EWM28180.1, cds2488 (CDS) Nannochloropsis gaditana

Overview
NameEWM28180.1
Unique Namecds2488
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:521954..521989 -
Alignment locationCM002459.1:521442..521696 -
Alignment locationCM002459.1:521059..521364 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28180.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g139.9111.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:521954..521989 -
CM002459.1supercontigCM002459.1:521442..521696 -
CM002459.1supercontigCM002459.1:521059..521364 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28180.1 vs. NCBI_GenBank
Match: gi|585110525|gb|EWM28180.1| (hypothetical protein Naga_100004g139 [Nannochloropsis gaditana])

HSP 1 Score: 402.519 bits (1033), Expect = 4.950e-142
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
Query:    1 MTEVLAVHGALNAMFDVTGLEVVILIGAASFLLGKDLVCFYSHLCPFDSSHFTLFPGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQV 198
            MTEVLAVHGALNAMFDVTGLEVVILIGAASFLLGKDLVCFYSHLCPFDSSHFTLFPGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQV
Sbjct:    1 MTEVLAVHGALNAMFDVTGLEVVILIGAASFLLGKDLVCFYSHLCPFDSSHFTLFPGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQV 198          
BLAST of EWM28180.1 vs. NCBI_GenBank
Match: gi|585110524|gb|EWM28179.1| (hypothetical protein Naga_100004g139 [Nannochloropsis gaditana])

HSP 1 Score: 310.457 bits (794), Expect = 4.320e-104
Identity = 162/185 (87.57%), Postives = 162/185 (87.57%), Query Frame = 0
Query:   13 AMFDVTGLEVVILIGAASFLLGKDLVCFYSHLCPFDSSHFTLFPGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQ 197
            AMFDVTGLEVVILIGAASFLLGK                       KEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQ
Sbjct:   63 AMFDVTGLEVVILIGAASFLLGK-----------------------KEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQ 224          
BLAST of EWM28180.1 vs. NCBI_GenBank
Match: gi|568056397|gb|ETM53109.1| (hypothetical protein L914_03394 [Phytophthora parasitica] >gi|570334286|gb|ETO82234.1| hypothetical protein F444_03602 [Phytophthora parasitica P1976])

HSP 1 Score: 63.5438 bits (153), Expect = 5.661e-9
Identity = 46/145 (31.72%), Postives = 79/145 (54.48%), Query Frame = 0
Query:   57 GKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKS-----SGSKFSKIDLDKKRKLGELAIAELLL 196
            G++E+P++ R VG  +G+ V  +  A+++F DAT++  + KL  E ++ + ELN IRSE+ + G       PTS+AV + T+P      +++   P AS    Q  +S   G+S     S +++   D  ++     LA+AEL L
Sbjct:   33 GRRELPKIGRFVGVYSGRSVGAILRAKKEFFDATKDNDIVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTSDAVPR-TAPRGTANHLAA-AAPGASEPAVQTSTSPAGGRSSVSLASANEYEMQDGVRRSAEASLAMAELKL 175          
BLAST of EWM28180.1 vs. NCBI_GenBank
Match: gi|675183657|ref|XP_008900713.1| (hypothetical protein PPTG_08388 [Phytophthora parasitica INRA-310] >gi|566030638|gb|ETI53549.1| hypothetical protein F443_03533 [Phytophthora parasitica P1569] >gi|567968282|gb|ETK93425.1| hypothetical protein L915_03415 [Phytophthora parasitica] >gi|567996732|gb|ETL46834.1| hypothetical protein L916_03368 [Phytophthora parasitica] >gi|568098915|gb|ETN13633.1| hypothetical protein PPTG_08388 [Phytophthora parasitica INRA-310] >gi|570958380|gb|ETP23359.1| hypothetical protein F441_03527 [Phytophthora parasitica CJ01A1] >gi|570994159|gb|ETP51351.1| hypothetical protein F442_03516 [Phytophthora parasitica P10297] >gi|970628991|gb|KUF76407.1| Sulfatase protein [Phytophthora nicotianae])

HSP 1 Score: 62.7734 bits (151), Expect = 9.754e-9
Identity = 46/145 (31.72%), Postives = 79/145 (54.48%), Query Frame = 0
Query:   57 GKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKS-----SGSKFSKIDLDKKRKLGELAIAELLL 196
            G++E+P++ R VG  +G+ V  +  A+++F DAT++  + KL  E ++ + ELN IRSE+ + G       PTS+AV + T+P      +++   P AS    Q  +S   G+S     S +++   D  ++     LA+AEL L
Sbjct:   19 GRRELPKIGRFVGVYSGRSVGAILRAKKEFFDATKDNDIVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTSDAVPR-TAPRGTANHLAA-AAPGASEPAVQTSTSPAGGRSSVSLASANEYEMQDGVRRSAEASLAMAELKL 161          
BLAST of EWM28180.1 vs. NCBI_GenBank
Match: gi|568025945|gb|ETL99946.1| (hypothetical protein L917_03294 [Phytophthora parasitica])

HSP 1 Score: 62.7734 bits (151), Expect = 9.853e-9
Identity = 46/145 (31.72%), Postives = 79/145 (54.48%), Query Frame = 0
Query:   57 GKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKS-----SGSKFSKIDLDKKRKLGELAIAELLL 196
            G++E+P++ R VG  +G+ V  +  A+++F DAT++  + KL  E ++ + ELN IRSE+ + G       PTS+AV + T+P      +++   P AS    Q  +S   G+S     S +++   D  ++     LA+AEL L
Sbjct:   19 GRRELPKIGRFVGVYSGRSVGAILRAKKEFFDATKDNDIVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTSDAVPR-TAPRGTANHLAA-AAPGASEPAVQTSTSPAGGRSSVSLASANEYEMQDGVRRSAEASLAMAELKL 161          
BLAST of EWM28180.1 vs. NCBI_GenBank
Match: gi|1214703948|gb|OWZ15880.1| (Sulfatase [Phytophthora megakarya])

HSP 1 Score: 58.5362 bits (140), Expect = 3.154e-7
Identity = 35/106 (33.02%), Postives = 60/106 (56.60%), Query Frame = 0
Query:   57 GKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAG-----LRPSRRMPTSEA-------VSKLTSPLQPEKEMSSFP 150
            G++E+P++ R VG  +G+ V  +  A+++F DAT++  L KL  E ++ + ELN IRSE+ + G     L+P+   P+S A        +  T P  P  ++S+ P
Sbjct:   19 GRRELPKIGRFVGLYSGRSVGAIIRAKKEFFDATKDNDLVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTGSAPSSTASGTVIRSAAGTTVPNVPTAQVSTSP 124          
BLAST of EWM28180.1 vs. NCBI_GenBank
Match: gi|299470224|emb|CBN79528.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 58.5362 bits (140), Expect = 6.074e-7
Identity = 33/106 (31.13%), Postives = 56/106 (52.83%), Query Frame = 0
Query:   14 MFDVTGLEVVILIGAASFLLGKDLVCFYSHLCPFDSSHFTLFPGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAA 119
            MFDV   E+V++ GAA  LLGK                       +++P + R+ GRG GK+  L+   R +  + +Q + L +L +E+R N+++L  I++E+R A
Sbjct:    1 MFDVGMAEMVVIGGAAILLLGK-----------------------RDMPLVFRLAGRGVGKVSGLVQGGRARMNELSQGSDLLQLQNEIRSNLDDLRVIKAELRGA 83          
The following BLAST results are available for this feature:
BLAST of EWM28180.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585110525|gb|EWM28180.1|4.950e-142100.00hypothetical protein Naga_100004g139 [Nannochlorop... [more]
gi|585110524|gb|EWM28179.1|4.320e-10487.57hypothetical protein Naga_100004g139 [Nannochlorop... [more]
gi|568056397|gb|ETM53109.1|5.661e-931.72hypothetical protein L914_03394 [Phytophthora para... [more]
gi|675183657|ref|XP_008900713.1|9.754e-931.72hypothetical protein PPTG_08388 [Phytophthora para... [more]
gi|568025945|gb|ETL99946.1|9.853e-931.72hypothetical protein L917_03294 [Phytophthora para... [more]
gi|1214703948|gb|OWZ15880.1|3.154e-733.02Sulfatase [Phytophthora megakarya][more]
gi|299470224|emb|CBN79528.1|6.074e-731.13conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2496rna2496Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications