EWM28179.1, cds2489 (CDS) Nannochloropsis gaditana

Overview
NameEWM28179.1
Unique Namecds2489
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:521633..521882 -
Alignment locationCM002459.1:521442..521563 -
Alignment locationCM002459.1:521065..521364 -
Alignment locationCM002459.1:520690..520893 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28179.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g139.9110.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:521633..521882 -
CM002459.1supercontigCM002459.1:521442..521563 -
CM002459.1supercontigCM002459.1:521065..521364 -
CM002459.1supercontigCM002459.1:520690..520893 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28179.1 vs. NCBI_GenBank
Match: gi|585110524|gb|EWM28179.1| (hypothetical protein Naga_100004g139 [Nannochloropsis gaditana])

HSP 1 Score: 603.979 bits (1556), Expect = 0.000e+0
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0
Query:    1 MTVTQNQEGNLMANSRVYLLWQRRQRAGRELGRPAKSFFFEEDETHTSYVHVAYHYYDKYKQAMFDVTGLEVVILIGAASFLLGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQESVLGKEGGTLCRSQKKLVVSPHAKAGSAVLDDVIFENLLWNQMDHTLKINEGGKVPDVPPQKDCAT 291
            MTVTQNQEGNLMANSRVYLLWQRRQRAGRELGRPAKSFFFEEDETHTSYVHVAYHYYDKYKQAMFDVTGLEVVILIGAASFLLGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQESVLGKEGGTLCRSQKKLVVSPHAKAGSAVLDDVIFENLLWNQMDHTLKINEGGKVPDVPPQKDCAT
Sbjct:    1 MTVTQNQEGNLMANSRVYLLWQRRQRAGRELGRPAKSFFFEEDETHTSYVHVAYHYYDKYKQAMFDVTGLEVVILIGAASFLLGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQESVLGKEGGTLCRSQKKLVVSPHAKAGSAVLDDVIFENLLWNQMDHTLKINEGGKVPDVPPQKDCAT 291          
BLAST of EWM28179.1 vs. NCBI_GenBank
Match: gi|585110525|gb|EWM28180.1| (hypothetical protein Naga_100004g139 [Nannochloropsis gaditana])

HSP 1 Score: 310.457 bits (794), Expect = 6.349e-104
Identity = 162/185 (87.57%), Postives = 162/185 (87.57%), Query Frame = 0
Query:   63 AMFDVTGLEVVILIGAASFLLGK-----------------------KEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQ 224
            AMFDVTGLEVVILIGAASFLLGK                       KEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQ
Sbjct:   13 AMFDVTGLEVVILIGAASFLLGKDLVCFYSHLCPFDSSHFTLFPGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQ 197          
BLAST of EWM28179.1 vs. NCBI_GenBank
Match: gi|675183657|ref|XP_008900713.1| (hypothetical protein PPTG_08388 [Phytophthora parasitica INRA-310] >gi|566030638|gb|ETI53549.1| hypothetical protein F443_03533 [Phytophthora parasitica P1569] >gi|567968282|gb|ETK93425.1| hypothetical protein L915_03415 [Phytophthora parasitica] >gi|567996732|gb|ETL46834.1| hypothetical protein L916_03368 [Phytophthora parasitica] >gi|568098915|gb|ETN13633.1| hypothetical protein PPTG_08388 [Phytophthora parasitica INRA-310] >gi|570958380|gb|ETP23359.1| hypothetical protein F441_03527 [Phytophthora parasitica CJ01A1] >gi|570994159|gb|ETP51351.1| hypothetical protein F442_03516 [Phytophthora parasitica P10297] >gi|970628991|gb|KUF76407.1| Sulfatase protein [Phytophthora nicotianae])

HSP 1 Score: 75.0998 bits (183), Expect = 1.275e-12
Identity = 60/173 (34.68%), Postives = 94/173 (54.34%), Query Frame = 0
Query:   72 VVILIGAASFLLGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDL---DKKRKLGE--LAIAELLLQES------VLGKEGG 233
            V + +  +SFLLG++E+P++ R VG  +G+ V  +  A+++F DAT++  + KL  E ++ + ELN IRSE+ + G       PTS+AV + T+P      +++   P AS    Q  +S   G+SS S  S  +    D  R+  E  LA+AEL L E       V  +EGG
Sbjct:    7 VFVTVTMSSFLLGRRELPKIGRFVGVYSGRSVGAILRAKKEFFDATKDNDIVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTSDAVPR-TAPRGTANHLAA-AAPGASEPAVQTSTSPAGGRSSVSLASANEYEMQDGVRRSAEASLAMAELKLAEQNKFAPRVESQEGG 177          
BLAST of EWM28179.1 vs. NCBI_GenBank
Match: gi|568056397|gb|ETM53109.1| (hypothetical protein L914_03394 [Phytophthora parasitica] >gi|570334286|gb|ETO82234.1| hypothetical protein F444_03602 [Phytophthora parasitica P1976])

HSP 1 Score: 75.0998 bits (183), Expect = 1.533e-12
Identity = 60/173 (34.68%), Postives = 94/173 (54.34%), Query Frame = 0
Query:   72 VVILIGAASFLLGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDL---DKKRKLGE--LAIAELLLQES------VLGKEGG 233
            V + +  +SFLLG++E+P++ R VG  +G+ V  +  A+++F DAT++  + KL  E ++ + ELN IRSE+ + G       PTS+AV + T+P      +++   P AS    Q  +S   G+SS S  S  +    D  R+  E  LA+AEL L E       V  +EGG
Sbjct:   21 VFVTVTMSSFLLGRRELPKIGRFVGVYSGRSVGAILRAKKEFFDATKDNDIVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTSDAVPR-TAPRGTANHLAA-AAPGASEPAVQTSTSPAGGRSSVSLASANEYEMQDGVRRSAEASLAMAELKLAEQNKFAPRVESQEGG 191          
BLAST of EWM28179.1 vs. NCBI_GenBank
Match: gi|568025945|gb|ETL99946.1| (hypothetical protein L917_03294 [Phytophthora parasitica])

HSP 1 Score: 74.7146 bits (182), Expect = 1.795e-12
Identity = 56/159 (35.22%), Postives = 89/159 (55.97%), Query Frame = 0
Query:   72 VVILIGAASFLLGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDL---DKKRKLGE--LAIAELLLQE 225
            V + +  +SFLLG++E+P++ R VG  +G+ V  +  A+++F DAT++  + KL  E ++ + ELN IRSE+ + G       PTS+AV + T+P      +++   P AS    Q  +S   G+SS S  S  +    D  R+  E  LA+AEL L E
Sbjct:    7 VFVTVTMSSFLLGRRELPKIGRFVGVYSGRSVGAILRAKKEFFDATKDNDIVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTSDAVPR-TAPRGTANHLAA-AAPGASEPAVQTSTSPAGGRSSVSLASANEYEMQDGVRRSAEASLAMAELKLAE 163          
BLAST of EWM28179.1 vs. NCBI_GenBank
Match: gi|1214703948|gb|OWZ15880.1| (Sulfatase [Phytophthora megakarya])

HSP 1 Score: 73.1738 bits (178), Expect = 6.565e-12
Identity = 57/171 (33.33%), Postives = 89/171 (52.05%), Query Frame = 0
Query:   72 VVILIGAASFLLGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAG-----LRPSRRMPTSEA-------VSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDL---DKKRKLGE--LAIAELLLQE 225
            V + + AASFLLG++E+P++ R VG  +G+ V  +  A+++F DAT++  L KL  E ++ + ELN IRSE+ + G     L+P+   P+S A        +  T P  P  ++S+ P                 G+SS S  S ++    D  R+  E  LA+AEL L E
Sbjct:    7 VFVTVTAASFLLGRRELPKIGRFVGLYSGRSVGAIIRAKKEFFDATKDNDLVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTGSAPSSTASGTVIRSAAGTTVPNVPTAQVSTSP---------------LGGRSSVSLASTVEYEMQDGVRRSAEASLAMAELKLAE 162          
BLAST of EWM28179.1 vs. NCBI_GenBank
Match: gi|299470224|emb|CBN79528.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.0182 bits (175), Expect = 3.692e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = 0
Query:   64 MFDVTGLEVVILIGAASFLLGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAA 146
            MFDV   E+V++ GAA  LLGK+++P + R+ GRG GK+  L+   R +  + +Q + L +L +E+R N+++L  I++E+R A
Sbjct:    1 MFDVGMAEMVVIGGAAILLLGKRDMPLVFRLAGRGVGKVSGLVQGGRARMNELSQGSDLLQLQNEIRSNLDDLRVIKAELRGA 83          
BLAST of EWM28179.1 vs. NCBI_GenBank
Match: gi|695457475|ref|XP_009537205.1| (hypothetical protein PHYSODRAFT_306726 [Phytophthora sojae] >gi|348667814|gb|EGZ07639.1| hypothetical protein PHYSODRAFT_306726 [Phytophthora sojae])

HSP 1 Score: 68.9366 bits (167), Expect = 2.516e-10
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 0
Query:   72 VVILIGAASFLLGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPK 178
            V + + A+SFLLG++E+P++ R +G  +G+ V  +  A+++F DAT++  L KL  E ++ + ELN IRSE+   G               +  PLQP    SS PK
Sbjct:    7 VFVTVTASSFLLGRRELPKIGRFLGLYSGRSVGAILRAKKEFFDATKDNDLVKLQREFQRGIEELNEIRSELTTVG--------------NMRRPLQPSGVPSSAPK 99          
BLAST of EWM28179.1 vs. NCBI_GenBank
Match: gi|1028942038|ref|XP_016714236.1| (PREDICTED: sec-independent protein translocase protein TatB-like [Gossypium hirsutum])

HSP 1 Score: 67.3958 bits (163), Expect = 1.186e-9
Identity = 30/85 (35.29%), Postives = 56/85 (65.88%), Query Frame = 0
Query:   64 MFDVTGLEVVILIGAASFLLGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGL 148
            MF ++  E+ +LIGA + L+G K++P++A++ GR  G+ +  +  AR QF +A Q +   ++T E++  M +L++IR E+R+  L
Sbjct:    1 MFGISYGELFLLIGATAALVGPKDLPKIAKVAGRFAGRSIGYVQLARGQFDNAMQQSQARQVTKELQDTMAQLDAIRHEIRSLSL 85          
BLAST of EWM28179.1 vs. NCBI_GenBank
Match: gi|698783269|ref|XP_009824678.1| (hypothetical protein H257_02645 [Aphanomyces astaci] >gi|574120728|gb|ETV86206.1| hypothetical protein H257_02645 [Aphanomyces astaci])

HSP 1 Score: 65.4698 bits (158), Expect = 4.172e-9
Identity = 35/116 (30.17%), Postives = 67/116 (57.76%), Query Frame = 0
Query:   67 VTGLEVVILIGAASFLLGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSAS 182
            V+  E+ I+I A  +L+G+KE+P++A++ GR  G+ V  +  A+ ++ +AT+N+ L K+  E+++ ++ELN IRSE+                +S +  P +P    ++ P  +AS
Sbjct:    2 VSWAEIGIVIVAGGYLIGRKELPRMAKMGGRYVGRTVGAVLRAKNEYFEATKNSDLVKMQSELQKGLDELNQIRSEM--------------TTISSMKRPYRPVSTPANRPPATAS 103          
The following BLAST results are available for this feature:
BLAST of EWM28179.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110524|gb|EWM28179.1|0.000e+0100.00hypothetical protein Naga_100004g139 [Nannochlorop... [more]
gi|585110525|gb|EWM28180.1|6.349e-10487.57hypothetical protein Naga_100004g139 [Nannochlorop... [more]
gi|675183657|ref|XP_008900713.1|1.275e-1234.68hypothetical protein PPTG_08388 [Phytophthora para... [more]
gi|568056397|gb|ETM53109.1|1.533e-1234.68hypothetical protein L914_03394 [Phytophthora para... [more]
gi|568025945|gb|ETL99946.1|1.795e-1235.22hypothetical protein L917_03294 [Phytophthora para... [more]
gi|1214703948|gb|OWZ15880.1|6.565e-1233.33Sulfatase [Phytophthora megakarya][more]
gi|299470224|emb|CBN79528.1|3.692e-1139.76conserved unknown protein [Ectocarpus siliculosus][more]
gi|695457475|ref|XP_009537205.1|2.516e-1035.51hypothetical protein PHYSODRAFT_306726 [Phytophtho... [more]
gi|1028942038|ref|XP_016714236.1|1.186e-935.29PREDICTED: sec-independent protein translocase pro... [more]
gi|698783269|ref|XP_009824678.1|4.172e-930.17hypothetical protein H257_02645 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2497rna2497Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications