rna2496, rna2496 (mRNA) Nannochloropsis gaditana

Overview
Namerna2496
Unique Namerna2496
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1007
Alignment locationCM002459.1:519835..522125 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g139.9111.mrna
Orig protein idgnl|cribi|Naga_100004g139.9111
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:519835..522125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g139gene2387Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2496rna2496-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28180.1cds2488Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2496 ID=rna2496|Name=rna2496|organism=Nannochloropsis gaditana|type=mRNA|length=1007bp
TGAACAAGCGGTTCCTTTTACGTCACAGCCCTGCCAGGTGCATCTTAAGC
AACCCCTCTGATCCAGGCCCATGTCTTCTCACTTCTCATCGGCTCCCACA
GGCTCGTTTCCCGCGACAGACAACGATGCATACCTTTCCTCTCGTACGAT
TATTGGCAAATCTCTTGGAGAGTCTGAATTCGGAACTTTCTTTCGATTCT
AGAGACCCCGAGGGAGACGAATACCTCAGTCGCTGGCATTCCTCGCCTTT
CCAACACGCTGTCGAAATAGTTATCTCTGTCTTGTTATTCGGCCCTTTAC
TACTGTCTGCATGGAAGAACATGGAGAAGCAAGTGCGGGCCTTGAGAATA
ACATACACGCCTACCAAACTTCAAGTCCTATGGAGCTACGCCTTACTTAT
GACGTTCGTTCTTCAGGTTCCGCTTAAACTCGACGTCAAAAAGCTACCAT
CGCATCCTGCCTATTTTCTGCAACCCTGCCATGTCACGACGGTTTTATAC
TTCGTATGTACTGTTGTTCCATGTTATTCTTCGTTTATTTGTTTCCATGC
TTTGAGTTTGCTCACATGGGGACCATCTCTGGCTTTCTGTTTCCCAAATT
ACCCCGCTACGCCATTGGAGGTACTCTTCTTCCACTTGCAGCACTTACTA
CTCGTGTCAGCTCCCATATTCGCCATAAGCAAGGTCCATCGGCCGCTTTA
CCGGAGTTGGAGCTGGAATTATTTTTCCTTTCTCCTGTTGTCAGCCTATC
ATTGGTGGCTGCTGCTGCCATGGGGAATTTACACCGGCATAAACGTCGCC
ACTATGACTTCTCCTCCTCCAGCCCTTGCCCCATTTAAACGATACTATCG
CCTAGTGCAAGCTGGAGCATGTTTTATTCTGCACACGCTAAGTGTTGGTG
TACACTTCGCATTGAGTTGTCTCATGGAGAGTTTAAGTAAATGGAAACGC
ACATAAAATGAGAACATCGTTACCTACCCAAACAACCAGCACACGAGAAA
GCTTTGC
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protein sequence of rna2496

>rna2496-protein ID=rna2496-protein|Name=rna2496|organism=Nannochloropsis gaditana|type=polypeptide|length=198bp
MTEVLAVHGALNAMFDVTGLEVVILIGAASFLLGKDLVCFYSHLCPFDSS
HFTLFPGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTD
EVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFP
KPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQV
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mRNA from alignment at CM002459.1:519835..522125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2496 ID=rna2496|Name=rna2496|organism=Nannochloropsis gaditana|type=mRNA|length=2291bp|location=Sequence derived from alignment at CM002459.1:519835..522125- (Nannochloropsis gaditana)
AGATGCACATGAAGAATGTGAATTAAAAAATGCTGGAAAAGGATCAAGCT
ATCTATCAAGCACCATTCGTCTCTGAAGCTTGGGACGCGTATAATTAAAG
TTCCCGCAACAGCTAGGATTAGGAGGCAGATTGGAAATGACTGAAGTTCT
CGCAGTGCACGGTGCTTTGAACGTACGTTGGATAAAATATGTCTATATCC
ATTCAGCTTTGCACAACAGTATATCGCGCGAAAACTGTTAAAAATGACAG
TGACACAAAATCAGGAGGGTAATTTGATGGCCAACAGTCGAGTCTACCTG
CTCTGGCAGAGGCGACAGCGGGCCGGGCGGGAGCTTGGCAGGCCGGCTAA
AAGCTTCTTCTTTGAAGAGGACGAAACTCACACATCATATGTACATGTTG
CGTACCATTACTATGATAAATACAAACAGGCGATGTTCGATGTCACTGGT
CTCGAGGTCGTGATTTTGATAGGAGCGGCTTCCTTTCTTCTTGGTAAGGA
CCTCGTGTGTTTCTACTCCCATCTTTGTCCTTTTGACTCTTCACATTTTA
CGCTTTTTCCAGGGAAAAAGGAGGTCCCTCAGCTAGCGCGGATAGTAGGA
CGAGGGACAGGAAAGCTAGTGGCTTTGTTGAACACAGCACGGGAGCAATT
CGTTGATGCCACGCAGAATACGCACCTTTCGAAGGCAGGTCATATGAAAG
AGGGGAGATGACATATAAGCACAGCCATTTAACCACAGTGCGTTGCACAT
GATTTCAACAGCTTACTGATGAAGTTCGACAGAACATGAATGAGCTTAAT
TCAATCCGCTCGGAAGTACGGGCGGCAGGTTTGCGGCCAAGCCGACGTAT
GCCTACGTCAGAAGCCGTAAGCAAGCTCACCAGTCCCCTTCAGCCGGAAA
AGGAGATGAGCAGCTTTCCAAAGCCTTCCGCTTCGTCATGCGGTAAGCAA
GAAGGCAGCTCTTTTTTTTTAGGAAAGAGCTCGGGCAGTAAATTCTCGAA
GATTGACCTTGACAAAAAGAGAAAGCTCGGTGAGCTTGCGATCGCAGAGC
TCTTGTTGCAGGTATGATGTGAGCGATGTCACCATTTGTGTCTTTCCCCG
GGATATGCATGATGTGTGGGAATTTACCTGGCAAAAATATTTTTCATCCT
ATTCTCTGCTGGATAAGAAAAAATCGACTTGCTGTGGTGTTAGTTTAAAT
TTTTCTACATAATTCGTTCTCGACCTGTACAGGAATCAGTGCTGGGAAAA
GAGGGAGGGACGTTGTGTAGAAGTCAAAAGAAGCTTGTCGTAAGTCCACA
TGCAAAGGCTGGCTCCGCTGTCTTGGATGACGTCATTTTCGAGAATTTGC
TGTGGAACCAGATGGACCACACTCTTAAGATAAATGAGGGAGGAAAAGTA
CCCGACGTACCACCACAAAAAGACTGTGCGACTTAATTTGTATCGAATTT
AGCACATTTGAAGCACGTAAATTAAACAAATGAGTTGATGCAAATTGGCA
TGTCGGCAGAATTCAACAGCAAAGCTTTCTCGTGTGCTGGTTGTTTGGGT
AGGTAACGATGTTCTCATTTTATGTGCGTTTCCATTTACTTAAACTCTCC
ATGAGACAACTCAATGCGAAGTGTACACCAACACTTAGCGTGTGCAGAAT
AAAACATGCTCCAGCTTGCACTAGGCGATAGTATCGTTTAAATGGGGCAA
GGGCTGGAGGAGGAGAAGTCATAGTGGCGACGTTTATGCCGGTGTAAATT
CCCCATGGCAGCAGCAGCCACCAATGATAGGCTGACAACAGGAGAAAGGA
AAAATAATTCCAGCTCCAACTCCGGTAAAGCGGCCGATGGACCTTGCTTA
TGGCGAATATGGGAGCTGACACGAGTAGTAAGTGCTGCAAGTGGAAGAAG
AGTACCTCCAATGGCGTAGCGGGGTAATTTGGGAAACAGAAAGCCAGAGA
TGGTCCCCATGTGAGCAAACTCAAAGCATGGAAACAAATAAACGAAGAAT
AACATGGAACAACAGTACATACGAAGTATAAAACCGTCGTGACATGGCAG
GGTTGCAGAAAATAGGCAGGATGCGATGGTAGCTTTTTGACGTCGAGTTT
AAGCGGAACCTGAAGAACGAACGTCATAAGTAAGGCGTAGCTCCATAGGA
CTTGAAGTTTGGTAGGCGTGTATGTTATTCTCAAGGCCCGCACTTGCTTC
TCCATGTTCTTCCATGCAGACAGTAGTAAAGGGCCGAATAACAAGACAGA
GATAACTATTTCGACAGCGTGTTGGAAAGGCGAGGAATGCC
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Coding sequence (CDS) from alignment at CM002459.1:519835..522125-

>rna2496 ID=rna2496|Name=rna2496|organism=Nannochloropsis gaditana|type=CDS|length=1791bp|location=Sequence derived from alignment at CM002459.1:519835..522125- (Nannochloropsis gaditana)
CTTACTGATGAAGTTCGACAGAACATGAATGAGCTTAATTCAATCCGCTC
GGAAGTACGGGCGGCAGGTTTGCGGCCAAGCCGACGTATGCCTACGTCAG
AAGCCGTAAGCAAGCTCACCAGTCCCCTTCAGCCGGAAAAGGAGATGAGC
AGCTTTCCAAAGCCTTCCGCTTCGTCATGCGGTAAGCAAGAAGGCAGCTC
TTTTTTTTTAGGAAAGAGCTCGGGCAGTAAATTCTCGAAGATTGACCTTG
ACAAAAAGAGAAAGCTCGGTGAGCTTGCGATCGCAGAGCTCTTGTTGCAG
GTATGAGCGATGTTCGATGTCACTGGTCTCGAGGTCGTGATTTTGATAGG
AGCGGCTTCCTTTCTTCTTGGTAAGGACCTCGTGTGTTTCTACTCCCATC
TTTGTCCTTTTGACTCTTCACATTTTACGCTTTTTCCAGGGAAAAAGGAG
GTCCCTCAGCTAGCGCGGATAGTAGGACGAGGGACAGGAAAGCTAGTGGC
TTTGTTGAACACAGCACGGGAGCAATTCGTTGATGCCACGCAGAATACGC
ACCTTTCGAAGATGACTGAAGTTCTCGCAGTGCACGGTGCTTTGAACCTT
ACTGATGAAGTTCGACAGAACATGAATGAGCTTAATTCAATCCGCTCGGA
AGTACGGGCGGCAGGTTTGCGGCCAAGCCGACGTATGCCTACGTCAGAAG
CCGTAAGCAAGCTCACCAGTCCCCTTCAGCCGGAAAAGGAGATGAGCAGC
TTTCCAAAGCCTTCCGCTTCGTCATGCGGTAAGCAAGAAGGCAGCTCTTT
TTTTTTAGGAAAGAGCTCGGGCAGTAAATTCTCGAAGATTGACCTTGACA
AAAAGAGAAAGCTCGGTGAGCTTGCGATCGCAGAGCTCTTGTTGCAGGTA
TGAGCGATGTTCGATGTCACTGGTCTCGAGGTCGTGATTTTGATAGGAGC
GGCTTCCTTTCTTCTTGGTAAGGACCTCGTGTGTTTCTACTCCCATCTTT
GTCCTTTTGACTCTTCACATTTTACGCTTTTTCCAGGGAAAAAGGAGGTC
CCTCAGCTAGCGCGGATAGTAGGACGAGGGACAGGAAAGCTAGTGGCTTT
GTTGAACACAGCACGGGAGCAATTCGTTGATGCCACGCAGAATACGCACC
TTTCGAAGATGACTGAAGTTCTCGCAGTGCACGGTGCTTTGAACCTTACT
GATGAAGTTCGACAGAACATGAATGAGCTTAATTCAATCCGCTCGGAAGT
ACGGGCGGCAGGTTTGCGGCCAAGCCGACGTATGCCTACGTCAGAAGCCG
TAAGCAAGCTCACCAGTCCCCTTCAGCCGGAAAAGGAGATGAGCAGCTTT
CCAAAGCCTTCCGCTTCGTCATGCGGTAAGCAAGAAGGCAGCTCTTTTTT
TTTAGGAAAGAGCTCGGGCAGTAAATTCTCGAAGATTGACCTTGACAAAA
AGAGAAAGCTCGGTGAGCTTGCGATCGCAGAGCTCTTGTTGCAGGTATGA
GCGATGTTCGATGTCACTGGTCTCGAGGTCGTGATTTTGATAGGAGCGGC
TTCCTTTCTTCTTGGTAAGGACCTCGTGTGTTTCTACTCCCATCTTTGTC
CTTTTGACTCTTCACATTTTACGCTTTTTCCAGGGAAAAAGGAGGTCCCT
CAGCTAGCGCGGATAGTAGGACGAGGGACAGGAAAGCTAGTGGCTTTGTT
GAACACAGCACGGGAGCAATTCGTTGATGCCACGCAGAATACGCACCTTT
CGAAGATGACTGAAGTTCTCGCAGTGCACGGTGCTTTGAAC
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Synonyms
Publications