PGLHLLAFLPAEELAWELNVTSSTLIYPEEMALKGCTRAFSAIRKAMLQQHKMALVRLHINAVSYPRLAVLLAPP----------ATPGLELIVLPFLDDLRAIESPHLESLPALPSMDQKEAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDPDKVLNGGSSGKRKSTVAGVDRLLSLKKEKREVKDSGKAEKGHHDSVKSEFEAFEGAQTREGLSKLTVRKLKDLCQELKLHVSGRKDDLIDRLL 661
            D+L+ L+DA   M   +  G  P    +  I +V   KI+ + RD + ++ +G E            +A F             V+ LQ L  P AKR+ ++++   ++  ++        +K  G +   +L + L AC  +     R  L  +RI LFTNEDDP   ND ++         D R+ G+ + + H     G  F+ + FY           +D   IA+++D G   +     S  +  L+   R    KKR  VR  L+++ D  +SL V  Y  +Q+  KP PVKL   +N  + T T+         + P  D      +G   + +       E  + + + D PGL L+ F P   L    ++  S  IYPEE  + G T  F+A+    L++  MAL R      + PR   L+             A PG  +I LP+ DD+R ++    E +PA  S +Q +  K +I +L  ++      + NP LQ+ +  L+ALAL++ E    E A+D T P  +E+  R G  +    E    PD   +G +  +++++    ++   ++  K E++     +KG                    L KLTV  LKD C+   L   G+K +L+D L+
Sbjct:   22 DSLIFLVDASKAMFESDGDGVTPFDMTVQCIRNVYTSKIISSDRDLLSVVFYGTEK--------NKNSADFK-----------HVYVLQELDNPGAKRVLELDQYRGDEGQVL-------FRKTFGHNADYSLGEALWACSNLF-SDVRVRLSHKRIMLFTNEDDP-HANDSAKAKLARTRAGDLRDTGIILDLMHLKKPGG--FDISLFY-----------RDIINIAEDEDLGVQPE----ESVKLEHLMKKVRAKETKKRTLVRLNLYLNKD--LSLAVGVYNLVQKAHKPFPVKLYRETNEPVKTKTRMFNGKTGSLLLPS-DTKRAQTYGNRQIVL-----EKEETEEIKRFDSPGLFLIGFKPLSMLKQHHHIKPSQFIYPEESLVNGSTTLFNALLIKCLEREVMALCRYTTRRNTPPRFVALVPQEEEVDEQKVQIAPPGFHIIFLPYADDIRNVD--FTEKVPA--SQEQVDKMKEIIQKLRFKYRT--DSFENPVLQQHFRNLEALALDEME---PEKAEDLTMPKSEEMNRRLGNLVEEFKELVYPPDYNPDGMAVKRKQASDNQTEKRPKVEVSKDELR--SHVQKG-------------------TLGKLTVPVLKDACRIYGLKGGGKKQELMDVLM 589          
BLAST of EWM28192.1 vs. NCBI_GenBank
Match: gi|695145457|ref|XP_009500118.1| (PREDICTED: X-ray repair cross-complementing protein 6, partial [Phalacrocorax carbo])

HSP 1 Score: 175.637 bits (444), Expect = 1.109e-43
Identity = 170/649 (26.19%), Postives = 277/649 (42.68%), Query Frame = 0
Query:   28 DNLMVLIDARPPMLVENVQGTVPLVTALGIIHHVLKRKIMINQRDHVGILLFGAEAVDEKGEIVGSGNAKFSDMSRMSQVWGNQVHELQTLGQPTAKRIKQIERLCHEDTNIMNGLCLKHAQKLPGSSTSAALRDGLRACLRMLEGQSRKELDSRRIWLFTNEDDPSQVNDPSQV------IKDAREGGVEMWVWHFPAQDGREFNRNKFYEPLLAAPTRFVQDGYKIADEKDPGYCTKMIDAGSGDVNSLLLGARTPLFKKRRYVRTKLHISVDPPISLDVAFYKTIQRCRKPMPVKLAAVSNRRLATSTKWMCEDLVQYVDPELDVACGLEFGKGGVTIPLHSAAYEMKQRVCQRDPGLHLLAFLPAEELAWELNVTSSTLIYPEEMALKGCTRAFSAIRKAMLQQHKMALVRLHINAVSYPRLAVLL----------APPATPGLELIVLPFLDDLRAIESPHLESLPALPSMDQKEAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDPDKVLNGGSSGKRKSTVAGVDRLLSLKKEKREVKDSGKAEKGHHDSVKSEFEAFEGAQTREGLSKLTVRKLKDLCQELKLHVSGRKDDLIDRL 660
            D+L+ L+DA   M   +  G  P    +  I  V   KI+ + RD + ++ +G E    + +                      ++ LQ L  P AKR+ +++R   ++  I+        ++  G +   +L + L AC  +     R  L  +RI LFTNED+P   ND ++         D R+ G+ + + H     G  F+ + FY           +D   IA+++D G    +    SG +  L+   R    KKR  VR  L++S D  +SL V  Y  IQ+  KP PVKL   +N  + T T+         + P  D      +G   + +         +       PGL L+ F P   L    ++  S  IYPEE  + G T  F+A+    L++  MAL R      + PR   L+             A PG  +I LP+ DD R ++    E +PA  S +Q +  K +I +L  ++      + NP LQ+ +  L+ALAL+  E    E A+D T P  +E+  R G  +    E    PD   +G ++ +++ +    +     K+ K E+ +         D ++S  +       +  L KLTV  LKD C+  +L   G+K +L+D L
Sbjct:    9 DSLIFLVDASEAMFESDGDGVTPFDMTIQCIRSVYTSKIISSDRDLLSVVFYGTEKNKNQADF-------------------KHIYVLQELDNPGAKRVLELDRYRGDEGQIL-------FRETFGHNADYSLGEALWACSNLF-SDVRVRLSHKRIMLFTNEDNP-HANDSAKAKLARTRAGDLRDTGIILDLMHLKKPGG--FDISLFY-----------RDIINIAEDEDLG----IQPEESGKLEHLMKNVRAKETKKRTLVRLNLYLSKD--LSLSVGVYNLIQKAYKPYPVKLYRETNEPVKTKTRMFNGKTGSLLLPS-DTKRAQTYGNRQIVLEKEETEELKRFD----SPGLFLIGFKPLSMLKQHHHMKPSQFIYPEESLVSGSTTLFNALLMKCLEREVMALCRYTARRNTPPRFVALVPQEEEVDEQKVQVAPPGFHIIFLPYADDKRNVD--FTEKVPA--SQEQVDKMKEIIQKLRFKYRT--DSFENPVLQQHFRNLEALALDMME---PEQAEDLTMPKVEEMNRRLGNLVEEFKELVYAPDYSPDGNAAKRKQPSDWQTE-----KRPKVEISE---------DELRSHVQ-------KGTLGKLTVPVLKDACRFYRLRGGGKKQELMDAL 575          
BLAST of EWM28192.1 vs. NCBI_GenBank
Match: gi|699671329|ref|XP_009900754.1| (PREDICTED: X-ray repair cross-complementing protein 6 isoform X1 [Picoides pubescens])

HSP 1 Score: 176.022 bits (445), Expect = 1.169e-43
Identity = 181/650 (27.85%), Postives = 278/650 (42.77%), Query Frame = 0
Query:   28 DNLMVLIDARPPMLVENVQGTVPLVTALGIIHHVLKRKIMINQRDHVGILLFGAEAVDEKGEIVGSGNAKFSDMSRMSQVWGNQVHELQTLGQPTAKRIKQIERLCHEDTNIMNGLCLKHAQKLPGSSTSAALRDGLRACLRMLEGQSRKELDSRRIWLFTNEDDPSQVNDPSQV------IKDAREGGVEMWVWHFPAQDGREFNRNKFYEPLLAAPTRFVQDGYKIADEKDPGYCTKMIDAGSGDVNSLLLGARTPLFKKRRYVRTKLHISVDPPISLDVAFYKTIQRCRKPMPVKLAAVSNRRLATSTKWMCEDLVQYVDPELDVACGLEFGKGGVTIPLHSAAYEMKQRVCQRDP-GLHLLAFLPAEELAWELNVTSSTLIYPEEMALKGCTRAFSAIRKAMLQQHKMALVRLHINAVSYPRLAVLLAPP----------ATPGLELIVLPFLDDLRAIESPHLESLPALPSMDQKEAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDPDKVLNGGSSGKRKSTVAGVDRLLSLKKEKREVKDSGKAEKGHHDSVKSEFEAFEGAQTREGLSKLTVRKLKDLCQELKLHVSGRKDDLIDRL 660
            D+L+ L+DA   M   + +G  P    +  I +V   KI+ + +D + ++ +G E            +A F             V+ LQ L  P AKR+ ++++   ++     G  L H     G +   +L + L AC  +     R  L  +RI LFTNEDDP   ND ++         D R+ G+ + + H     G  F+ + FY           +D   +A+++D G   K     S  +  L+   R    KKR  VR  L++S D  +SL VA Y  IQ+  KP PVKL   +N  + T T+         + P  D      +G   +         E  + + Q DP GL L+ F P   L    ++  S  IYPEE  + G T  F+A+    L++  MAL R      + PR   L+               PG  +I LP+ DD R ++    E +PA  S  Q +  K +I +L  ++     G+ NP LQ+ +  L+ALAL+  E    E A+D T P  +E+  R G  +    +    PD   +G +  KRK T  G     + K+ K EV +                E  +    +  L KLTV  LKD C+   L+  G+K +L+D L
Sbjct:   39 DSLIFLVDASKAMFESDEEGMTPFEMTIQCIRNVYTSKIISSDKDLLSVVFYGTEN--------SKNSADFK-----------HVYVLQDLDNPGAKRVLELDQYGGDE-----GQALFHDTF--GHNADYSLGEALWACSNLF-SDVRVRLSHKRIMLFTNEDDP-HANDSAKAKLARTRAGDLRDTGIILDLMHLKKPGG--FDISLFY-----------RDIINLAEDEDLGIQPK----ESEKLEHLMKKVRAKQTKKRAMVRLNLYLSKD--LSLSVAVYNLIQKAYKPYPVKLYRETNEPVKTKTRTFSSQTGSLLLPS-DTKRAQTYGNRQIV-----LEKEETEELKQFDPPGLFLIGFKPLSMLKHHHHIKHSQFIYPEESLVSGSTTLFNALLMKCLEREVMALCRYTARRNTPPRFVALVPQEEELDEQKVQITPPGFHVIFLPYADDKRKVDC--TEKVPA--SRMQVDKMKEIIQKLRFKYRT--DGFENPVLQQHFRNLEALALDMME---PEQAEDLTMPKVEEMNRRLGNLVEEFKQLVYPPDYNPDGKAV-KRKQTSDGQ----TEKRPKVEVSE----------------EELQSHVQKGTLGKLTVSTLKDACRLYGLNDGGKKQELMDAL 605          
BLAST of EWM28192.1 vs. NCBI_GenBank
Match: gi|675174031|ref|XP_008895900.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|566013497|gb|ETI36408.1| hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|568009126|gb|ETL83337.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568103537|gb|ETN18194.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|570317224|gb|ETO65172.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570941017|gb|ETP06274.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 175.252 bits (443), Expect = 3.048e-43
Identity = 179/661 (27.08%), Postives = 290/661 (43.87%), Query Frame = 0
Query:   27 EDNLMVLIDARPPMLVENVQGTVP-----LVTALGIIHHVLKRKIMINQRDHVGILLFGAEAVDEKGEIVGSGNAKFSDMSRMSQVWGNQVHELQTLGQPTAKRIKQIERLCHEDTNIMNGLCLKHAQKLPGSSTSAALRDGLRACLRMLEGQSRKELDSRRIWLFTNEDDPS-----QVNDPSQVIKDAREGGVEMWVWHFPAQDGREFNRNKFYEPLLAAPTRFVQDGYKIADEKDPGYCTKMIDAGSGDVNSLLLGARTPLFKKRRYVRTKLHISVDPPISLDVAFYKTIQRCRKPMPVKLAAVSNRRLATSTKWMCEDLVQYVDPELDVACGLEFGKGGVTIPLHSAAYEMKQRVCQRDPGLHLLAFLPAEELAWELNVTSSTLIYPEEMALKGCTRAFSAIRKAMLQQHKMALVRLHINAVSYPRLAVL---------LAPPATPGLELIVLPFLDDLRAIESPHLESLPALPSM--DQK--EAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDP--DKVLNGGSSGKRKSTVAGVDRLLSLKKEKREVKDSGKAEKGHHDSVKSEFEAFEGAQTREGLSKLTVRKLKDLCQELKLHVSGRKDDLIDRLLS 662
            +D L+VL+D R  M       T           + ++  +LK K++ N    + ++ FG     E G +                    QV+E Q LG P+A+RIK ++ L   D        ++++ KL       +  + L  C       + K+ DS+RIW+FTN+D P      +V    + +++  E    + +++        F+  KFY         F     +  +E      T         ++ L+ G+    F+KRR     LHI+    +S+ V  Y  +   RK  PV L A +N  L T TKW+CED   Y+ P+  +   +++G   V         E+K       PGL L+ F P   L W  N+ S   +YP +  ++G + AF AI  +M+++ K AL RL     S PRL  L         +      G  +I LP+LDD+R +        P  P M  DQ+  +AAK +IS+L +     ++   NP LQK YA +QALAL +  ++++E+  D T PD     G + E ++    + RD     +++  ++ KRKS+ +G  +  + K  K +   + K E       K+E+ A   +     + K TV +LK       L   GRK +LID + S
Sbjct:   30 KDALIVLLDVRKAMFSPYPHATAEAPSTWFHAVVELVIKLLKSKVVANDNSLLSVVFFGTNKRGEAGAL-------------------EQVYEFQPLGFPSAQRIKDLQALLEADIQ-SEFESMQNSDKL-------SFSNALWQCGISFSNANLKKKDSQRIWIFTNDDSPEGPDAEEVGRIQKQVQNHTELKRTLNLFYITPPGKENFDLAKFYG------CNFKDFSAEEDEENVEDEATFQPAFPVSSLDDLMDGSLRKRFRKRRLTTFPLHIT--KGVSIGVELYALVVVQRKNTPVALDASTNTPLKTETKWLCEDTGAYLTPD-QIKKYIDYGGKRVYF-TRDDVVEIKHYDA---PGLQLICFKPLNSLKWNENIRSPYFVYPCDGYIEGSSTAFMAILNSMVRKQKFALARLIARKTSEPRLVALVPQEEENDEMGQVQPSGFNVIFLPYLDDIRDV--------PVDPVMNVDQEKIKAAKQLISKLKLTEAPSFE---NPELQKHYAAIQALALNEEALEFDENK-DTTLPDAD---GFSQEEVKDAITNFRDVCGGDLIDVSTAAKRKSSASGGRKSTTKKTAKAKAGSANKPE-AEETFDKNEWAALVASNV---IQKKTVAQLKAFLHAHGLAAVGRKAELIDAVKS 631          
BLAST of EWM28192.1 vs. NCBI_GenBank
Match: gi|570971234|gb|ETP34353.1| (hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 175.252 bits (443), Expect = 3.138e-43
Identity = 179/661 (27.08%), Postives = 290/661 (43.87%), Query Frame = 0
Query:   27 EDNLMVLIDARPPMLVENVQGTVP-----LVTALGIIHHVLKRKIMINQRDHVGILLFGAEAVDEKGEIVGSGNAKFSDMSRMSQVWGNQVHELQTLGQPTAKRIKQIERLCHEDTNIMNGLCLKHAQKLPGSSTSAALRDGLRACLRMLEGQSRKELDSRRIWLFTNEDDPS-----QVNDPSQVIKDAREGGVEMWVWHFPAQDGREFNRNKFYEPLLAAPTRFVQDGYKIADEKDPGYCTKMIDAGSGDVNSLLLGARTPLFKKRRYVRTKLHISVDPPISLDVAFYKTIQRCRKPMPVKLAAVSNRRLATSTKWMCEDLVQYVDPELDVACGLEFGKGGVTIPLHSAAYEMKQRVCQRDPGLHLLAFLPAEELAWELNVTSSTLIYPEEMALKGCTRAFSAIRKAMLQQHKMALVRLHINAVSYPRLAVL---------LAPPATPGLELIVLPFLDDLRAIESPHLESLPALPSM--DQK--EAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRD--PDKVLNGGSSGKRKSTVAGVDRLLSLKKEKREVKDSGKAEKGHHDSVKSEFEAFEGAQTREGLSKLTVRKLKDLCQELKLHVSGRKDDLIDRLLS 662
            +D L+VL+D R  M       T           + ++  +LK K++ N    + ++ FG     E G +                    QV+E Q LG P+A+RIK ++ L   D        ++++ KL       +  + L  C       + K+ DS+RIW+FTN+D P      +V    + +++  E    + +++        F+  KFY         F     +  +E      T         ++ L+ G+    F+KRR     LHI+    +S+ V  Y  +   RK  PV L A +N  L T TKW+CED   Y+ P+  +   +++G   V         E+K       PGL L+ F P   L W  N+ S   +YP +  ++G + AF AI  +M+++ K AL RL     S PRL  L         +      G  +I LP+LDD+R +        P  P M  DQ+  +AAK +IS+L +     ++   NP LQK YA +QALAL +  ++++E+  D T PD     G + E ++    + RD     +++  ++ KRKS+ +G  +  + K  K +   + K E       K+E+ A   +     + K TV +LK       L   GRK +LID + S
Sbjct:   30 KDALIVLLDVRKAMFSPYPHATAEAPSTWFHAVVELVIKLLKSKVVANDNSLLSVVFFGTNKRGEAGAL-------------------EQVYEFQPLGFPSAQRIKDLQALLEADIQ-SEFESMQNSDKL-------SFSNALWQCGISFSNANLKKKDSQRIWIFTNDDSPEGPDAEEVGRIQKQVQNHTELKRTLNLFYITPPGKENFDLAKFYG------CNFKDFSAEEDEENVEDEATFQPAFPVSSLDDLMDGSLRKRFRKRRLTTFPLHIT--KGVSIGVELYALVVVQRKNTPVALDASTNTPLKTETKWLCEDTGAYLTPD-QIKKYIDYGGKRVYF-TRDDVVEIKHYDA---PGLQLICFKPLNSLKWNENIRSPYFVYPCDGYIEGSSTAFMAILNSMVRKQKFALARLIARKTSEPRLVALVPQEEENDEMGQVQPSGFNVIFLPYLDDIRDV--------PVDPVMNVDQEKIKAAKQLISKLKLTEAPSFE---NPELQKHYAAIQALALNEEALEFDENK-DTTLPDAD---GFSQEEVKDAITNFRDVCGGDLIDVSTAAKRKSSASGGRKSTTKKTAKAKAGSANKPE-AEETFDKNEWAALVASN---AIQKKTVAQLKAFLHAHGLAAVGRKAELIDAVKS 631          
BLAST of EWM28192.1 vs. NCBI_GenBank
Match: gi|567950975|gb|ETK76682.1| (hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567979639|gb|ETL30115.1| hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 175.252 bits (443), Expect = 3.664e-43
Identity = 179/661 (27.08%), Postives = 290/661 (43.87%), Query Frame = 0
Query:   27 EDNLMVLIDARPPMLVENVQGTVP-----LVTALGIIHHVLKRKIMINQRDHVGILLFGAEAVDEKGEIVGSGNAKFSDMSRMSQVWGNQVHELQTLGQPTAKRIKQIERLCHEDTNIMNGLCLKHAQKLPGSSTSAALRDGLRACLRMLEGQSRKELDSRRIWLFTNEDDPS-----QVNDPSQVIKDAREGGVEMWVWHFPAQDGREFNRNKFYEPLLAAPTRFVQDGYKIADEKDPGYCTKMIDAGSGDVNSLLLGARTPLFKKRRYVRTKLHISVDPPISLDVAFYKTIQRCRKPMPVKLAAVSNRRLATSTKWMCEDLVQYVDPELDVACGLEFGKGGVTIPLHSAAYEMKQRVCQRDPGLHLLAFLPAEELAWELNVTSSTLIYPEEMALKGCTRAFSAIRKAMLQQHKMALVRLHINAVSYPRLAVL---------LAPPATPGLELIVLPFLDDLRAIESPHLESLPALPSM--DQK--EAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDP--DKVLNGGSSGKRKSTVAGVDRLLSLKKEKREVKDSGKAEKGHHDSVKSEFEAFEGAQTREGLSKLTVRKLKDLCQELKLHVSGRKDDLIDRLLS 662
            +D L+VL+D R  M       T           + ++  +LK K++ N    + ++ FG     E G +                    QV+E Q LG P+A+RIK ++ L   D        ++++ KL       +  + L  C       + K+ DS+RIW+FTN+D P      +V    + +++  E    + +++        F+  KFY         F     +  +E      T         ++ L+ G+    F+KRR     LHI+    +S+ V  Y  +   RK  PV L A +N  L T TKW+CED   Y+ P+  +   +++G   V         E+K       PGL L+ F P   L W  N+ S   +YP +  ++G + AF AI  +M+++ K AL RL     S PRL  L         +      G  +I LP+LDD+R +        P  P M  DQ+  +AAK +IS+L +     ++   NP LQK YA +QALAL +  ++++E+  D T PD     G + E ++    + RD     +++  ++ KRKS+ +G  +  + K  K +   + K E       K+E+ A   +     + K TV +LK       L   GRK +LID + S
Sbjct:   30 KDALIVLLDVRKAMFSPYPHATAEAPSTWFHAVVELVIKLLKSKVVANDNSLLSVVFFGTNKRGEAGAL-------------------EQVYEFQPLGFPSAQRIKDLQALLEADIQ-SEFESMQNSDKL-------SFSNALWQCGISFSNANLKKKDSQRIWIFTNDDSPEGPDAEEVGRIQKQVQNHTELKRTLNLFYITPPGKENFDLAKFYG------CNFKDFSAEEDEENVEDEATFQPAFPVSSLDDLMDGSLRKRFRKRRLTTFPLHIT--KGVSIGVELYALVVVQRKNTPVALDASTNTPLKTETKWLCEDTGAYLTPD-QIKKYIDYGGKRVYF-TRDDVVEIKHYDA---PGLQLICFKPLNSLKWNENIRSPYFVYPCDGYIEGSSTAFMAILNSMVRKQKFALARLIARKTSEPRLVALVPQEEENDEMGQVQPSGFNVIFLPYLDDIRDV--------PVDPVMNVDQEKIKAAKQLISKLRLTEAPSFE---NPELQKHYAAIQALALNEEALEFDENK-DTTLPDAD---GFSQEEVKDAITNFRDVCGGDLIDVSTAAKRKSSASGGRKSTTKKTAKAKAGSANKPE-AEETFDKNEWAALVASNV---IQKKTVAQLKAFLHAHGLAAVGRKAELIDAVKS 631          
The following BLAST results are available for this feature:
BLAST of EWM28192.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110537|gb|EWM28192.1|0.000e+0100.00x-ray repair cross-complementing protein 6 [Nannoc... [more]
gi|553196542|ref|XP_005856369.1|1.704e-7499.15ku p70 dna, partial [Nannochloropsis gaditana CCMP... [more]
gi|695397520|ref|XP_009521762.1|7.861e-4727.52hypothetical protein PHYSODRAFT_484094 [Phytophtho... [more]
gi|1173959255|gb|OQS05508.1|9.544e-4626.23ATP-dependent DNA helicase 2 subunit [Thraustothec... [more]
gi|700422827|ref|XP_009949739.1|5.921e-4426.27PREDICTED: X-ray repair cross-complementing protei... [more]
gi|695145457|ref|XP_009500118.1|1.109e-4326.19PREDICTED: X-ray repair cross-complementing protei... [more]
gi|699671329|ref|XP_009900754.1|1.169e-4327.85PREDICTED: X-ray repair cross-complementing protei... [more]
gi|675174031|ref|XP_008895900.1|3.048e-4327.08hypothetical protein, variant 1 [Phytophthora para... [more]
gi|570971234|gb|ETP34353.1|3.138e-4327.08hypothetical protein, variant 1 [Phytophthora para... [more]
gi|567950975|gb|ETK76682.1|3.664e-4327.08hypothetical protein, variant 1 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2503rna2503Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications