EWM28292.1, cds2492 (CDS) Nannochloropsis gaditana

Overview
NameEWM28292.1
Unique Namecds2492
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:528288..528415 -
Alignment locationCM002459.1:528014..528206 -
Alignment locationCM002459.1:527803..527943 -
Alignment locationCM002459.1:527526..527657 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28292.1
ProductTHUMP domain-containing protein
Orig transcript idgnl|cribi|Naga_100004g142.9223.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:528288..528415 -
CM002459.1supercontigCM002459.1:528014..528206 -
CM002459.1supercontigCM002459.1:527803..527943 -
CM002459.1supercontigCM002459.1:527526..527657 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR004114THUMP
Homology
BLAST of EWM28292.1 vs. NCBI_GenBank
Match: gi|585110637|gb|EWM28292.1| (THUMP domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 399.053 bits (1024), Expect = 1.274e-140
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query:    1 MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEAKTGQSSTRGIIKLMPLERICFGGNLEALKREARDLLLEKGLIVEKEEHAEKASGQIGLESERKAVDSSSRPTYMVSLCRRNYAAHSRDEIFKTLGDVIGGRWKVDLTCPDYVLLVEAIKGTIGVGICPRFIELKKYNLRQLQDEARKEDQALQGKIRAEKRE 197
            MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEAKTGQSSTRGIIKLMPLERICFGGNLEALKREARDLLLEKGLIVEKEEHAEKASGQIGLESERKAVDSSSRPTYMVSLCRRNYAAHSRDEIFKTLGDVIGGRWKVDLTCPDYVLLVEAIKGTIGVGICPRFIELKKYNLRQLQDEARKEDQALQGKIRAEKRE
Sbjct:    1 MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEAKTGQSSTRGIIKLMPLERICFGGNLEALKREARDLLLEKGLIVEKEEHAEKASGQIGLESERKAVDSSSRPTYMVSLCRRNYAAHSRDEIFKTLGDVIGGRWKVDLTCPDYVLLVEAIKGTIGVGICPRFIELKKYNLRQLQDEARKEDQALQGKIRAEKRE 197          
BLAST of EWM28292.1 vs. NCBI_GenBank
Match: gi|1214665174|gb|OWY93016.1| (hypothetical protein PHMEG_00037736 [Phytophthora megakarya])

HSP 1 Score: 73.9442 bits (180), Expect = 3.363e-12
Identity = 50/180 (27.78%), Postives = 88/180 (48.89%), Query Frame = 0
Query:    1 MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEAK-TGQSSTRGIIKLMPLERICFGGNLEALKREARDLLLEKGLIVEKEEHAEKASGQIGLESERKAVDSSSRPTYMVSLCRRNYAAHSRDEIFKTLGDVIG-GRWKVDLTCPDYVLLVEAIKGTIGVGICPRFIELKKYNLRQLQD 178
               ++TG +G   +   KD  +SP     ++ EE + T   ++R I +++PLE++ +  ++EA+K  A  ++         +EH E        + E+KA D      + V   RRN     R  +  ++ +++G  + KV+LT P  VL+VE  + T G  +   F   KKYN+R + D
Sbjct:  109 FTALDTGVKGAILIQF-KDSNVSPTALMNKIFEEVESTKDFASRFIQRMIPLEKVGYS-SVEAIKELAAPMV---------KEHLE------AFKEEQKAADKDGDFEFAVEFNRRNCTNLDRMSVINSIVELVGEDKTKVNLTTPRSVLMVEVFRNTCGFSVLTEFHRFKKYNVRSIID 271          
BLAST of EWM28292.1 vs. NCBI_GenBank
Match: gi|1214689681|gb|OWZ05173.1| (hypothetical protein PHMEG_00022781 [Phytophthora megakarya])

HSP 1 Score: 73.559 bits (179), Expect = 3.936e-12
Identity = 50/180 (27.78%), Postives = 88/180 (48.89%), Query Frame = 0
Query:    1 MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEAK-TGQSSTRGIIKLMPLERICFGGNLEALKREARDLLLEKGLIVEKEEHAEKASGQIGLESERKAVDSSSRPTYMVSLCRRNYAAHSRDEIFKTLGDVIG-GRWKVDLTCPDYVLLVEAIKGTIGVGICPRFIELKKYNLRQLQD 178
               ++TG +G   +   KD  +SP     ++ EE + T   ++R I +++PLE++ +  ++EA+K  A  ++         +EH E        + E+KA D      + V   RRN     R  +  ++ +++G  + KV+LT P  VL+VE  + T G  +   F   KKYN+R + D
Sbjct:  109 FTALDTGVKGAILIQF-KDSNVSPTALMNKIFEEVESTKDFASRFIQRMIPLEKVGYS-SVEAIKELAAPMV---------KEHLE------AFKEEQKAADKDGDFEFAVEFNRRNCTNLDRMSVINSIVELVGEDKTKVNLTTPRSVLMVEVFRNTCGFSVLTEFHRFKKYNVRSIID 271          
BLAST of EWM28292.1 vs. NCBI_GenBank
Match: gi|1069594184|ref|XP_018170198.1| (hypothetical protein QG37_02506 [[Candida] auris] >gi|908570918|gb|KNE00475.1| hypothetical protein QG37_02506 [[Candida] auris])

HSP 1 Score: 72.7886 bits (177), Expect = 6.512e-12
Identity = 52/189 (27.51%), Postives = 92/189 (48.68%), Query Frame = 0
Query:    1 MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEA-KTGQSSTRGIIKLMPLERICFGGNLEALKREARDLLLEKGLIVEKEEHAEKASGQIGLESERKAVDSSSRPTYMVSLCRRNYAAHSRDEIFKTLGDVIGGRW--KVDLTCPDYVLLVEAIKGTIGVGICPRFIELKKYNLRQLQDEARKEDQA 186
             +PI+ GC   C V I    P+ P +   R+ +EA +  +  TR   KL P+       +++ LK+ A  +L         E H  +  GQ  L+             + + + RRN+    +D+I KT+   +G  +  KVDL   D ++LVE  K  +G+ +   ++ L+K+NL+Q+ ++  KE++A
Sbjct:  100 FLPIDLGCE--CLVFIKIRKPVEPAEFIRRICKEALQLREKQTRFTQKLTPI-TYSVSASIDELKKLAHMVL---------EPHFHQKEGQKALK-------------FAIQVTRRNFNTLEKDDIIKTIATCVGHEYGHKVDLKNYDKLILVECFKNNVGMSVVSEYLPLEKFNLQQIFEKNMKENEA 263          
BLAST of EWM28292.1 vs. NCBI_GenBank
Match: gi|1063242008|gb|ODQ64840.1| (hypothetical protein NADFUDRAFT_47403 [Nadsonia fulvescens var. elongata DSM 6958])

HSP 1 Score: 72.7886 bits (177), Expect = 8.442e-12
Identity = 57/193 (29.53%), Postives = 94/193 (48.70%), Query Frame = 0
Query:    1 MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEAK-TGQSSTRGIIKLMPLERICFGGNLEALKREARDLLLEKGLIVEKEEHAEKASGQIGLESERKAVDSSSRPTYMVSLCRRNYAAHSRDEIFKTLGDVIGGRW--KVDLTCPDYVLLVEAIKGTIGVGIC-PRFIELKKYNLRQL---QDEARKEDQA 186
              PI  GC   C + I    P+ PV   +R+  E K +G   TR   +L+P+  +   GNL+ L + A D++L+                    ES++K    + RP        RN+   +RDE+ + + + +G     KVDL  P+ V+LVE  KG++G+ +  P+F EL +YNL+ +   Q+  + +D A
Sbjct:  125 FTPISVGCE--CVLFIRTRKPVDPVDFSLRLCREMKESGSKRTRYTQRLIPVS-LTATGNLDELSKLA-DIVLKP---------------HFHQESDQKGYKFAIRPQ------NRNHNNMTRDEVIRKVAERVGNEHGHKVDLKHPEKVILVECFKGSVGMSVVDPQFDELDRYNLQTIFEKQNSLKLDDNA 292          
BLAST of EWM28292.1 vs. NCBI_GenBank
Match: gi|695434318|ref|XP_009531396.1| (hypothetical protein PHYSODRAFT_466328, partial [Phytophthora sojae] >gi|348674148|gb|EGZ13967.1| hypothetical protein PHYSODRAFT_466328, partial [Phytophthora sojae])

HSP 1 Score: 70.0922 bits (170), Expect = 5.780e-11
Identity = 49/180 (27.22%), Postives = 88/180 (48.89%), Query Frame = 0
Query:    1 MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEAK-TGQSSTRGIIKLMPLERICFGGNLEALKREARDLLLEKGLIVEKEEHAEKASGQIGLESERKAVDSSSRPTYMVSLCRRNYAAHSRDEIFKTLGDVIG-GRWKVDLTCPDYVLLVEAIKGTIGVGICPRFIELKKYNLRQLQD 178
              P++TG +G   +   KD  +SP     ++ E+ + T   ++R I+++ PLE++ +  ++EA+K  A  ++         + H E        + E+KA  +     + V   RRN    +  ++   L +++G  + KV+LT P  VLL+E  + T G  I   F   KKYN+R + D
Sbjct:  114 FTPLDTGVKGAILIQF-KDDTISPTALLSKIFEQVESTKDFASRFIMRMTPLEKVGYS-SVEAIKELAAPMI---------KTHLE------AFKEEQKAAGTDEPLEFAVEFKRRNCTNLNSMDVINGLVELVGEDKTKVNLTTPRSVLLIEVFRNTCGFSILTDFHRFKKYNVRSVID 276          
BLAST of EWM28292.1 vs. NCBI_GenBank
Match: gi|566021878|gb|ETI44789.1| (hypothetical protein F443_10544 [Phytophthora parasitica P1569] >gi|570982594|gb|ETP42655.1| hypothetical protein F442_10440 [Phytophthora parasitica P10297])

HSP 1 Score: 70.0922 bits (170), Expect = 6.387e-11
Identity = 49/180 (27.22%), Postives = 88/180 (48.89%), Query Frame = 0
Query:    1 MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEAKTGQS-STRGIIKLMPLERICFGGNLEALKREARDLLLEKGLIVEKEEHAEKASGQIGLESERKAVDSSSRPTYMVSLCRRNYAAHSRDEIFKTLGDVIG-GRWKVDLTCPDYVLLVEAIKGTIGVGICPRFIELKKYNLRQLQD 178
               ++TG +G   +   KD  +SP     ++ EE ++ +  ++R I +++PLE++ +  ++EA+K  A  ++         + H E        ++ERKA        + V   RRN    +  ++   L +++G  + KV+LT P  VL+VE  + T G  I   F   KKYN+R + D
Sbjct:  113 FTALDTGVKGAVLIQF-KDDNVSPTALLSKIFEEVESSKDFASRFIQRMIPLEKVGYS-SVEAIKELAAPMI---------KAHLE------AFKAERKAAGKDEDFEFAVDFKRRNCTNLNSMDVINALVELVGEDKTKVNLTTPRSVLMVEVFRNTCGFSILTDFHRFKKYNVRSIID 275          
BLAST of EWM28292.1 vs. NCBI_GenBank
Match: gi|1183364065|gb|ORX90736.1| (thump-domain-containing protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 69.707 bits (169), Expect = 6.513e-11
Identity = 50/181 (27.62%), Postives = 88/181 (48.62%), Query Frame = 0
Query:   12 CGVSIPKDGPLSPVKACIRMLEEAK-TGQSSTRGIIKLMPLERICFGGNLEALKREARDLLLEKGLIVEKEEHAEKASGQIGLESERKAVDSSSRP-TYMVSLCRRNYAAHSRDEIFKTLGDVIGGRWKVDLTCPDYVLLVEAIKGTIGVGICPRFIELKKYNLRQLQDEARKEDQALQGK 190
            C V I    P+ P      +L++ K TG   TR  ++L+P+   C+  N+  ++  A+ LL            A    G+            +  P TY +    RN +   RDE+ K++  ++G + KV+L  PD+V+++E  K   G+ +   + ELKK+NL Q+  E+ K+ +A++ K
Sbjct:  117 CVVFIKTKEPIVPTDLAAYILKDLKETGVKKTRFALRLIPISNTCYA-NMSDIEAAAKKLL------------APHFHGE------------NQEPVTYAIVPKIRNNSKIDRDELIKSVAGLVGDKHKVNLEKPDFVIIIEIFKSICGISVVKDYYELKKFNL-QVLFESLKQPKAVEDK 271          
BLAST of EWM28292.1 vs. NCBI_GenBank
Match: gi|301107283|ref|XP_002902724.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262098598|gb|EEY56650.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 69.707 bits (169), Expect = 1.047e-10
Identity = 52/180 (28.89%), Postives = 86/180 (47.78%), Query Frame = 0
Query:    1 MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEAK-TGQSSTRGIIKLMPLERICFGGNLEALKREARDLLLEKGLIVEKEEHAEKASGQIGLESERKAVDSSSRPTYMVSLCRRNYAAHSRDEIFKTLGDVIGG-RWKVDLTCPDYVLLVEAIKGTIGVGICPRFIELKKYNLRQLQD 178
               ++TG +G   +   KD  LSP     ++ EE + T   ++R I +++PLE++ +  ++EA+K  A  ++         + H E        + E+KA        + V   RRN       ++  TL D++G  + KV+LT P  VL+VE  + T G  I   F   KKYN+R + D
Sbjct:  112 FTALDTGVKGAVLIQF-KDDRLSPTALLSKVFEEVESTKDFASRFIQRMIPLEKVGYS-SVEAIKELAGPMI---------KAHLE------AFKDEQKAAGKDETFEFAVEFKRRNCTNLISMDVIDTLVDLVGEEKTKVNLTAPRSVLMVEVFRNTCGFSILTDFHRFKKYNVRSIID 274          
BLAST of EWM28292.1 vs. NCBI_GenBank
Match: gi|567987887|gb|ETL38178.1| (hypothetical protein L916_10206 [Phytophthora parasitica])

HSP 1 Score: 68.9366 bits (167), Expect = 1.882e-10
Identity = 48/180 (26.67%), Postives = 88/180 (48.89%), Query Frame = 0
Query:    1 MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEAKTGQS-STRGIIKLMPLERICFGGNLEALKREARDLLLEKGLIVEKEEHAEKASGQIGLESERKAVDSSSRPTYMVSLCRRNYAAHSRDEIFKTLGDVIG-GRWKVDLTCPDYVLLVEAIKGTIGVGICPRFIELKKYNLRQLQD 178
               ++TG +G   +   KD  +SP     ++ EE ++ +  ++R I +++PLE++ +  ++EA+K  A  ++         + H E        ++E+KA        + V   RRN    +  ++   L +++G  + KV+LT P  VL+VE  + T G  I   F   KKYN+R + D
Sbjct:  113 FTALDTGVKGAVLIQF-KDDNVSPTALLSKIFEEVESSKDFASRFIQRMIPLEKVGYS-SVEAIKELAAPMI---------KAHLE------AFKAEQKAAGKDEDFEFAVDFKRRNCTNLNSMDVINALVELVGEDKTKVNLTTPRSVLMVEVFRNTCGFSILTDFHRFKKYNVRSIID 275          
The following BLAST results are available for this feature:
BLAST of EWM28292.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110637|gb|EWM28292.1|1.274e-140100.00THUMP domain-containing protein [Nannochloropsis g... [more]
gi|1214665174|gb|OWY93016.1|3.363e-1227.78hypothetical protein PHMEG_00037736 [Phytophthora ... [more]
gi|1214689681|gb|OWZ05173.1|3.936e-1227.78hypothetical protein PHMEG_00022781 [Phytophthora ... [more]
gi|1069594184|ref|XP_018170198.1|6.512e-1227.51hypothetical protein QG37_02506 [[Candida] auris] ... [more]
gi|1063242008|gb|ODQ64840.1|8.442e-1229.53hypothetical protein NADFUDRAFT_47403 [Nadsonia fu... [more]
gi|695434318|ref|XP_009531396.1|5.780e-1127.22hypothetical protein PHYSODRAFT_466328, partial [P... [more]
gi|566021878|gb|ETI44789.1|6.387e-1127.22hypothetical protein F443_10544 [Phytophthora para... [more]
gi|1183364065|gb|ORX90736.1|6.513e-1127.62thump-domain-containing protein [Basidiobolus meri... [more]
gi|301107283|ref|XP_002902724.1|1.047e-1028.89conserved hypothetical protein [Phytophthora infes... [more]
gi|567987887|gb|ETL38178.1|1.882e-1026.67hypothetical protein L916_10206 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2500rna2500Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications