rna2498, rna2498 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2498
Unique Name	rna2498
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1942
Alignment location	CM002459.1:522117..524294 +

Link to JBrowse

Properties


Property Name	Value
Product	cys met metabolism pyridoxal-phosphate-dependent enzyme
Orig transcript id	gnl\|cribi\|Naga_100004g140.9137.mrna
Orig protein id	gnl\|cribi\|Naga_100004g140.9137
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:522117..524294 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g140	gene2388	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2498	rna2498-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28206.1	cds2490	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:522117..524294+
coding sequence from alignment at CM002459.1:522117..524294+

mRNA sequence

>rna2498 ID=rna2498|Name=rna2498|organism=Nannochloropsis gaditana|type=mRNA|length=1942bp
CTGGAAAAGGATCAAGCTATCTATCAAGCACCATTCGTCTCTGAAGCTTG
GGACGCGTATAATTAAAGTTCCCGCAACAGCTAGGATTAGGAGGCAGATT
GGAAATGACTGAAGTTCTCGCAGTGCACGGTGCTTTGAACGTACGTTGGA
TAAAATATGTCTATATCCATTCAGCTTTGCACAACAGTATATCGCGCGAA
AACTGTTAAAAATGACAGTGACACAAAATCAGGAGGGTAATTTGATGGCC
AACAGTCGAGTCTACCTGCTCTGGCAGAGGCGACAGCGGGCCGGGCGGGA
GCTTGGCAGGCCGGCTAAAAGCTTCTTCTTTGAAGAGGACGAAACTCACA
CATCATATGTACATGTTGCGTACCATTACTATGATAAATACAAACAGGCG
ATGTTCGATGTCACTGGTCTCGAGGTCGTGATTTTGATAGGAGCGGCTTC
CTTTCTTCTTGGGAAAAAGGAGGTCCCTCAGCTAGCGCGGATAGTAGGAC
GAGGGACAGGAAAGCTAGTGGCTTTGTTGAACACAGCACGGGAGCAATTC
GTTGATGCCACGCAGAATACGCACCTTTCGAAGCTTACTGATGAAGTTCG
ACAGAACATGAATGAGCTTAATTCAATCCGCTCGGAAGTACGGGCGGCAG
GTTTGCGGCCAAGCCGACGTATGCCTACGTCAGAAGCCGTAAGCAAGCTC
ACCAGTCCCCTTCAGCCGGAAAAGGAGATGAGCAGCTTTCCAAAGCCTTC
CGCTTCGTCATGCGGTAAGCAAGAAGGCAGCTCTTTTTTTTTAGGAAAGA
GCTCGGGCAGTAAATTCTCGAAGATTGACCTTGACAAAAAGAGAAAGCTC
GGTGAGCTTGCGATCGCAGAGCTCTTGTTGCAGGAATCAGTGCTGGGAAA
AGAGGGAGGGACGTTGTGTAGAAGTCAAAAGAAGCTTGTCGTAAGTCCAC
ATGCAAAGGCTGGCTCCGCTGTCTTGGATGACGTCATTTTCGAGAATTTG
CTGTGGAACCAGATGGACCACACTCTTAAGATAAATGAGGGAGGAAAAGT
ACCCGACGTACCACCACAAAAAGACTGTGCGACTTAATTTGTATCGAATT
TAGCACATTTGAAGCACGTAAATTAAACAAATGAGTTGATGCAAATTGGC
ATGTCGGCAGAATTCAACAGCAAAGCTTTCTCGTGTGCTGGTTGTTTGGG
TAGGTAACGATGTTCTCATTTTATGTGCGTTTCCATTTACTTAAACTCTC
CATGAGACAACTCAATGCGAAGTGTACACCAACACTTAGCGTGTGCAGAA
TAAAACATGCTCCAGCTTGCACTAGGCGATAGTATCGTTTAAATGGGGCA
AGGGCTGGAGGAGGAGAAGTCATAGTGGCGACGTTTATGCCGGTGTAAAT
TCCCCATGGCAGCAGCAGCCACCAATGATAGGCTGACAACAGGAGAAAGG
AAAAATAATTCCAGCTCCAACTCCGGTAAAGCGGCCGATGGACCTTGCTT
ATGGCGAATATGGGAGCTGACACGAGTAGTAAGTGCTGCAAGTGGAAGAA
GAGTACCTCCAATGGCGTAGCGGGGTAATTTGGGAAACAGAAAGCCAGAG
ATGGTCCCCATGTGAGCAAACTCAAAGCATGGAAACAAATAAACGAAGAA
TAACATGGAACAACAGTACATACGAAGTATAAAACCGTCGTGACATGGCA
GGGTTGCAGAAAATAGGCAGGATGCGATGGTAGCTTTTTGACGTCGAGTT
TAAGCGGAACCTGAAGAACGAACGTCATAAGTAAGGCGTAGCTCCATAGG
ACTTGAAGTTTGGTAGGCGTGTATGTTATTCTCAAGGCCCGCACTTGCTT
CTCCATGTTCTTCCATGCAGACAGTAGTAAAGGGCCGAATAACAAGACAG
AGATAACTATTTCGACAGCGTGTTGGAAAGGCGAGGAATGCC

protein sequence of rna2498

>rna2498-protein ID=rna2498-protein|Name=rna2498|organism=Nannochloropsis gaditana|type=polypeptide|length=515bp
MFSCENKIASIVLLLACFITCVAYMPVPLFRRSFFSSSYGFPSPALHGMG
LRVKERGAHALQFIMRQGSSTVLDNDASAKEIVEEARARLRPAFDDVDSR
TQRILKRVLKSFRKQQVGTHMFNGIDGYGHGDVGRDSLEEIYAQLFGAEA
ALVRVQIFSGTHAISCALFGVLRPGDKMLGLSGQPYDTLEEVIGTRETHK
DEDDNSIPNQRFLTGSLEEWGVAYDQVDLLPSVAPGQYFNLSEIDRQIDA
DVNIRVLHIQRSCGYQWRPSIPVAEIGNVIAHIRAVFPDRELIVFVDNCY
GEFVEDLEPTHVGADIIAGSLIKNPGGTLAPTGGYIIGKKHYVDAAFKRL
SAPGVEGGATLGQNRWLLQGLFMAPSVVGESLKGAMLLAEVMGSGFGLPC
NPAPGTYRTDIIQAVQVGSRDRVLQFCHQVQRLSPIGAYIRPTAGVSPGY
GDEVVFAVGTFVDGSTLELSADGPLREPFTVFSQGCIHWTHWALVLEEAL
VQMGFCKNSAIDVDF

mRNA from alignment at CM002459.1:522117..524294+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2498 ID=rna2498|Name=rna2498|organism=Nannochloropsis gaditana|type=mRNA|length=2178bp|location=Sequence derived from alignment at CM002459.1:522117..524294+ (Nannochloropsis gaditana)
TGTGCATCTTGCAGATTATGTAAAACGTAGTATTCGATTGTAAGATTATC
TCTCTAGGGTGAACCTTGCGACTTGAAGGCAACTGCGACTCAGTATTTCC
TAAACAACTCATACATCCTGCAGGAACAGATGTTTTCATGCGAAAATAAG
ATAGCATCAATTGTACTTCTATTAGCATGTTTTATCACTTGCGTGGCTTA
CATGCCTGTACCCCTTTTCCGAAGAagtttcttctcctcttcatacGGTT
TCCCTTCACCTGCTCTGCATGGTATGGGCCTACGAGTAAAAGAGCGAGGA
GCGCATGCCCTTCAATTTATAATGCGGCAGGGATCGTCTACTGTTTTAGA
TAATGATGCATCGGCTAAAGAAATCGTAGAGGAGGCGCGTGCACGGTTGA
GGCCTGCATTTGACGACGTTGATAGCCGTACTCAACGTATCTTGAAGCGT
GTGCTCAAGTCTTTCCGGAAGCAGCAGGTTGGGACACACATGTTCAATGG
CATCGATGGGTATGGACATGGAGATGTCGGTCGGGACAGTTTGGAAGAGA
TTTACGCGCAGCTTTTTGGAGCGGAGGCCGCCCTCGTCCGTGTGCAGATC
TTTAGCGGGACCCATGCCATTTCATGCGCTCTATTCGGTGTCCTCCGGCC
AGGGGATAAAATGCTGGGTTTAAGTGGACAGCCGTATGATacgttggagg
aggtgatcgGCACACGAGAAACTCATAAGGATGAAGATGATAATTCTATT
CCAAATCAGCGATTTCTTACGGGAAGTCTGGAAGAGTGGGGTGTGGCGTA
CGATCAGGTTGACCTTCTACCATCCGTAGCTCCCGGCCAGTACTTCAATC
TCTCTGAGATAGATCGACAAATAGACGCCGATGTCAATATCCGAGTTCTG
CACATCCAGCGCTCGTGTGGATATCAGTGGCGGCCATCAATTCCTGTCGC
CGAAATCGGTAACGTCATTGCCCATATTCGAGCTGTTTTTCCGGATCGAG
AGCTCATCGTTTTTGTCGATAATTGCTATGGGGAATTTGTTGAAGATTTG
GAGCCTACTCATGTGGGTGCAGATATTATAGCGGGTTCTTTGATAAAGGT
GCGACAGGGGTCATCAATTTTGCGACGAATAGAAAGAGGTTTCAAATGCG
AAGATGTCCGTATACTTTAGCTAAAAAGATGTGATTCAAAATGCATGCCT
TCATTTAACGGCCCTTTACATGCGATGATCAAACGATAGGAATCTTGCAC
TCAAAAACTTACATAGCACATCTATCGTCATTGTAGAACCCCGGGGGCAC
GCTAGCCCCTACAGGCGGGTACATTATTGGCAAAAAACATTACGTCGACG
CAGCTTTCAAGCGGCTAAGCGCGCCAGGTGTGGAAGGGGGTGCGACACTT
GGCCAGAACCGTTGGCTTCTTCAGGGTCTTTTTATGGCGCCATCAGTAGT
AGGAGAGTCTTTGAAAGGAGCAATGCTTCTCGCAGAGGTGATGGGCAGCG
GATTCGGACTTCCGTGCAACCCTGCCCCCGGCACCTATCGGACTGATATC
ATTCAAGCCGTGCAAGTCGGTAGTCGTGACCGAGTTTTACAATTTTGTCA
CCAGGTGCAGCGGTTGAGTCCGATTGGGGCTTACATTCGGCCTACAGCGG
GCGTATCGCCAGGTTACGGTGATGAAGTGGTCTTTGCGGTAGGGACATTT
GTGGATGGGAGTACATTGGAGCTTAGTGCGGATGGGCCTCTGCGAGAACC
CTTCACAGTTTTTTCACAAGGTTGCATACATTGGACACACTGGGCTCTAG
TACTTGAAGAAGCCCTCGTCCAGATGGGATTTTGCAAAAATAGTGCAATC
GACGTCGATTTCTGAATGCCCGTGCAAGAAGGGAACAATTGTCTACTAAT
CCTTTTTCTTAACCCAAGAAGTAAATCCGTTGCTTTAGTAAATTGTTTTC
TTGTTAACCATTTGACATTAGATGCGTCTgtaaaaggagaaaggcgtcAT
GATGTGATGGCTTGAGAGTATCGTGAGGCAAGTTGTGTGCACTGGCATTC
ACGTGTATGATTGAGCATATTAGATAGGTTGTCGCTGACGTCTTTCCGTT
AAGTACACCACACCATGCAGAAATAATAATTATAAGTAATCAACATCTGG
TTTGTCCATCAACTCATACCCGCAAACA

Coding sequence (CDS) from alignment at CM002459.1:522117..524294+

>rna2498 ID=rna2498|Name=rna2498|organism=Nannochloropsis gaditana|type=CDS|length=3096bp|location=Sequence derived from alignment at CM002459.1:522117..524294+ (Nannochloropsis gaditana)
ATGTTTTCATGCGAAAATAAGATAGCATCAATTGTACTTCTATTAGCATG
TTTTATCACTTGCGTGGCTTACATGCCTGTACCCCTTTTCCGAAGAagtt
tcttctcctcttcatacGGTTTCCCTTCACCTGCTCTGCATGGTATGGGC
CTACGAGTAAAAGAGCGAGGAGCGCATGCCCTTCAATTTATAATGCGGCA
GGGATCGTCTACTGTTTTAGATAATGATGCATCGGCTAAAGAAATCGTAG
AGGAGGCGCGTGCACGGTTGAGGCCTGCATTTGACGACGTTGATAGCCGT
ACTCAACGTATCTTGAAGCGTGTGCTCAAGTCTTTCCGGAAGCAGCAGGT
TGGGACACACATGTTCAATGGCATCGATGGGTATGGACATGGAGATGTCG
GTCGGGACAGTTTGGAAGAGATTTACGCGCAGCTTTTTGGAGCGGAGGCC
GCCCTCGTCCGTGTGCAGATCTTTAGCGGGACCCATGCCATTTCATGCGC
TCTATTCGGTGTCCTCCGGCCAGGGGATAAAATGCTGGGTTTAAGTGGAC
AGCCGTATGATacgttggaggaggtgatcgGCACACGAGAAACTCATAAG
GATGAAGATGATAATTCTATTCCAAATCAGCGATTTCTTACGGGAAGTCT
GGAAGAGTGGGGTGTGGCGTACGATCAGGTTGACCTTCTACCATCCGTAG
CTCCCGGCCAGTACTTCAATCTCTCTGAGATAGATCGACAAATAGACGCC
GATGTCAATATCCGAGTTCTGCACATCCAGCGCTCGTGTGGATATCAGTG
GCGGCCATCAATTCCTGTCGCCGAAATCGGTAACGTCATTGCCCATATTC
GAGCTGTTTTTCCGGATCGAGAGCTCATCGTTTTTGTCGATAATTGCTAT
GGGGAATTTGTTGAAGATTTGGAGCCTACTCATGTGGGTGCAGATATTAT
AGCGGGTTCTTTGATAAAGAACCCCGGGGGCACGCTAGCCCCTACAGGCG
GGTACATTATTGGCAAAAAACATTACGTCGACGCAGCTTTCAAGCGGCTA
AGCGCGCCAGGTGTGGAAGGGGGTGCGACACTTGGCCAGAACCGTTGGCT
TCTTCAGGGTCTTTTTATGGCGCCATCAGTAGTAGGAGAGTCTTTGAAAG
GAGCAATGCTTCTCGCAGAGGTGATGGGCAGCGGATTCGGACTTCCGTGC
AACCCTGCCCCCGGCACCTATCGGACTGATATCATTCAAGCCGTGCAAGT
CGGTAGTCGTGACCGAGTTTTACAATTTTGTCACCAGGTGCAGCGGTTGA
GTCCGATTGGGGCTTACATTCGGCCTACAGCGGGCGTATCGCCAGGTTAC
GGTGATGAAGTGGTCTTTGCGGTAGGGACATTTGTGGATGGGAGTACATT
GGAGCTTAGTGCGGATGGGCCTCTGCGAGAACCCTTCACAGTTTTTTCAC
AAGGTTGCATACATTGGACACACTGGGCTCTAGTACTTGAAGAAGCCCTC
GTCCAGATGGGATTTTGCAAAAATAGTGCAATCGACGTCGATTTCTGAAT
GTTTTCATGCGAAAATAAGATAGCATCAATTGTACTTCTATTAGCATGTT
TTATCACTTGCGTGGCTTACATGCCTGTACCCCTTTTCCGAAGAagtttc
ttctcctcttcatacGGTTTCCCTTCACCTGCTCTGCATGGTATGGGCCT
ACGAGTAAAAGAGCGAGGAGCGCATGCCCTTCAATTTATAATGCGGCAGG
GATCGTCTACTGTTTTAGATAATGATGCATCGGCTAAAGAAATCGTAGAG
GAGGCGCGTGCACGGTTGAGGCCTGCATTTGACGACGTTGATAGCCGTAC
TCAACGTATCTTGAAGCGTGTGCTCAAGTCTTTCCGGAAGCAGCAGGTTG
GGACACACATGTTCAATGGCATCGATGGGTATGGACATGGAGATGTCGGT
CGGGACAGTTTGGAAGAGATTTACGCGCAGCTTTTTGGAGCGGAGGCCGC
CCTCGTCCGTGTGCAGATCTTTAGCGGGACCCATGCCATTTCATGCGCTC
TATTCGGTGTCCTCCGGCCAGGGGATAAAATGCTGGGTTTAAGTGGACAG
CCGTATGATacgttggaggaggtgatcgGCACACGAGAAACTCATAAGGA
TGAAGATGATAATTCTATTCCAAATCAGCGATTTCTTACGGGAAGTCTGG
AAGAGTGGGGTGTGGCGTACGATCAGGTTGACCTTCTACCATCCGTAGCT
CCCGGCCAGTACTTCAATCTCTCTGAGATAGATCGACAAATAGACGCCGA
TGTCAATATCCGAGTTCTGCACATCCAGCGCTCGTGTGGATATCAGTGGC
GGCCATCAATTCCTGTCGCCGAAATCGGTAACGTCATTGCCCATATTCGA
GCTGTTTTTCCGGATCGAGAGCTCATCGTTTTTGTCGATAATTGCTATGG
GGAATTTGTTGAAGATTTGGAGCCTACTCATGTGGGTGCAGATATTATAG
CGGGTTCTTTGATAAAGAACCCCGGGGGCACGCTAGCCCCTACAGGCGGG
TACATTATTGGCAAAAAACATTACGTCGACGCAGCTTTCAAGCGGCTAAG
CGCGCCAGGTGTGGAAGGGGGTGCGACACTTGGCCAGAACCGTTGGCTTC
TTCAGGGTCTTTTTATGGCGCCATCAGTAGTAGGAGAGTCTTTGAAAGGA
GCAATGCTTCTCGCAGAGGTGATGGGCAGCGGATTCGGACTTCCGTGCAA
CCCTGCCCCCGGCACCTATCGGACTGATATCATTCAAGCCGTGCAAGTCG
GTAGTCGTGACCGAGTTTTACAATTTTGTCACCAGGTGCAGCGGTTGAGT
CCGATTGGGGCTTACATTCGGCCTACAGCGGGCGTATCGCCAGGTTACGG
TGATGAAGTGGTCTTTGCGGTAGGGACATTTGTGGATGGGAGTACATTGG
AGCTTAGTGCGGATGGGCCTCTGCGAGAACCCTTCACAGTTTTTTCACAA
GGTTGCATACATTGGACACACTGGGCTCTAGTACTTGAAGAAGCCCTCGT
CCAGATGGGATTTTGCAAAAATAGTGCAATCGACGTCGATTTCTGA

Synonyms

Publications