rna250, rna250 (mRNA) Nannochloropsis gaditana

Overview
Namerna250
Unique Namerna250
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length959
Alignment locationCM002455.1:631996..633678 -

Link to JBrowse

Properties
Property NameValue
Productca2 :cation antiporter family
Orig transcript idgnl|cribi|Naga_100210g10.8077.mrna
Orig protein idgnl|cribi|Naga_100210g10.8077
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:631996..633678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100210g10gene239Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna250rna250-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30429.1cds250Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna250 ID=rna250|Name=rna250|organism=Nannochloropsis gaditana|type=mRNA|length=959bp
CGGACGGGGCGAGGGCTCCTCCTTCGAGCTCAGAGCGCTTGAGGGCGTGC
GGTACAGCTAGCCGACTGCGATCTCGTTCGAGAACCAACTCAAAAACCAA
TTCACATCGTGCATCTACACTAGGTACAATTCAACTATGGCTTCCACCGA
CATGTCCATCCAGCATGGCGAAATTGTCTTCTTGCACGAGCTGGTCCGAT
CTCCTGAACCCTACCGGCGGACACGAGAACGATCAGTACGGGTGACCGGG
CGTTGTGTTCACGTCGACACTCATCAAAAGAGACTAATCATTCAAGACCG
ATCTAACCGCCTGACTGTTAATATTGAACTGATAGCGGATCAACTATTTG
CAATAGATGGCCTGTATCAATTTATCGGGGAGCTCCGGGAAGAGAGGGGG
GAGGTTGTGATGGGAGGTACTACTGATGATAGCTGCACAGTTTTACGGGC
TCGCGTAGCTCGAGCAGTCGATGGTCTAGATATGTCATTGTATGAGCAGT
CCGTGCGCCTGCGCCGGGCATTCTTAGAAAGGCACGGGTTGGGCCAAGGC
AAATAGGTGTATGAGGGGAGAGGCTGCATCGAAGAGCAAAGACTAAAGAA
GGCTTGAAACAGGAAATATCGATCCACTGTGCAAAGTCAAGTCAATGTAC
AGAGTGTTACGTTTCTCAAGGATACAATGCTTCGAGATCGTATCCTCATG
CGCTGATTGCACGTGTTGCATCATCTTGTAGCTTGATTTCGATTTCCGTC
ACCACAACATAGGGAAACACACCAAACCCTGCCCTGCCTCCCACACTGCC
ACGCCTGCCAAACCCAGCTCCCGTGATAAGGCGAATCTTCTTTTAAAGAA
GGCGGGGGTGGGGTACGTGGCTCGGACCTCCTCGCCAGCCTCCTCGCCAT
GTGAGGCCGAGTAGACAAACACGTGCTCCTGAGTATCTTCGTCCCACCAC
ACGCGCCGC
back to top

protein sequence of rna250

>rna250-protein ID=rna250-protein|Name=rna250|organism=Nannochloropsis gaditana|type=polypeptide|length=427bp
MQRAKVKKKPTQQTVPLSSCPSETKAISNTKFWHFAIIAALMISLIVTTV
TIVPLNWRQFGTRHNAIFETNDFTLAHLQNCAQSDAVLEQPPEQRPQEVL
AYTTPWNRQGFAVAETYAHKLTFLSPVWYQLRAPQLQRNDYDGRGLELTG
GHEFNNTWLRNVRNKSKNRVRIVPRVIWEVPAFVLPTQVPIITQLLAEEA
RDRGFDGYTLEFPVDEHGIFAELTRSLKNALSEAIPLLSSPTLIVAIPAF
QMPTRPQTPPEYHVTPRLLLTLAPHVSRFSLMTYDYAQTPSGAPISPLPW
VMRTVEMLSNREGEQGKADARILRGKMLLGLPWYGYAGGQAITGHEFQKN
VLDRAEHVRRVWWDEDTQEHVFVYSASHGEEAGEEVRATYPTPAFFKRRF
ALSRELGLAGVAVWEAGQGLVCFPMLW
back to top

mRNA from alignment at CM002455.1:631996..633678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna250 ID=rna250|Name=rna250|organism=Nannochloropsis gaditana|type=mRNA|length=1683bp|location=Sequence derived from alignment at CM002455.1:631996..633678- (Nannochloropsis gaditana)
CATCACATGCTCAGCCCTACAGATCAACCTCCCTGGAAAACGCACTTTGT
TCGTTCAACCATTTCAAAACCTCATGGTTTCGTGCCAAAAACACACCGCG
ATAGAGGTTCGAATATCTGCGGCGCCAAAGGAGAAGATCCCAGATGCAGC
GAGCCAAAGTCAAGAAAAAGCCCACCCAGCAGACTGTACCACTTTCATCA
TGTCCGTCTGAAACGAAAGCTATTTCAAACACGAAATTTTGGCATTTCGC
TATCATAGCCGCCCTTATGATCTCCCTTATTGTCACCACTGTAACTATTG
TCCCGCTAAATTGGCGCCAATTCGGCACACGGCATAATGCAATCTTCGAG
ACAAATGATTTCACCTTGGCCCATCTTCAAAATTGCGCTCAATCGGATGC
CGTATTAGAGCAGCCCCCAGAGCAACGACCACAAGAAGTACTTGCCTATA
CAACACCTTGGAATCGGCAAGGTTTTGCCGTTGCAGAGACTTACGCCCAC
AAGTTGACCTTTTTGAGTCCAGTATGGTATCAGCTGAGGGCACCCCAGCT
TCAGCGGAATGACTATGACGGGAGGGGTTTAGAATTGACAGGTGGACACG
AATTTAACAATACTTGGCTCCGTAATGTGCGCAATAAGTCCAAAAATCGT
GTGCGTATCGTACCCCGGGTCATATGGGAAGTTCCTGCATTTGTGCTGCC
CACCCAGGTACCCATTATTACCCAGCTCTTGGCAGAAGAGGCAAGGGACA
GAGGTTTTGACGGGTGAGTCATATTACGAATGTTTTTTTGTGTTTTTTGA
TGCTTCAATTAAAAAATGAAAGTAGGCAGGCCTATTCTCCCCGCACCAGC
GAAGATGTGCCATTATTGGTCCTTCCAGTCCTCACCCTCTTCTCCCCATT
TCCTTCCCAGCTACACGCTTGAGTTTCCTGTCGACGAGCATGGCATCTTC
GCTGAACTTACAAGGTCCCTTAAGAATGCGCTCTCAGAGGCGATTCCACT
CTTATCCTCCCCCACGCTCATCGTAGCCATTCCTGCCTTCCAGATGCCCA
CGCGCCCCCAGACTCCTCCTGAATATCACGTCACACCCAGACTTCTTCTC
ACCCTTGCGCCGCACGTGTCACGCTTTTCGCTCATGACGTACGACTACGC
TCAGACACCCTCTGGCGCCCCGATTAGCCCTTTACCATGGGTAATGAGGA
CAGTAGAGATGCTCTCTAATAGGGAAGGAGAGCAGGGGAAAGCGGACGCG
AGGATCCTCCGGGGCAAAATGCTCTTGGGACTGCCCTGGTACGGGTATGC
AGGTGGCCAGGCAATAACTGGGCATGAATTTCAAAAGAATGTCCTGGATA
GGGCAGAGCACGTGCGGCGCGTGTGGTGGGACGAAGATACTCAGGAGCAC
GTGTTTGTCTACTCGGCCTCACATGGCGAGGAGGCTGGCGAGGAGGTCCG
AGCCACGTACCCCACCCCCGCCTTCTTTAAAAGAAGATTCGCCTTATCAC
GGGAGCTGGGTTTGGCAGGCGTGGCAGTGTGGGAGGCAGGGCAGGGTTTG
GTGTGTTTCCCTATGTTGTGGTGACGGAAATCGAAATCAAGCTACAAGAT
GATGCAACACGTGCAATCAGCGCATGAGGATACGATCTCGAAGCATTGTA
TCCTTGAGAAACGTAACACTCTGTACATTGACT
back to top

Coding sequence (CDS) from alignment at CM002455.1:631996..633678-

>rna250 ID=rna250|Name=rna250|organism=Nannochloropsis gaditana|type=CDS|length=2568bp|location=Sequence derived from alignment at CM002455.1:631996..633678- (Nannochloropsis gaditana)
CTACACGCTTGAGTTTCCTGTCGACGAGCATGGCATCTTCGCTGAACTTA
CAAGGTCCCTTAAGAATGCGCTCTCAGAGGCGATTCCACTCTTATCCTCC
CCCACGCTCATCGTAGCCATTCCTGCCTTCCAGATGCCCACGCGCCCCCA
GACTCCTCCTGAATATCACGTCACACCCAGACTTCTTCTCACCCTTGCGC
CGCACGTGTCACGCTTTTCGCTCATGACGTACGACTACGCTCAGACACCC
TCTGGCGCCCCGATTAGCCCTTTACCATGGGTAATGAGGACAGTAGAGAT
GCTCTCTAATAGGGAAGGAGAGCAGGGGAAAGCGGACGCGAGGATCCTCC
GGGGCAAAATGCTCTTGGGACTGCCCTGGTACGGGTATGCAGGTGGCCAG
GCAATAACTGGGCATGAATTTCAAAAGAATGTCCTGGATAGGGCAGAGCA
CGTGCGGCGCGTGTGGTGGGACGAAGATACTCAGGAGCACGTGTTTGTCT
ACTCGGCCTCACATGGCGAGGAGGCTGGCGAGGAGGTCCGAGCCACGTAC
CCCACCCCCGCCTTCTTTAAAAGAAGATTCGCCTTATCACGGGAGCTGGG
TTTGGCAGGCGTGGCAGTGTGGGAGGCAGGGCAGGGTTTGGTGTGTTTCC
CTATGTTGTGGTGAATGCAGCGAGCCAAAGTCAAGAAAAAGCCCACCCAG
CAGACTGTACCACTTTCATCATGTCCGTCTGAAACGAAAGCTATTTCAAA
CACGAAATTTTGGCATTTCGCTATCATAGCCGCCCTTATGATCTCCCTTA
TTGTCACCACTGTAACTATTGTCCCGCTAAATTGGCGCCAATTCGGCACA
CGGCATAATGCAATCTTCGAGACAAATGATTTCACCTTGGCCCATCTTCA
AAATTGCGCTCAATCGGATGCCGTATTAGAGCAGCCCCCAGAGCAACGAC
CACAAGAAGTACTTGCCTATACAACACCTTGGAATCGGCAAGGTTTTGCC
GTTGCAGAGACTTACGCCCACAAGTTGACCTTTTTGAGTCCAGTATGGTA
TCAGCTGAGGGCACCCCAGCTTCAGCGGAATGACTATGACGGGAGGGGTT
TAGAATTGACAGGTGGACACGAATTTAACAATACTTGGCTCCGTAATGTG
CGCAATAAGTCCAAAAATCGTGTGCGTATCGTACCCCGGGTCATATGGGA
AGTTCCTGCATTTGTGCTGCCCACCCAGGTACCCATTATTACCCAGCTCT
TGGCAGAAGAGGCAAGGGACAGAGGTTTTGACGGCTACACGCTTGAGTTT
CCTGTCGACGAGCATGGCATCTTCGCTGAACTTACAAGGTCCCTTAAGAA
TGCGCTCTCAGAGGCGATTCCACTCTTATCCTCCCCCACGCTCATCGTAG
CCATTCCTGCCTTCCAGATGCCCACGCGCCCCCAGACTCCTCCTGAATAT
CACGTCACACCCAGACTTCTTCTCACCCTTGCGCCGCACGTGTCACGCTT
TTCGCTCATGACGTACGACTACGCTCAGACACCCTCTGGCGCCCCGATTA
GCCCTTTACCATGGGTAATGAGGACAGTAGAGATGCTCTCTAATAGGGAA
GGAGAGCAGGGGAAAGCGGACGCGAGGATCCTCCGGGGCAAAATGCTCTT
GGGACTGCCCTGGTACGGGTATGCAGGTGGCCAGGCAATAACTGGGCATG
AATTTCAAAAGAATGTCCTGGATAGGGCAGAGCACGTGCGGCGCGTGTGG
TGGGACGAAGATACTCAGGAGCACGTGTTTGTCTACTCGGCCTCACATGG
CGAGGAGGCTGGCGAGGAGGTCCGAGCCACGTACCCCACCCCCGCCTTCT
TTAAAAGAAGATTCGCCTTATCACGGGAGCTGGGTTTGGCAGGCGTGGCA
GTGTGGGAGGCAGGGCAGGGTTTGGTGTGTTTCCCTATGTTGTGGTGAAT
GCAGCGAGCCAAAGTCAAGAAAAAGCCCACCCAGCAGACTGTACCACTTT
CATCATGTCCGTCTGAAACGAAAGCTATTTCAAACACGAAATTTTGGCAT
TTCGCTATCATAGCCGCCCTTATGATCTCCCTTATTGTCACCACTGTAAC
TATTGTCCCGCTAAATTGGCGCCAATTCGGCACACGGCATAATGCAATCT
TCGAGACAAATGATTTCACCTTGGCCCATCTTCAAAATTGCGCTCAATCG
GATGCCGTATTAGAGCAGCCCCCAGAGCAACGACCACAAGAAGTACTTGC
CTATACAACACCTTGGAATCGGCAAGGTTTTGCCGTTGCAGAGACTTACG
CCCACAAGTTGACCTTTTTGAGTCCAGTATGGTATCAGCTGAGGGCACCC
CAGCTTCAGCGGAATGACTATGACGGGAGGGGTTTAGAATTGACAGGTGG
ACACGAATTTAACAATACTTGGCTCCGTAATGTGCGCAATAAGTCCAAAA
ATCGTGTGCGTATCGTACCCCGGGTCATATGGGAAGTTCCTGCATTTGTG
CTGCCCACCCAGGTACCCATTATTACCCAGCTCTTGGCAGAAGAGGCAAG
GGACAGAGGTTTTGACGG
back to top
Synonyms
Publications