rna25, rna25 (mRNA) Nannochloropsis gaditana

Overview
Namerna25
Unique Namerna25
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length898
Alignment locationCM002455.1:83385..83989 -

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Properties
Property NameValue
ProductSurvival motor neuron
Orig transcript idgnl|cribi|Naga_100786g1.2396.mrna
Orig protein idgnl|cribi|Naga_100786g1.2396
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:83385..83989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100786g1gene23Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna25rna25-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30648.1cds25Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna25 ID=rna25|Name=rna25|organism=Nannochloropsis gaditana|type=mRNA|length=898bp
AAGAAGACAGGATGAAGGAGAAAGCGCAGCAAGGAGACATGCACCCGGGC
GAGGAAAAAAAAGGAAATTCAGACAGGGAGGAGGAGGGTTTCTGGGGGGA
AGAAGCTATCCAACTCACCCATCTCGCTCCATCGTACCGAAACAGAGAAA
AATTACAGATTTCGAGTAGCGACCGTCCCTCCCTCCTCCCCCGTTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCCTCCCTGCCTCCAC
CCCGTCTACCCCCGACTTGCGCCGGCGTCCGCTGATCCTCCCTCCCTTCC
TTCTCCCCCCGGCCCGTCGCGTGCGGGCATTGCAGGCGTCGACTACGTGA
TGAGGGAGAAAGAATACAAGACCATGGCCTTTGAACTCGCCGTCCGCCGC
TTCGAGGAGCTTCGACCGGTCTTGGAACGCTTGAACGAGCTGGAGGTCCG
GCAGGTAAGCTTCCCCCGCCCCTGCCTCCCCCCATCCCTCCCTCCCTTCT
CTTTCCTGAGGGTAACGAAAAAAGGAGGACGGGCGGCTCTGTCTGGGTCA
GAGTGCGTCACAATCCGTGCGTGGAGGTGGAGGCAGGGACCCCAAGAGAA
GAGGACAGGGCGAGGGACGAAGCAGCACAGGCTTGGAGGGAGGGTGTCTT
GCTCCTGGGACTTCTGTCATGCTTGCTTGTATACATGTATGCACACCAAC
GCATTCATCCCTTTTCTGTCGTTCTCTCTTCCCTCGCTCCTTTCTTCCAT
TCTCTCCCCCTCTCCCCCCCCCCTACCTGCGCTCCACCTCCAGCGGGCGA
TGGAGGAAAAGCTCGCCGAACGGGCAGCAGGCAAATCGGCCAAGGGAGGG
AAGGCCGCGAAAATGTCTCAAAAAGAAAGAGAGAAGAAGCGCCGGTAG
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protein sequence of rna25

>rna25-protein ID=rna25-protein|Name=rna25|organism=Nannochloropsis gaditana|type=polypeptide|length=99bp
MYSSGMVFGNTNGHAGTTYHAEADSNTWDDSAIINAFDLAVSSHGQAGRH
ATERGEEEEGRGAEGGSQGGNGRGNRSRAHSCGLAGNKPGREAGGKGRG
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mRNA from alignment at CM002455.1:83385..83989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna25 ID=rna25|Name=rna25|organism=Nannochloropsis gaditana|type=mRNA|length=605bp|location=Sequence derived from alignment at CM002455.1:83385..83989- (Nannochloropsis gaditana)
ATGTATTCCTCTGGAATGGTGTTTGGAAATACCAATGGTCATGCGGGTAC
CACCTATCATGCAGAAGCGGATTCAAATACGTGGGACGACAGCGCCATTA
TCAATGTGAGTGCAACGCGTCAAGCGGGCCAGGGCGACGATATCCTGAGA
GCTCCTTCAGGTTGGGAACGGCTCGCAGTCCTTTCAACAGCAAAATGGCA
TCCATCACGTATTTTTTGCTATCATTCACAGGCTTTTGATCTAGCGGTCT
CCAGTCATGGGCAAGCAGGGAGGCATGCGACGGAAAGGTATCAAGGACAG
CACCCGTCGCATCCAATATCACGAGGCAGACGACGGAGGGGAGGTGGAGG
GAGAGGAGGTGGAGGGGAAGAAGATGCCACAAGAAGGGGAGGGGAAGTTG
GGGAAGATGGTGGGGGAGGAGGAGGTCTGTCCGTGGAGGATCGCTTTTTC
AATCTCCTCGAGGCAGGGGCGAGGAGGAAGAAGGGCGAGGGGCAGAGGGC
GGCAGCCAAGGAGGGAACGGAAGGGGGAACAGATCAAGAGCACACTCTTG
TGGACTTGCCGGAAACAAGCCAGGAAGAGAGGCCGGAGGAAAAGGAAGAG
GGTGA
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Coding sequence (CDS) from alignment at CM002455.1:83385..83989-

>rna25 ID=rna25|Name=rna25|organism=Nannochloropsis gaditana|type=CDS|length=900bp|location=Sequence derived from alignment at CM002455.1:83385..83989- (Nannochloropsis gaditana)
GGGCGAGGAGGAAGAAGGGCGAGGGGCAGAGGGCGGCAGCCAAGGAGGGA
ACGGAAGGGGGAACAGATCAAGAGCACACTCTTGTGGACTTGCCGGAAAC
AAGCCAGGAAGAGAGGCCGGAGGAAAAGGAAGAGGGTGAGCTTTTGATCT
AGCGGTCTCCAGTCATGGGCAAGCAGGGAGGCATGCGACGGAAAGATGTA
TTCCTCTGGAATGGTGTTTGGAAATACCAATGGTCATGCGGGTACCACCT
ATCATGCAGAAGCGGATTCAAATACGTGGGACGACAGCGCCATTATCAAT
GGGCGAGGAGGAAGAAGGGCGAGGGGCAGAGGGCGGCAGCCAAGGAGGGA
ACGGAAGGGGGAACAGATCAAGAGCACACTCTTGTGGACTTGCCGGAAAC
AAGCCAGGAAGAGAGGCCGGAGGAAAAGGAAGAGGGTGAGCTTTTGATCT
AGCGGTCTCCAGTCATGGGCAAGCAGGGAGGCATGCGACGGAAAGATGTA
TTCCTCTGGAATGGTGTTTGGAAATACCAATGGTCATGCGGGTACCACCT
ATCATGCAGAAGCGGATTCAAATACGTGGGACGACAGCGCCATTATCAAT
GGGCGAGGAGGAAGAAGGGCGAGGGGCAGAGGGCGGCAGCCAAGGAGGGA
ACGGAAGGGGGAACAGATCAAGAGCACACTCTTGTGGACTTGCCGGAAAC
AAGCCAGGAAGAGAGGCCGGAGGAAAAGGAAGAGGGTGAGCTTTTGATCT
AGCGGTCTCCAGTCATGGGCAAGCAGGGAGGCATGCGACGGAAAGATGTA
TTCCTCTGGAATGGTGTTTGGAAATACCAATGGTCATGCGGGTACCACCT
ATCATGCAGAAGCGGATTCAAATACGTGGGACGACAGCGCCATTATCAAT
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Synonyms
Publications