EWM30648.1, cds25 (CDS) Nannochloropsis gaditana

Overview
NameEWM30648.1
Unique Namecds25
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:83885..83989 -
Alignment locationCM002455.1:83703..83758 -
Alignment locationCM002455.1:83385..83523 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30648.1
ProductSurvival motor neuron
Orig transcript idgnl|cribi|Naga_100786g1.2396.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:83885..83989 -
CM002455.1supercontigCM002455.1:83703..83758 -
CM002455.1supercontigCM002455.1:83385..83523 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006397mRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR010304Survival_motor_neuron
Homology
[Close]
BLAST of EWM30648.1 vs. NCBI_GenBank
Match: gi|585113340|gb|EWM30648.1| (Survival motor neuron [Nannochloropsis gaditana])

HSP 1 Score: 196.438 bits (498), Expect = 1.307e-63
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 
Query:    1 MYSSGMVFGNTNGHAGTTYHAEADSNTWDDSAIINAFDLAVSSHGQAGRHATERGEEEEGRGAEGGSQGGNGRGNRSRAHSCGLAGNKPGREAGGKGRG 99
            MYSSGMVFGNTNGHAGTTYHAEADSNTWDDSAIINAFDLAVSSHGQAGRHATERGEEEEGRGAEGGSQGGNGRGNRSRAHSCGLAGNKPGREAGGKGRG
Sbjct:    1 MYSSGMVFGNTNGHAGTTYHAEADSNTWDDSAIINAFDLAVSSHGQAGRHATERGEEEEGRGAEGGSQGGNGRGNRSRAHSCGLAGNKPGREAGGKGRG 99
[Close]
BLAST of EWM30648.1 vs. NCBI_GenBank
Match: gi|553187244|ref|XP_005854570.1| (hypothetical protein NGA_0225700 [Nannochloropsis gaditana CCMP526] >gi|422294486|gb|EKU21786.1| hypothetical protein NGA_0225700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 78.5666 bits (192), Expect = 1.730e-15
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 
Query:    1 MYSSGMVFGNTNGHAGTTYHAEADSNTWDDSAIIN 35
            MYSSGMVFGNTNGHAGTTYHAEADSNTWDDSAIIN
Sbjct:    1 MYSSGMVFGNTNGHAGTTYHAEADSNTWDDSAIIN 35
The following BLAST results are available for this feature:
BLAST of EWM30648.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585113340|gb|EWM30648.1|1.307e-63100.00Survival motor neuron [Nannochloropsis gaditana][more]
gi|553187244|ref|XP_005854570.1|1.730e-15100.00hypothetical protein NGA_0225700 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna25rna25Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications