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Properties
| Property Name | Value |
|---|
| Product | THUMP domain-containing protein |
| Orig transcript id | gnl|cribi|Naga_100004g142.9223.mrna |
| Orig protein id | gnl|cribi|Naga_100004g142.9223 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:527405..529423 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2500 ID=rna2500|Name=rna2500|organism=Nannochloropsis gaditana|type=mRNA|length=2214bp
CGTCAGTCAGGCTACACTCGGAAGGCCTTCCATCACAAATGTTGTCAAAG
TTTCTTTTCTCCAAATTATGCCTTCTCAGATAAAGAGTCCGCACAGATCA
CGTAATGGCGGACAGGACGCAAGAAAATGGTGAGAAAAGTGGCCAGTCCG
ATGATACGACAGATGCTGAGGTCATGATTGAGCATTTTGGTGACATGCAT
GTTGGTGGTGAAGAAGGCGGGCGCGCAGCAAAAGAGAAAACTCTTGAGAT
GACTGCTGGGCAAAGCTTGACCGCGGAACAGTTGAAAATGATGCTGCACG
CGGAGCCGGGCATTTTTAGGATGCCCTTTCAAGAAAAGACGCAAGAACAG
TTTAAATTCTGGAGTACCCAACCCGTATTGAGATTAGATGAGGATCGCAA
GGAGAACGGGCCTATCGAGACAGGAAAGACACCGGCAGATGTGCGCCAGG
AGCCTTATAATTTGCCCGAGGGCTTTACATGGTGCGAGGTGGACATGAGG
GATGGGCAAGAAGCAAAAGAGGTGTACGACCTCTTAAATCAAAACTATGT
GGAGGATGACGACAACATGTTTCGCTTTAATTACTCTCCCGCCTTTTTGG
AATGGGCACTAACACCTCCCGGAAGTCAAAAAGACTTTGTTGTTGGGATC
CGCGTTGACCCGTCTGCGGCGGCTGTGACCAAGGGCAAAAGTCGGCGGAA
GCTCGTAGGCTTTATCACTGGCGTGCCTGTCCAGATGCGTGTTCACGATA
AAGTCATGCCAATGGTTGAGATAAATTTCTTGTGCGTCTTAAAGAAATTA
CGCTCCAAGCGTTTGGCTCCTGTGCTTATCAAGGAGATAACCCGGCGGGT
GAACTTGACGGGGGTGTGGCAGGCCGTTTACACGGCGGGCGTTGTCCTTC
CCAGGCCCGTTGCTCGATGCAGGTACTATCACAGGTTGATACGACCCAAG
AAACTCGTGGAGATTGGGTTCACAAGACTCGCCCCACGCATGACAATGGC
TCGTACAATACGCCTCTATCAACTCCCTGATGTATGCGCGAGTGGTATCC
GGCCTATGACGCTCGCAGACGTGCCATCTGCACGGAAGTTGCTCAACACT
TACCTGGAAGCCTTCAAGCTGGCCCCCGTCATGGATGATGCAGACTTGGC
GCATTGGCTGTTGCCACGCCCAAATGTCGTCGACAGTTTCGTGGTTACTA
AGGAGGGTTGCGTCACGGATATGTGCAGCTTCTACCACCTGCACTCCACC
GTGATTGATAATACCGCATACCCTTCACTCAACGCTGTCTATTCATTCTA
CAACGTAGCCACCACTATGTCTCTGACGTCACTTATGAGGGAGGCGTTAA
TTCTAGCCAAACAAAGAGACGTGGACGTCTTCAACGCGCTCGACCTGATG
GAGAACCAGCTCTTCCTGAAAGAGCTCAAATTCGGGCATGGCGACGGAGT
GCTGCATTACTATCTCTACAACTGGGGCTGCGCAGACATTGAGCCCGCGC
ACGTAGGGCTTGTTCTTCTGTGAGATGCGGAACTCGCATCTTATTTTGCA
ATTTGATATACACAGACATGACTTGGAAAGTAAAAGCAAGCTGGGTATCG
GCGTTACAAGAAATACCAGGCCTCTGGTGATGTATTACACTCAAAAAATT
AAAAGGTGGTAGAGACAATCATGCATATGCATTGTCTTTTGCCTAATGAG
GAAATTTCGAGGTGTTCTTCAGAAAAAATCTTATTCCCGTTTTTCGGCCC
TAATTTTCCCTTGTAGTGCCTGATCCTCTTTTCGAGCCTCATCTTGAAGC
TGTCGTAAATTGTATTTCTTTAATTCAATGAAACGAGGGCAAATGCCGAC
GCCGATAGTTCCCTACGTCACGTTGAGTAAGTGGGTGAAACTTAAAGTCA
GCTGATTGCTTGAAAGCATTGTCATCAGTTAGAAGCGCATGCATAAAATC
GAGCAGACACATTTTTTTTGCTCATACAAGTAGAGAAGACACGTTTCTTT
TGCTGACCTTGATGGCTTCAACGAGGAGGACATAGTCGGGACAGGTTAGA
TCCACCTTCCAACGACCACCAATCACATCTCCAAGAGTCTTGAAAATCTC
GTCGCGTGAGTGCGCCGCATAGTTGCGTCGACATAAACTCACCATGTACT
GTGAGTAAAGATGCTTAATAAGATACGCGAACATGCCACATACTTCCATT
CATGCATTTATAAC back to topprotein sequence of rna2500 >rna2500-protein ID=rna2500-protein|Name=rna2500|organism=Nannochloropsis gaditana|type=polypeptide|length=197bp
MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEAKTGQSSTRGIIKLMP
LERICFGGNLEALKREARDLLLEKGLIVEKEEHAEKASGQIGLESERKAV
DSSSRPTYMVSLCRRNYAAHSRDEIFKTLGDVIGGRWKVDLTCPDYVLLV
EAIKGTIGVGICPRFIELKKYNLRQLQDEARKEDQALQGKIRAEKRE back to topmRNA from alignment at CM002459.1:527405..529423- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2500 ID=rna2500|Name=rna2500|organism=Nannochloropsis gaditana|type=mRNA|length=2019bp|location=Sequence derived from alignment at CM002459.1:527405..529423- (Nannochloropsis gaditana)
AAGTGCTGACGTGCTGACGGAAAAGCCTGCAGAACATAAAAAGGTCCGGG
ACGACCACGCTGGGAGCGTGCGCACGTCGGACGTGCTAGAAGGCGAGGCA
GCTCGAAGGCCCGAGCCCCGCCATGCCCACCCCCTGCGAACTCCTTCCTG
CCCGAAGCTTTCCTCACCATTTACGCCCCGCTTTTAGCATTTTATTTTAA
ATTCGATTTGACAAAAACACAGTGCTGCAACATGGCTGACAAGAGAAATG
GGTCTACGAAGCGGGCATCGGTAAGTCATCGGAGTCAGGAAAGGGTAGGA
GGTTGAGCACATGCTCAGATGACCGGCAGCTAATACCTTAACCGCGTACG
ACATACCATCGCGACACAGAGGAGAGGTGACGAGAAATCAGGAAGTATTG
GAGAAAGGAAGCGCCCGCGTTACCAATCATCACCGTGGTCCTCGTCGTTG
TCAGCGGTGCGAAATGGGCAAGCCATCCTTTTTACTTGCGACGTCGGTCG
GGAAGCTAAAGCGGCCAAAGAGCTGTCCATTGTACTGGAAAGGGCAAGTA
TCCCCTCTATGCGAGAATAGGAACTAAGGTTTATGAAAATTTGCCTTCCC
GCTCCCGTCTGAGCGTTGCCCGTATACACGGCAGTGAACGAGAAATGAGC
TCTACTCTCACTACAATTTATTTTGTTGCTTCGTTAAACAAATTCGCAAT
GACAGCAACAAGTTATTTGCCTGATGGTCTCTATTCTGAAAGATGCTCTT
TCAGGACGGAGTGCTTTCTCATGACACGCGTCTTGTCCTCTTTTATAATT
TCACACGTAGTATGCAGAGGATGCCCGGAGTCCCAGTGGGGGCCCTCTCG
GTGGGGCGTCCGACAAAGACCAAACCTTCCCAGTGGGCACGGAAAATGTG
ACACTAGCTTCAGGAGATGAAGGAGCAGGGGAAGGCACCATTCGGGACAC
GCTTGAACAGGAAATAGCAGACTTGAAGGAAAAAACAAAGTCGGGGGCAA
GGTCGACTATGGTGCCCATAGAGACAGGATGTAGAGGCACCTGTGGAGTC
AGCATTCCTAAAGATGGCCCTTTATCACCCGTTAAAGCCTGCATTCGGAT
GCTGGAGGAAGCGAAGACTGGGCAAAGCAGTACTCGGTGAGTATTTCGGG
TTTTTGCTTCATCTTGTCTGATGGGTTAGCCTTCAAACCAACCTTTCATA
TCTATTTACGAACATAGCGGCATTATCAAACTGATGCCACTGGAAAGAAT
TTGTTTTGGCGGAAATTTGGAGGCACTCAAACGAGAAGCTCGTGATTTGC
TATTGGAAAAAGGTCTGATTGTAGAGAAGGAGGAACACGCGGAAAAAGCA
TCTGGACAGATAGGATTGGAAAGTGAAAGGAAAGCTGTGGATTCAAGCAG
CAGGCCAACTGTAAGTTATAAATGCATGAATGGAAGTATGTGGCATGTTC
GCGTATCTTATTAAGCATCTTTACTCACAGTACATGGTGAGTTTATGTCG
ACGCAACTATGCGGCGCACTCACGCGACGAGATTTTCAAGACTCTTGGAG
ATGTGATTGGTGGTCGTTGGAAGGTGGATCTAACCTGTCCCGACTATGTC
CTCCTCGTTGAAGCCATCAAGGTCAGCAAAAGAAACGTGTCTTCTCTACT
TGTATGAGCAAAAAAAATGTGTCTGCTCGATTTTATGCATGCGCTTCTAA
CTGATGACAATGCTTTCAAGCAATCAGCTGACTTTAAGTTTCACCCACTT
ACTCAACGTGACGTAGGGAACTATCGGCGTCGGCATTTGCCCTCGTTTCA
TTGAATTAAAGAAATACAATTTACGACAGCTTCAAGATGAGGCTCGAAAA
GAGGATCAGGCACTACAAGGGAAAATTAGGGCCGAAAAACGGGAATAAGA
TTTTTTCTGAAGAACACCTCGAAATTTCCTCATTAGGCAAAAGACAATGC
ATATGCATGATTGTCTCTACCACCTTTTAATTTTTTGAGTGTAATACATC
ACCAGAGGCCTGGTATTTC back to topCoding sequence (CDS) from alignment at CM002459.1:527405..529423- >rna2500 ID=rna2500|Name=rna2500|organism=Nannochloropsis gaditana|type=CDS|length=2376bp|location=Sequence derived from alignment at CM002459.1:527405..529423- (Nannochloropsis gaditana)
GGAACTATCGGCGTCGGCATTTGCCCTCGTTTCATTGAATTAAAGAAATA
CAATTTACGACAGCTTCAAGATGAGGCTCGAAAAGAGGATCAGGCACTAC
AAGGGAAAATTAGGGCCGAAAAACGGGAATAATACATGGTGAGTTTATGT
CGACGCAACTATGCGGCGCACTCACGCGACGAGATTTTCAAGACTCTTGG
AGATGTGATTGGTGGTCGTTGGAAGGTGGATCTAACCTGTCCCGACTATG
TCCTCCTCGTTGAAGCCATCAAGCGGCATTATCAAACTGATGCCACTGGA
AAGAATTTGTTTTGGCGGAAATTTGGAGGCACTCAAACGAGAAGCTCGTG
ATTTGCTATTGGAAAAAGGTCTGATTGTAGAGAAGGAGGAACACGCGGAA
AAAGCATCTGGACAGATAGGATTGGAAAGTGAAAGGAAAGCTGTGGATTC
AAGCAGCAGGCCAACTATGGTGCCCATAGAGACAGGATGTAGAGGCACCT
GTGGAGTCAGCATTCCTAAAGATGGCCCTTTATCACCCGTTAAAGCCTGC
ATTCGGATGCTGGAGGAAGCGAAGACTGGGCAAAGCAGTACTCGGGAACT
ATCGGCGTCGGCATTTGCCCTCGTTTCATTGAATTAAAGAAATACAATTT
ACGACAGCTTCAAGATGAGGCTCGAAAAGAGGATCAGGCACTACAAGGGA
AAATTAGGGCCGAAAAACGGGAATAATACATGGTGAGTTTATGTCGACGC
AACTATGCGGCGCACTCACGCGACGAGATTTTCAAGACTCTTGGAGATGT
GATTGGTGGTCGTTGGAAGGTGGATCTAACCTGTCCCGACTATGTCCTCC
TCGTTGAAGCCATCAAGCGGCATTATCAAACTGATGCCACTGGAAAGAAT
TTGTTTTGGCGGAAATTTGGAGGCACTCAAACGAGAAGCTCGTGATTTGC
TATTGGAAAAAGGTCTGATTGTAGAGAAGGAGGAACACGCGGAAAAAGCA
TCTGGACAGATAGGATTGGAAAGTGAAAGGAAAGCTGTGGATTCAAGCAG
CAGGCCAACTATGGTGCCCATAGAGACAGGATGTAGAGGCACCTGTGGAG
TCAGCATTCCTAAAGATGGCCCTTTATCACCCGTTAAAGCCTGCATTCGG
ATGCTGGAGGAAGCGAAGACTGGGCAAAGCAGTACTCGGGAACTATCGGC
GTCGGCATTTGCCCTCGTTTCATTGAATTAAAGAAATACAATTTACGACA
GCTTCAAGATGAGGCTCGAAAAGAGGATCAGGCACTACAAGGGAAAATTA
GGGCCGAAAAACGGGAATAATACATGGTGAGTTTATGTCGACGCAACTAT
GCGGCGCACTCACGCGACGAGATTTTCAAGACTCTTGGAGATGTGATTGG
TGGTCGTTGGAAGGTGGATCTAACCTGTCCCGACTATGTCCTCCTCGTTG
AAGCCATCAAGCGGCATTATCAAACTGATGCCACTGGAAAGAATTTGTTT
TGGCGGAAATTTGGAGGCACTCAAACGAGAAGCTCGTGATTTGCTATTGG
AAAAAGGTCTGATTGTAGAGAAGGAGGAACACGCGGAAAAAGCATCTGGA
CAGATAGGATTGGAAAGTGAAAGGAAAGCTGTGGATTCAAGCAGCAGGCC
AACTATGGTGCCCATAGAGACAGGATGTAGAGGCACCTGTGGAGTCAGCA
TTCCTAAAGATGGCCCTTTATCACCCGTTAAAGCCTGCATTCGGATGCTG
GAGGAAGCGAAGACTGGGCAAAGCAGTACTCGGGAACTATCGGCGTCGGC
ATTTGCCCTCGTTTCATTGAATTAAAGAAATACAATTTACGACAGCTTCA
AGATGAGGCTCGAAAAGAGGATCAGGCACTACAAGGGAAAATTAGGGCCG
AAAAACGGGAATAATACATGGTGAGTTTATGTCGACGCAACTATGCGGCG
CACTCACGCGACGAGATTTTCAAGACTCTTGGAGATGTGATTGGTGGTCG
TTGGAAGGTGGATCTAACCTGTCCCGACTATGTCCTCCTCGTTGAAGCCA
TCAAGCGGCATTATCAAACTGATGCCACTGGAAAGAATTTGTTTTGGCGG
AAATTTGGAGGCACTCAAACGAGAAGCTCGTGATTTGCTATTGGAAAAAG
GTCTGATTGTAGAGAAGGAGGAACACGCGGAAAAAGCATCTGGACAGATA
GGATTGGAAAGTGAAAGGAAAGCTGTGGATTCAAGCAGCAGGCCAACTAT
GGTGCCCATAGAGACAGGATGTAGAGGCACCTGTGGAGTCAGCATTCCTA
AAGATGGCCCTTTATCACCCGTTAAAGCCTGCATTCGGATGCTGGAGGAA
GCGAAGACTGGGCAAAGCAGTACTCG back to top
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