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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100004g139.9110.mrna |
| Orig protein id | gnl|cribi|Naga_100004g139.9110 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:519835..522093 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2497 ID=rna2497|Name=rna2497|organism=Nannochloropsis gaditana|type=mRNA|length=1957bp
AGATGCACATGAAGAATGTGAATTAAAAAATGCTGGAAAAGGATCAAGCT
ATCTATCAAGCACCATTCGTCTCTGAAGCTTGGGACGCGTATAATTAAAG
TTCCCGCAACAGCTAGGATTAGGAGGCAGATTGGAAATGACTGAAGTTCT
CGCAGTGCACGGTGCTTTGAACGCGATGTTCGATGTCACTGGTCTCGAGG
TCGTGATTTTGATAGGAGCGGCTTCCTTTCTTCTTGGTAAGGACCTCGTG
TGTTTCTACTCCCATCTTTGTCCTTTTGACTCTTCACATTTTACGCTTTT
TCCAGGGAAAAAGGAGGTCCCTCAGCTAGCGCGGATAGTAGGACGAGGGA
CAGGAAAGCTAGTGGCTTTGTTGAACACAGCACGGGAGCAATTCGTTGAT
GCCACGCAGAATACGCACCTTTCGAAGCTTACTGATGAAGTTCGACAGAA
CATGAATGAGCTTAATTCAATCCGCTCGGAAGTACGGGCGGCAGGTTTGC
GGCCAAGCCGACGTATGCCTACGTCAGAAGCCGTAAGCAAGCTCACCAGT
CCCCTTCAGCCGGAAAAGGAGATGAGCAGCTTTCCAAAGCCTTCCGCTTC
GTCATGCGGTAAGCAAGAAGGCAGCTCTTTTTTTTTAGGAAAGAGCTCGG
GCAGTAAATTCTCGAAGATTGACCTTGACAAAAAGAGAAAGCTCGGTGAG
CTTGCGATCGCAGAGCTCTTGTTGCAGGTATGATGTGAGCGATGTCACCA
TTTGTGTCTTTCCCCGGGATATGCATGATGTGTGGGAATTTACCTGGCAA
AAATATTTTTCATCCTATTCTCTGCTGGATAAGAAAAAATCGACTTGCTG
TGGTGTTAGTTTAAATTTTTCTACATAATTCGTTCTCGACCTGTACAGGA
ATCAGTGCTGGGAAAAGAGGGAGGGACGTTGTGTAGAAGTCAAAAGAAGC
TTGTCGTAAGTCCACATGCAAAGGCTGGCTCCGCTGTCTTGGATGACGTC
ATTTTCGAGAATTTGCTGTGGAACCAGATGGACCACACTCTTAAGATAAA
TGAGGGAGGAAAAGTACCCGACGTACCACCACAAAAAGACTGTGCGACTT
AATTTGTATCGAATTTAGCACATTTGAAGCACGTAAATTAAACAAATGAG
TTGATGCAAATTGGCATGTCGGCAGAATTCAACAGCAAAGCTTTCTCGTG
TGCTGGTTGTTTGGGTAGGTAACGATGTTCTCATTTTATGTGCGTTTCCA
TTTACTTAAACTCTCCATGAGACAACTCAATGCGAAGTGTACACCAACAC
TTAGCGTGTGCAGAATAAAACATGCTCCAGCTTGCACTAGGCGATAGTAT
CGTTTAAATGGGGCAAGGGCTGGAGGAGGAGAAGTCATAGTGGCGACGTT
TATGCCGGTGTAAATTCCCCATGGCAGCAGCAGCCACCAATGATAGGCTG
ACAACAGGAGAAAGGAAAAATAATTCCAGCTCCAACTCCGGTAAAGCGGC
CGATGGACCTTGCTTATGGCGAATATGGGAGCTGACACGAGTAGTAAGTG
CTGCAAGTGGAAGAAGAGTACCTCCAATGGCGTAGCGGGGTAATTTGGGA
AACAGAAAGCCAGAGATGGTCCCCATGTGAGCAAACTCAAAGCATGGAAA
CAAATAAACGAAGAATAACATGGAACAACAGTACATACGAAGTATAAAAC
CGTCGTGACATGGCAGGGTTGCAGAAAATAGGCAGGATGCGATGGTAGCT
TTTTGACGTCGAGTTTAAGCGGAACCTGAAGAACGAACGTCATAAGTAAG
GCGTAGCTCCATAGGACTTGAAGTTTGGTAGGCGTGTATGTTATTCTCAA
GGCCCGCACTTGCTTCTCCATGTTCTTCCATGCAGACAGTAGTAAAGGGC
CGAATAACAAGACAGAGATAACTATTTCGACAGCGTGTTGGAAAGGCGAG
GAATGCC back to topprotein sequence of rna2497 >rna2497-protein ID=rna2497-protein|Name=rna2497|organism=Nannochloropsis gaditana|type=polypeptide|length=291bp
MTVTQNQEGNLMANSRVYLLWQRRQRAGRELGRPAKSFFFEEDETHTSYV
HVAYHYYDKYKQAMFDVTGLEVVILIGAASFLLGKKEVPQLARIVGRGTG
KLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRP
SRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGS
KFSKIDLDKKRKLGELAIAELLLQESVLGKEGGTLCRSQKKLVVSPHAKA
GSAVLDDVIFENLLWNQMDHTLKINEGGKVPDVPPQKDCAT back to topmRNA from alignment at CM002459.1:519835..522093- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2497 ID=rna2497|Name=rna2497|organism=Nannochloropsis gaditana|type=mRNA|length=2259bp|location=Sequence derived from alignment at CM002459.1:519835..522093- (Nannochloropsis gaditana)
CTGGAAAAGGATCAAGCTATCTATCAAGCACCATTCGTCTCTGAAGCTTG
GGACGCGTATAATTAAAGTTCCCGCAACAGCTAGGATTAGGAGGCAGATT
GGAAATGACTGAAGTTCTCGCAGTGCACGGTGCTTTGAACGTACGTTGGA
TAAAATATGTCTATATCCATTCAGCTTTGCACAACAGTATATCGCGCGAA
AACTGTTAAAAATGACAGTGACACAAAATCAGGAGGGTAATTTGATGGCC
AACAGTCGAGTCTACCTGCTCTGGCAGAGGCGACAGCGGGCCGGGCGGGA
GCTTGGCAGGCCGGCTAAAAGCTTCTTCTTTGAAGAGGACGAAACTCACA
CATCATATGTACATGTTGCGTACCATTACTATGATAAATACAAACAGGCG
ATGTTCGATGTCACTGGTCTCGAGGTCGTGATTTTGATAGGAGCGGCTTC
CTTTCTTCTTGGTAAGGACCTCGTGTGTTTCTACTCCCATCTTTGTCCTT
TTGACTCTTCACATTTTACGCTTTTTCCAGGGAAAAAGGAGGTCCCTCAG
CTAGCGCGGATAGTAGGACGAGGGACAGGAAAGCTAGTGGCTTTGTTGAA
CACAGCACGGGAGCAATTCGTTGATGCCACGCAGAATACGCACCTTTCGA
AGGCAGGTCATATGAAAGAGGGGAGATGACATATAAGCACAGCCATTTAA
CCACAGTGCGTTGCACATGATTTCAACAGCTTACTGATGAAGTTCGACAG
AACATGAATGAGCTTAATTCAATCCGCTCGGAAGTACGGGCGGCAGGTTT
GCGGCCAAGCCGACGTATGCCTACGTCAGAAGCCGTAAGCAAGCTCACCA
GTCCCCTTCAGCCGGAAAAGGAGATGAGCAGCTTTCCAAAGCCTTCCGCT
TCGTCATGCGGTAAGCAAGAAGGCAGCTCTTTTTTTTTAGGAAAGAGCTC
GGGCAGTAAATTCTCGAAGATTGACCTTGACAAAAAGAGAAAGCTCGGTG
AGCTTGCGATCGCAGAGCTCTTGTTGCAGGTATGATGTGAGCGATGTCAC
CATTTGTGTCTTTCCCCGGGATATGCATGATGTGTGGGAATTTACCTGGC
AAAAATATTTTTCATCCTATTCTCTGCTGGATAAGAAAAAATCGACTTGC
TGTGGTGTTAGTTTAAATTTTTCTACATAATTCGTTCTCGACCTGTACAG
GAATCAGTGCTGGGAAAAGAGGGAGGGACGTTGTGTAGAAGTCAAAAGAA
GCTTGTCGTAAGTCCACATGCAAAGGCTGGCTCCGCTGTCTTGGATGACG
TCATTTTCGAGAATTTGCTGTGGAACCAGATGGACCACACTCTTAAGATA
AATGAGGGAGGAAAAGTACCCGACGTACCACCACAAAAAGACTGTGCGAC
TTAATTTGTATCGAATTTAGCACATTTGAAGCACGTAAATTAAACAAATG
AGTTGATGCAAATTGGCATGTCGGCAGAATTCAACAGCAAAGCTTTCTCG
TGTGCTGGTTGTTTGGGTAGGTAACGATGTTCTCATTTTATGTGCGTTTC
CATTTACTTAAACTCTCCATGAGACAACTCAATGCGAAGTGTACACCAAC
ACTTAGCGTGTGCAGAATAAAACATGCTCCAGCTTGCACTAGGCGATAGT
ATCGTTTAAATGGGGCAAGGGCTGGAGGAGGAGAAGTCATAGTGGCGACG
TTTATGCCGGTGTAAATTCCCCATGGCAGCAGCAGCCACCAATGATAGGC
TGACAACAGGAGAAAGGAAAAATAATTCCAGCTCCAACTCCGGTAAAGCG
GCCGATGGACCTTGCTTATGGCGAATATGGGAGCTGACACGAGTAGTAAG
TGCTGCAAGTGGAAGAAGAGTACCTCCAATGGCGTAGCGGGGTAATTTGG
GAAACAGAAAGCCAGAGATGGTCCCCATGTGAGCAAACTCAAAGCATGGA
AACAAATAAACGAAGAATAACATGGAACAACAGTACATACGAAGTATAAA
ACCGTCGTGACATGGCAGGGTTGCAGAAAATAGGCAGGATGCGATGGTAG
CTTTTTGACGTCGAGTTTAAGCGGAACCTGAAGAACGAACGTCATAAGTA
AGGCGTAGCTCCATAGGACTTGAAGTTTGGTAGGCGTGTATGTTATTCTC
AAGGCCCGCACTTGCTTCTCCATGTTCTTCCATGCAGACAGTAGTAAAGG
GCCGAATAACAAGACAGAGATAACTATTTCGACAGCGTGTTGGAAAGGCG
AGGAATGCC back to topCoding sequence (CDS) from alignment at CM002459.1:519835..522093- >rna2497 ID=rna2497|Name=rna2497|organism=Nannochloropsis gaditana|type=CDS|length=3504bp|location=Sequence derived from alignment at CM002459.1:519835..522093- (Nannochloropsis gaditana)
GAATCAGTGCTGGGAAAAGAGGGAGGGACGTTGTGTAGAAGTCAAAAGAA
GCTTGTCGTAAGTCCACATGCAAAGGCTGGCTCCGCTGTCTTGGATGACG
TCATTTTCGAGAATTTGCTGTGGAACCAGATGGACCACACTCTTAAGATA
AATGAGGGAGGAAAAGTACCCGACGTACCACCACAAAAAGACTGTGCGAC
TTAACTTACTGATGAAGTTCGACAGAACATGAATGAGCTTAATTCAATCC
GCTCGGAAGTACGGGCGGCAGGTTTGCGGCCAAGCCGACGTATGCCTACG
TCAGAAGCCGTAAGCAAGCTCACCAGTCCCCTTCAGCCGGAAAAGGAGAT
GAGCAGCTTTCCAAAGCCTTCCGCTTCGTCATGCGGTAAGCAAGAAGGCA
GCTCTTTTTTTTTAGGAAAGAGCTCGGGCAGTAAATTCTCGAAGATTGAC
CTTGACAAAAAGAGAAAGCTCGGTGAGCTTGCGATCGCAGAGCTCTTGTT
GCAGGGAAAAAGGAGGTCCCTCAGCTAGCGCGGATAGTAGGACGAGGGAC
AGGAAAGCTAGTGGCTTTGTTGAACACAGCACGGGAGCAATTCGTTGATG
CCACGCAGAATACGCACCTTTCGAAGATGACAGTGACACAAAATCAGGAG
GGTAATTTGATGGCCAACAGTCGAGTCTACCTGCTCTGGCAGAGGCGACA
GCGGGCCGGGCGGGAGCTTGGCAGGCCGGCTAAAAGCTTCTTCTTTGAAG
AGGACGAAACTCACACATCATATGTACATGTTGCGTACCATTACTATGAT
AAATACAAACAGGCGATGTTCGATGTCACTGGTCTCGAGGTCGTGATTTT
GATAGGAGCGGCTTCCTTTCTTCTTGGAATCAGTGCTGGGAAAAGAGGGA
GGGACGTTGTGTAGAAGTCAAAAGAAGCTTGTCGTAAGTCCACATGCAAA
GGCTGGCTCCGCTGTCTTGGATGACGTCATTTTCGAGAATTTGCTGTGGA
ACCAGATGGACCACACTCTTAAGATAAATGAGGGAGGAAAAGTACCCGAC
GTACCACCACAAAAAGACTGTGCGACTTAACTTACTGATGAAGTTCGACA
GAACATGAATGAGCTTAATTCAATCCGCTCGGAAGTACGGGCGGCAGGTT
TGCGGCCAAGCCGACGTATGCCTACGTCAGAAGCCGTAAGCAAGCTCACC
AGTCCCCTTCAGCCGGAAAAGGAGATGAGCAGCTTTCCAAAGCCTTCCGC
TTCGTCATGCGGTAAGCAAGAAGGCAGCTCTTTTTTTTTAGGAAAGAGCT
CGGGCAGTAAATTCTCGAAGATTGACCTTGACAAAAAGAGAAAGCTCGGT
GAGCTTGCGATCGCAGAGCTCTTGTTGCAGGGAAAAAGGAGGTCCCTCAG
CTAGCGCGGATAGTAGGACGAGGGACAGGAAAGCTAGTGGCTTTGTTGAA
CACAGCACGGGAGCAATTCGTTGATGCCACGCAGAATACGCACCTTTCGA
AGATGACAGTGACACAAAATCAGGAGGGTAATTTGATGGCCAACAGTCGA
GTCTACCTGCTCTGGCAGAGGCGACAGCGGGCCGGGCGGGAGCTTGGCAG
GCCGGCTAAAAGCTTCTTCTTTGAAGAGGACGAAACTCACACATCATATG
TACATGTTGCGTACCATTACTATGATAAATACAAACAGGCGATGTTCGAT
GTCACTGGTCTCGAGGTCGTGATTTTGATAGGAGCGGCTTCCTTTCTTCT
TGGAATCAGTGCTGGGAAAAGAGGGAGGGACGTTGTGTAGAAGTCAAAAG
AAGCTTGTCGTAAGTCCACATGCAAAGGCTGGCTCCGCTGTCTTGGATGA
CGTCATTTTCGAGAATTTGCTGTGGAACCAGATGGACCACACTCTTAAGA
TAAATGAGGGAGGAAAAGTACCCGACGTACCACCACAAAAAGACTGTGCG
ACTTAACTTACTGATGAAGTTCGACAGAACATGAATGAGCTTAATTCAAT
CCGCTCGGAAGTACGGGCGGCAGGTTTGCGGCCAAGCCGACGTATGCCTA
CGTCAGAAGCCGTAAGCAAGCTCACCAGTCCCCTTCAGCCGGAAAAGGAG
ATGAGCAGCTTTCCAAAGCCTTCCGCTTCGTCATGCGGTAAGCAAGAAGG
CAGCTCTTTTTTTTTAGGAAAGAGCTCGGGCAGTAAATTCTCGAAGATTG
ACCTTGACAAAAAGAGAAAGCTCGGTGAGCTTGCGATCGCAGAGCTCTTG
TTGCAGGGAAAAAGGAGGTCCCTCAGCTAGCGCGGATAGTAGGACGAGGG
ACAGGAAAGCTAGTGGCTTTGTTGAACACAGCACGGGAGCAATTCGTTGA
TGCCACGCAGAATACGCACCTTTCGAAGATGACAGTGACACAAAATCAGG
AGGGTAATTTGATGGCCAACAGTCGAGTCTACCTGCTCTGGCAGAGGCGA
CAGCGGGCCGGGCGGGAGCTTGGCAGGCCGGCTAAAAGCTTCTTCTTTGA
AGAGGACGAAACTCACACATCATATGTACATGTTGCGTACCATTACTATG
ATAAATACAAACAGGCGATGTTCGATGTCACTGGTCTCGAGGTCGTGATT
TTGATAGGAGCGGCTTCCTTTCTTCTTGGAATCAGTGCTGGGAAAAGAGG
GAGGGACGTTGTGTAGAAGTCAAAAGAAGCTTGTCGTAAGTCCACATGCA
AAGGCTGGCTCCGCTGTCTTGGATGACGTCATTTTCGAGAATTTGCTGTG
GAACCAGATGGACCACACTCTTAAGATAAATGAGGGAGGAAAAGTACCCG
ACGTACCACCACAAAAAGACTGTGCGACTTAACTTACTGATGAAGTTCGA
CAGAACATGAATGAGCTTAATTCAATCCGCTCGGAAGTACGGGCGGCAGG
TTTGCGGCCAAGCCGACGTATGCCTACGTCAGAAGCCGTAAGCAAGCTCA
CCAGTCCCCTTCAGCCGGAAAAGGAGATGAGCAGCTTTCCAAAGCCTTCC
GCTTCGTCATGCGGTAAGCAAGAAGGCAGCTCTTTTTTTTTAGGAAAGAG
CTCGGGCAGTAAATTCTCGAAGATTGACCTTGACAAAAAGAGAAAGCTCG
GTGAGCTTGCGATCGCAGAGCTCTTGTTGCAGGGAAAAAGGAGGTCCCTC
AGCTAGCGCGGATAGTAGGACGAGGGACAGGAAAGCTAGTGGCTTTGTTG
AACACAGCACGGGAGCAATTCGTTGATGCCACGCAGAATACGCACCTTTC
GAAGATGACAGTGACACAAAATCAGGAGGGTAATTTGATGGCCAACAGTC
GAGTCTACCTGCTCTGGCAGAGGCGACAGCGGGCCGGGCGGGAGCTTGGC
AGGCCGGCTAAAAGCTTCTTCTTTGAAGAGGACGAAACTCACACATCATA
TGTACATGTTGCGTACCATTACTATGATAAATACAAACAGGCGATGTTCG
ATGTCACTGGTCTCGAGGTCGTGATTTTGATAGGAGCGGCTTCCTTTCTT
CTTG back to top
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