rna2495, rna2495 (mRNA) Nannochloropsis gaditana

Overview
Namerna2495
Unique Namerna2495
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1611
Alignment locationCM002459.1:519601..520607 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g138.9186.mrna
Orig protein idgnl|cribi|Naga_100004g138.9186
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:519601..520607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g138gene2386Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2495rna2495-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28255.1cds2487Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2495 ID=rna2495|Name=rna2495|organism=Nannochloropsis gaditana|type=mRNA|length=1611bp
ATGACGGCTTTTGTGGACACTCGACCCACAGTGCATACGGGGAATGTGAG
GACTATCGCGATGGGCAAGGGGAAAAAGCGTCAACAACTGCCCCTGGCAG
AGGAGCTCGATGAAGCTTCTAAGGAAAAGCGCATATTAGAAAGTAAGAGA
AAACGAATGATACGGCGACGCGCAGAGGGTCAAGGAGATGATGGGGAGGA
GTTGCTTTCACATCACAAAATGGCATCGGACAGAGCGGCGGGAGAAAAAT
CATCGACATTTCTCGATCCTAAATTATCGCAAAAGATTCTAAAAGTGGCA
TCCCGACAGGCAGCTGAAGAGGAGCGGAATTTTGTGTTGGCGCAAGACGA
CCAAGTGCACACAGGCGAAGGCAGCGCGCACGTTCACTCCGTCGCACAGA
GTAGTCGGGGAAAGACGAGTGTTCAAAAACAAGAAGATTCATCGGAGAGC
GATGAGGAGGACATGAAAGAGGTAGGCGGTAACTTACTCTCATGGGATGA
GGAAGGAAGCATGGAATACGAAGAAGATGGAGACGGAACTGTCGAGGTCA
GGGACGGGGCGGTCTACAGTGTCGATAGAGGGGGCTTATCGGAGATAGAG
CACCGAGTTGTATCCTCCTTCATGGATGTTGGCGCAGGGGAACGTCGGAC
ATTGGCCGATATCATTTTGGACAAGATTCATGCAAAAGCAGAAGACGGGG
CGGCATCTGGGTTGCAGGGACAGGCGGCCGACGGGGACGAACCGTTGGTT
ACAACCATTTCACCAAAGGTACAAGAGGTTTATTCTGAAATTGGGCGGCT
GCTAAAAACTTACACGGCCGGGAAGCTGCCGAAGGCTTTCAAAATTTTGC
CTGCTTTAAGTAATTGGGAGGAAGTGATGTATCTGACACGGCCTGACGAA
TGGACACCGCACGCCACGTATGCGGCTACCCGTATATTCGCCTCAAATCT
CAATGCGAAACTTTCGCAACGCTTTTTCAATCTGGTTCTTCTGGAGAAGT
GTCGCGATGATATTCTCAGCAACAAAAACCTAAACTACCATTACTACATG
GCCCTAAAAAAGGCCATGTACAAGCCGGGCGCTTTTTTTAAAGGGATCTT
GCTGCCGCTCATTCAGTCTGGAGATTGCACTGTCCGCGAGGCCACCATCG
TCGGAAGCGTGCTTGGTAAAGTCTCTATCCCTGTGAGTCACGCTGCGGTT
GTACTCCTCAAGCTAGCCACCGCTAGGGACTACTCGGCCTCTTGCTCTAT
TTTTTTAAAGGCACTGCTGAACAAGAAGTATACCTTGCCCTACCGAGTGA
TTGACTCGCTGGTAGAGTACTTTGTTTCGTTCGCAGAGTATGAGGGTCAC
AGCCTAACGGCGAGCACTGGCGCACCGATCCAAGGCGCGGACCCTGTGTT
ACCTGTCTTGTGGCATCAGTCTTTGCTGCTCTTTGCACAGCGGTATAAGG
AGGAGATCACACGGGAGGATAAAGAGCGTTTGCGAGAGGTTATGAAGGCA
CATCAGCACCATCAAATTACACCAGAAATACGTCGGGAGTTGTTTAATTG
TCGCTGTCGAGGCGAGAAAGATGAAAGCGATGCCTTATTGAAAAGCATGC
TTCTGGAATAG
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protein sequence of rna2495

>rna2495-protein ID=rna2495-protein|Name=rna2495|organism=Nannochloropsis gaditana|type=polypeptide|length=276bp
MHTFPLVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVI
SVLLFGPLLLSAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPL
KLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGP
SLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYF
SFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACF
ILHTLSVGVHFALSCLMESLSKWKRT
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mRNA from alignment at CM002459.1:519601..520607+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2495 ID=rna2495|Name=rna2495|organism=Nannochloropsis gaditana|type=mRNA|length=1007bp|location=Sequence derived from alignment at CM002459.1:519601..520607+ (Nannochloropsis gaditana)
TGAACAAGCGGTTCCTTTTACGTCACAGCCCTGCCAGGTGCATCTTAAGC
AACCCCTCTGATCCAGGCCCATGTCTTCTCACTTCTCATCGGCTCCCACA
GGCTCGTTTCCCGCGACAGACAACGATGCATACCTTTCCTCTCGTACGAT
TATTGGCAAATCTCTTGGAGAGTCTGAATTCGGAACTTTCTTTCGATTCT
AGAGACCCCGAGGGAGACGAATACCTCAGTCGCTGGCATTCCTCGCCTTT
CCAACACGCTGTCGAAATAGTTATCTCTGTCTTGTTATTCGGCCCTTTAC
TACTGTCTGCATGGAAGAACATGGAGAAGCAAGTGCGGGCCTTGAGAATA
ACATACACGCCTACCAAACTTCAAGTCCTATGGAGCTACGCCTTACTTAT
GACGTTCGTTCTTCAGGTTCCGCTTAAACTCGACGTCAAAAAGCTACCAT
CGCATCCTGCCTATTTTCTGCAACCCTGCCATGTCACGACGGTTTTATAC
TTCGTATGTACTGTTGTTCCATGTTATTCTTCGTTTATTTGTTTCCATGC
TTTGAGTTTGCTCACATGGGGACCATCTCTGGCTTTCTGTTTCCCAAATT
ACCCCGCTACGCCATTGGAGGTactcttcttccacttgcAGCACTTACTA
CTCGTGTCAGCTCCCATATTCGCCATAAGCAAGGTCCATCGGCCGCTTTA
CCGGAGTTGGAGCTGGAAttatttttcctttctcctgttGTCAGCCTATC
ATtggtggctgctgctgccatggGGAATTTACACCGGCATAAACGTCGCC
ACTAtgacttctcctcctccagcccttgCCCCATTTAAACGATACTATCG
CCTAGTGCAAGCTGGAGCATGTTTTATTCTGCACACGCTAAGTGTTGGTG
TACACTTCGCATTGAGTTGTCTCATGGAGAGTTTAAGTAAATGGAAACGC
ACATAAAATGAGAACATCGTTACCTACCCAAACAACCAGCACACGAGAAA
GCTTTGC
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Coding sequence (CDS) from alignment at CM002459.1:519601..520607+

>rna2495 ID=rna2495|Name=rna2495|organism=Nannochloropsis gaditana|type=CDS|length=831bp|location=Sequence derived from alignment at CM002459.1:519601..520607+ (Nannochloropsis gaditana)
ATGCATACCTTTCCTCTCGTACGATTATTGGCAAATCTCTTGGAGAGTCT
GAATTCGGAACTTTCTTTCGATTCTAGAGACCCCGAGGGAGACGAATACC
TCAGTCGCTGGCATTCCTCGCCTTTCCAACACGCTGTCGAAATAGTTATC
TCTGTCTTGTTATTCGGCCCTTTACTACTGTCTGCATGGAAGAACATGGA
GAAGCAAGTGCGGGCCTTGAGAATAACATACACGCCTACCAAACTTCAAG
TCCTATGGAGCTACGCCTTACTTATGACGTTCGTTCTTCAGGTTCCGCTT
AAACTCGACGTCAAAAAGCTACCATCGCATCCTGCCTATTTTCTGCAACC
CTGCCATGTCACGACGGTTTTATACTTCGTATGTACTGTTGTTCCATGTT
ATTCTTCGTTTATTTGTTTCCATGCTTTGAGTTTGCTCACATGGGGACCA
TCTCTGGCTTTCTGTTTCCCAAATTACCCCGCTACGCCATTGGAGGTact
cttcttccacttgcAGCACTTACTACTCGTGTCAGCTCCCATATTCGCCA
TAAGCAAGGTCCATCGGCCGCTTTACCGGAGTTGGAGCTGGAAttatttt
tcctttctcctgttGTCAGCCTATCATtggtggctgctgctgccatggGG
AATTTACACCGGCATAAACGTCGCCACTAtgacttctcctcctccagccc
ttgCCCCATTTAAACGATACTATCGCCTAGTGCAAGCTGGAGCATGTTTT
ATTCTGCACACGCTAAGTGTTGGTGTACACTTCGCATTGAGTTGTCTCAT
GGAGAGTTTAAGTAAATGGAAACGCACATAA
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Synonyms
Publications