EWM28180.1, cds2488 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28180.1 vs. NCBI_GenBank
Match: gi|585110525|gb|EWM28180.1| (hypothetical protein Naga_100004g139 [Nannochloropsis gaditana]) HSP 1 Score: 402.519 bits (1033), Expect = 4.950e-142 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
Query: 1 MTEVLAVHGALNAMFDVTGLEVVILIGAASFLLGKDLVCFYSHLCPFDSSHFTLFPGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQV 198
MTEVLAVHGALNAMFDVTGLEVVILIGAASFLLGKDLVCFYSHLCPFDSSHFTLFPGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQV
Sbjct: 1 MTEVLAVHGALNAMFDVTGLEVVILIGAASFLLGKDLVCFYSHLCPFDSSHFTLFPGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQV 198
BLAST of EWM28180.1 vs. NCBI_GenBank
Match: gi|585110524|gb|EWM28179.1| (hypothetical protein Naga_100004g139 [Nannochloropsis gaditana]) HSP 1 Score: 310.457 bits (794), Expect = 4.320e-104 Identity = 162/185 (87.57%), Postives = 162/185 (87.57%), Query Frame = 0
Query: 13 AMFDVTGLEVVILIGAASFLLGKDLVCFYSHLCPFDSSHFTLFPGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQ 197
AMFDVTGLEVVILIGAASFLLGK KEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQ
Sbjct: 63 AMFDVTGLEVVILIGAASFLLGK-----------------------KEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKSSGSKFSKIDLDKKRKLGELAIAELLLQ 224
BLAST of EWM28180.1 vs. NCBI_GenBank
Match: gi|568056397|gb|ETM53109.1| (hypothetical protein L914_03394 [Phytophthora parasitica] >gi|570334286|gb|ETO82234.1| hypothetical protein F444_03602 [Phytophthora parasitica P1976]) HSP 1 Score: 63.5438 bits (153), Expect = 5.661e-9 Identity = 46/145 (31.72%), Postives = 79/145 (54.48%), Query Frame = 0
Query: 57 GKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKS-----SGSKFSKIDLDKKRKLGELAIAELLL 196
G++E+P++ R VG +G+ V + A+++F DAT++ + KL E ++ + ELN IRSE+ + G PTS+AV + T+P +++ P AS Q +S G+S S +++ D ++ LA+AEL L
Sbjct: 33 GRRELPKIGRFVGVYSGRSVGAILRAKKEFFDATKDNDIVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTSDAVPR-TAPRGTANHLAA-AAPGASEPAVQTSTSPAGGRSSVSLASANEYEMQDGVRRSAEASLAMAELKL 175
BLAST of EWM28180.1 vs. NCBI_GenBank
Match: gi|675183657|ref|XP_008900713.1| (hypothetical protein PPTG_08388 [Phytophthora parasitica INRA-310] >gi|566030638|gb|ETI53549.1| hypothetical protein F443_03533 [Phytophthora parasitica P1569] >gi|567968282|gb|ETK93425.1| hypothetical protein L915_03415 [Phytophthora parasitica] >gi|567996732|gb|ETL46834.1| hypothetical protein L916_03368 [Phytophthora parasitica] >gi|568098915|gb|ETN13633.1| hypothetical protein PPTG_08388 [Phytophthora parasitica INRA-310] >gi|570958380|gb|ETP23359.1| hypothetical protein F441_03527 [Phytophthora parasitica CJ01A1] >gi|570994159|gb|ETP51351.1| hypothetical protein F442_03516 [Phytophthora parasitica P10297] >gi|970628991|gb|KUF76407.1| Sulfatase protein [Phytophthora nicotianae]) HSP 1 Score: 62.7734 bits (151), Expect = 9.754e-9 Identity = 46/145 (31.72%), Postives = 79/145 (54.48%), Query Frame = 0
Query: 57 GKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKS-----SGSKFSKIDLDKKRKLGELAIAELLL 196
G++E+P++ R VG +G+ V + A+++F DAT++ + KL E ++ + ELN IRSE+ + G PTS+AV + T+P +++ P AS Q +S G+S S +++ D ++ LA+AEL L
Sbjct: 19 GRRELPKIGRFVGVYSGRSVGAILRAKKEFFDATKDNDIVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTSDAVPR-TAPRGTANHLAA-AAPGASEPAVQTSTSPAGGRSSVSLASANEYEMQDGVRRSAEASLAMAELKL 161
BLAST of EWM28180.1 vs. NCBI_GenBank
Match: gi|568025945|gb|ETL99946.1| (hypothetical protein L917_03294 [Phytophthora parasitica]) HSP 1 Score: 62.7734 bits (151), Expect = 9.853e-9 Identity = 46/145 (31.72%), Postives = 79/145 (54.48%), Query Frame = 0
Query: 57 GKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAGLRPSRRMPTSEAVSKLTSPLQPEKEMSSFPKPSASSCGKQEGSSFFLGKS-----SGSKFSKIDLDKKRKLGELAIAELLL 196
G++E+P++ R VG +G+ V + A+++F DAT++ + KL E ++ + ELN IRSE+ + G PTS+AV + T+P +++ P AS Q +S G+S S +++ D ++ LA+AEL L
Sbjct: 19 GRRELPKIGRFVGVYSGRSVGAILRAKKEFFDATKDNDIVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTSDAVPR-TAPRGTANHLAA-AAPGASEPAVQTSTSPAGGRSSVSLASANEYEMQDGVRRSAEASLAMAELKL 161
BLAST of EWM28180.1 vs. NCBI_GenBank
Match: gi|1214703948|gb|OWZ15880.1| (Sulfatase [Phytophthora megakarya]) HSP 1 Score: 58.5362 bits (140), Expect = 3.154e-7 Identity = 35/106 (33.02%), Postives = 60/106 (56.60%), Query Frame = 0
Query: 57 GKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAAG-----LRPSRRMPTSEA-------VSKLTSPLQPEKEMSSFP 150
G++E+P++ R VG +G+ V + A+++F DAT++ L KL E ++ + ELN IRSE+ + G L+P+ P+S A + T P P ++S+ P
Sbjct: 19 GRRELPKIGRFVGLYSGRSVGAIIRAKKEFFDATKDNDLVKLQREFQRGIEELNEIRSELTSVGSMRRPLQPTGSAPSSTASGTVIRSAAGTTVPNVPTAQVSTSP 124
BLAST of EWM28180.1 vs. NCBI_GenBank
Match: gi|299470224|emb|CBN79528.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 58.5362 bits (140), Expect = 6.074e-7 Identity = 33/106 (31.13%), Postives = 56/106 (52.83%), Query Frame = 0
Query: 14 MFDVTGLEVVILIGAASFLLGKDLVCFYSHLCPFDSSHFTLFPGKKEVPQLARIVGRGTGKLVALLNTAREQFVDATQNTHLSKLTDEVRQNMNELNSIRSEVRAA 119
MFDV E+V++ GAA LLGK +++P + R+ GRG GK+ L+ R + + +Q + L +L +E+R N+++L I++E+R A
Sbjct: 1 MFDVGMAEMVVIGGAAILLLGK-----------------------RDMPLVFRLAGRGVGKVSGLVQGGRARMNELSQGSDLLQLQNEIRSNLDDLRVIKAELRGA 83 The following BLAST results are available for this feature:
BLAST of EWM28180.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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