EWM28255.1, cds2487 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|585110600|gb|EWM28255.1| (hypothetical protein Naga_100004g138 [Nannochloropsis gaditana]) HSP 1 Score: 556.599 bits (1433), Expect = 0.000e+0 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query: 1 MHTFPLVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALSCLMESLSKWKRT 276
MHTFPLVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALSCLMESLSKWKRT
Sbjct: 1 MHTFPLVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALSCLMESLSKWKRT 276
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|553196528|ref|XP_005856365.1| (hypothetical protein NGA_2046900, partial [Nannochloropsis gaditana CCMP526] >gi|422292690|gb|EKU19992.1| hypothetical protein NGA_2046900, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 375.555 bits (963), Expect = 5.083e-130 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
Query: 1 MHTFPLVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKV 187
MHTFPLVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKV
Sbjct: 11 MHTFPLVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKV 197
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|299473072|emb|CBN77465.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 165.622 bits (418), Expect = 1.188e-44 Identity = 95/255 (37.25%), Postives = 137/255 (53.73%), Query Frame = 0
Query: 15 ESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYT-----PTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALS 264
E +N L + R ++S+W+ SP QH VE+ +S+L+ PL+ +K ++R R P+ L LW ALL LK ++L SHPAY QPCHV +++ +C V S + H + L WGP LAF P+ P P+E+ F QH L++ AP ++ R LYR + WN F+ L+ YHWW L P ++TG+NVATM+ PP +L F +YYR V C +L +VGV L+
Sbjct: 101 EGVNVCLDAEGRVTALYTFISQWYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDAKRPSLLMKLWGAALLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLYRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPVWGLICGLLQLAAVGVMCVLA 355
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|673026348|ref|XP_008867135.1| (hypothetical protein H310_04528 [Aphanomyces invadans] >gi|574477182|gb|ETW04179.1| hypothetical protein H310_04528 [Aphanomyces invadans]) HSP 1 Score: 85.5001 bits (210), Expect = 6.742e-16 Identity = 78/261 (29.89%), Postives = 114/261 (43.68%), Query Frame = 0
Query: 32 EYLSRWHSSPFQHAVEIVISVLLFGPLLL---------SAWKNMEKQVRALRITYTPTKLQVLW------SYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHL--QHLLLVSAPIFAISKVHRPLY-RSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALSCLMESLSKWK 274
E+ + W +P QHA+E + LL+G + AWK ALR PT + + SYA + P V AY LQPCHV T + +V+P + F + LTW +A FP+ + F+ +H L++ PI A+S+ R Y +W + + YH L + T +NVATM SPP LA YYR VQ CF+LH + G+ A L+ + ++ K
Sbjct: 33 EFRTEWFLTPKQHALETLAFSLLYGSIAYYCHCRAINSDAWK-------ALRPVRVPTTVDAMCFVLAGTSYAAAYYYKHIAPGSWRV-------AYMLQPCHVLTATIAILSVLPGRWANYIFQVMVTLTWSSVVAMAFPDLSDYTHKGDMFNYWYEHALILVLPI-ALSRCGRFTYLGNWHFIVLGYATTGLYHCVCLQIAALATNVNVATMASPPQILAHLGVYYRAVQYAICFVLHLVYNGIIVAGCSLLSAATQPK 278
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|698789906|ref|XP_009827985.1| (hypothetical protein H257_04993 [Aphanomyces astaci] >gi|574116833|gb|ETV82316.1| hypothetical protein H257_04993 [Aphanomyces astaci]) HSP 1 Score: 84.3445 bits (207), Expect = 1.978e-15 Identity = 69/237 (29.11%), Postives = 105/237 (44.30%), Query Frame = 0
Query: 35 SRWHSSPFQHAVEIVISVLLFGPLLL---------SAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPA------YFLQPCHVTT-VLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPL--EVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILH 253
S W+ +P QHA+E V V++F P+ S WKN ++ +RA PT L + + +F L V +H Y QPCHV T L +C ++FI F +TW A FP+ ++ F+++H L++ P+ S SW F F +++ YH +L + T +N+AT+ SPP L +YR Q G CF+LH
Sbjct: 34 SVWYLTPRQHAMETVCYVMIFAPMCYVALKQALNHSKWKN-QRPIRA------PTALDGVLGAITMSSF-------LGVCYYKAHSVNGWRLLYMFQPCHVMTFTLAILCIARGRTANFI-FQVYVAMTWSSDCALAFPDTSDYIYIGDIYNFYIEHYLMLVIPVLLCVSGRYEYIGSPSWILFGFTVIALYHAIVLQLACLVTEVNIATLMSPPNVLRSLGEWYRPAQYGMCFVLH 255
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|470324760|ref|XP_004349922.1| (hypothetical protein CAOG_01402 [Capsaspora owczarzaki ATCC 30864] >gi|765549400|gb|KJE90021.1| hypothetical protein, variant [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 81.2629 bits (199), Expect = 4.113e-14 Identity = 73/235 (31.06%), Postives = 106/235 (45.11%), Query Frame = 0
Query: 35 SRWHSSPFQHAVEIVISVLLFGPLLLSAWKNM--------EKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYS--SFICFHALSLLTWGPSLAFCFPNYP--ATPLEVLFFHLQHLLLVSAPIFAISKVHRPLY----RSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPA-LAPFKRYYRLVQAGACFIL 252
WH SP QHA+E VI +LF + A K + E V + P L L + A+L+ + + K + H + LQPCH+ +VL + P S + FH WG LA FP++ LE+ FF +QHL LV P+ + PL R +S F+F + + YH ++L +YTG N+ + SPP L F +YR V C +L
Sbjct: 42 GSWHLSPKQHAIEFVIYNILFALAVWLAAKRLPNWSTLVSETTVPLSSRGWFPRLLDALCTVAMLVFY----GSAIYYKTVRGHLLFLLQPCHIFSVLLLLLCFWPEKSLKRHVLFHIHIHCLWGALLALVFPDFRDYGMYLEIHFFIMQHLALVIVPLVWVYTGRFPLVSMYGRGFSVTIFAFFVHALYHSFVLASLALYTGNNLNYLMSPPTGILESFGSFYRPVMYAFCLVL 272
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|673026346|ref|XP_008867134.1| (hypothetical protein H310_04527 [Aphanomyces invadans] >gi|574477181|gb|ETW04178.1| hypothetical protein H310_04527 [Aphanomyces invadans]) HSP 1 Score: 80.4925 bits (197), Expect = 4.561e-14 Identity = 66/230 (28.70%), Postives = 101/230 (43.91%), Query Frame = 0
Query: 35 SRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEK--QVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPA------YFLQPCHVTTV-LYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPL--EVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILH 253
S W+ SP QHA+E ++ V +F P+ A K K + + R PT + + +F L V +H Y QPCHV T L +C ++FI F +TW A FP+ ++ F+++H L++ P+ S SW F F +++ YH +L + T +N+AT+ SPP L +YR Q G CF+LH
Sbjct: 34 SVWYLSPRQHALETIVYVTVFAPMCYYAVKQALKHPKWKNQRPIRAPTAFDWVLGVVTMSSF-------LGVCYYKAHSTNGWRLLYMFQPCHVMTFSLAILCIARGRAANFI-FQVYVAMTWSSDCALIFPDTSDYIYIGDIYNFYIEHYLMLIIPVLLCLSGRYEYIGSPSWILFGFTVIALYHAIVLQLACLVTEVNIATLMSPPSVLRSLGEWYRPAQYGMCFVLH 255
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|673026350|ref|XP_008867136.1| (hypothetical protein, variant 1 [Aphanomyces invadans] >gi|574477183|gb|ETW04180.1| hypothetical protein, variant 1 [Aphanomyces invadans]) HSP 1 Score: 79.337 bits (194), Expect = 1.015e-13 Identity = 73/256 (28.52%), Postives = 110/256 (42.97%), Query Frame = 0
Query: 32 EYLSRWHSSPFQHAVEIVISVLLFGPLLL---------SAWKNMEKQVRALRITY-TPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFH--LQHLLLVSAPIFAISKVHRPLY-RSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALSCLMESLSKWK 274
E+ + W +P QHA+E + LL+G + AWK + + VRA + P +V AY LQPCHV T + +V+P + F + LTW +A FP+ + F+ +H L++ PI A+S+ R Y +W + + YH L + T +NVATM SPP LA YYR VQ CF+LH + G+ A L+ + ++ K
Sbjct: 33 EFRTEWFLTPKQHALETLAFSLLYGSIAYYCHCRAINSDAWKAL-RPVRAYYYKHIAPGSWRV---------------------------AYMLQPCHVLTATIAILSVLPGRWANYIFQVMVTLTWSSVVAMAFPDLSDYTHKGDMFNYWYEHALILVLPI-ALSRCGRFTYLGNWHFIVLGYATTGLYHCVCLQIAALATNVNVATMASPPQILAHLGVYYRAVQYAICFVLHLVYNGIIVAGCSLLSAATQPK 259
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|698789924|ref|XP_009827994.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574116842|gb|ETV82325.1| hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 77.411 bits (189), Expect = 4.688e-13 Identity = 83/289 (28.72%), Postives = 120/289 (41.52%), Query Frame = 0
Query: 10 LANLLESLNSELSFDSRDPEG----------DEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVR-----ALRITYTPTKLQ------VLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPA-TPLEVLF-FHLQHLLLVSAPIFAISKVHR-PLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALSCLMESLSKWK 274
+ N LE S L P G +E+ + W +P QHAVE + L+ + AW + V+ AL+ PT + SYA + P V AY LQPCHV T + +V+P + F + LTW +A FP+ T + +F + +H L++ PI +S+ R +W + + YH L + T +NVATM SPP LA YYR VQ CF+LH L + + C M S + K
Sbjct: 6 VVNFLEDAYSRLG-----PNGGLIVLNPHIPEEFRTEWFLTPKQHAVETIAFGFLYASI---AWFCHSRAVKSEAWKALQPARAPTAVDWVCFVLATSSYAAAYYYKHIAPGSWRV-------AYMLQPCHVLTAWIAILSVLPGRWANYIFQVMVTLTWSSVVAMAFPDLSDYTHVGDMFNYWYEHALILVLPI-VLSRTGRFTFLGNWHFIVLGYATTGLYHCVCLQVAALATNVNVATMASPPAILAHLGVYYRAVQYVMCFVLH-LVYNLIIVVGCYMLSTKQLK 277
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|813177990|ref|XP_012205464.1| (hypothetical protein SPRG_11263 [Saprolegnia parasitica CBS 223.65] >gi|641529670|gb|KDO23831.1| hypothetical protein SPRG_11263 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 77.411 bits (189), Expect = 6.650e-13 Identity = 69/258 (26.74%), Postives = 116/258 (44.96%), Query Frame = 0
Query: 6 LVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQV--RALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATP--LEVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGV 259
+V ++A++ + + + S + D++ S+W+ SP+QHA E V + + PL + ++ + +A R T L + +++V V K + P Y LQPCH T+L + TV ++ + F ++W LA FP+ + + +H++++ P S SW F F ++ YH +L + T INVAT+ +PP L YYR Q CF LH L GV
Sbjct: 6 VVDVIADIFAQIGPQHNTPSNELVPDKFRSKWYLSPWQHAFEFVCYMSILVPLSIYSYHCATQHPMWKAQRPVRKATTLDMTLGVGTGVSYVAIVYYKALAPGMWRLP-YALQPCHTLTLLLTLLTVARGKTANLLFQVYVTMSWSSVLALSFPDMSDYEHWGDCFNYFYEHIMMLLVPFLLWHTGRFDYIGSPSWIMFGFTFIALYHAAILQIVVLVTEINVATLMTPPAILKDIGIYYRPAQYLICFALHWLYNGV 262 The following BLAST results are available for this feature:
BLAST of EWM28255.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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