EWM28255.1, cds2487 (CDS) Nannochloropsis gaditana

Overview
NameEWM28255.1
Unique Namecds2487
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:519726..520556 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28255.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g138.9186.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:519726..520556 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR026508TMEM164
Homology
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|585110600|gb|EWM28255.1| (hypothetical protein Naga_100004g138 [Nannochloropsis gaditana])

HSP 1 Score: 556.599 bits (1433), Expect = 0.000e+0
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query:    1 MHTFPLVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALSCLMESLSKWKRT 276
            MHTFPLVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALSCLMESLSKWKRT
Sbjct:    1 MHTFPLVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALSCLMESLSKWKRT 276          
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|553196528|ref|XP_005856365.1| (hypothetical protein NGA_2046900, partial [Nannochloropsis gaditana CCMP526] >gi|422292690|gb|EKU19992.1| hypothetical protein NGA_2046900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 375.555 bits (963), Expect = 5.083e-130
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
Query:    1 MHTFPLVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKV 187
            MHTFPLVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKV
Sbjct:   11 MHTFPLVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKV 197          
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|299473072|emb|CBN77465.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 165.622 bits (418), Expect = 1.188e-44
Identity = 95/255 (37.25%), Postives = 137/255 (53.73%), Query Frame = 0
Query:   15 ESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYT-----PTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALS 264
            E +N  L  + R      ++S+W+ SP QH VE+ +S+L+  PL+   +K    ++R  R         P+ L  LW  ALL        LK   ++L SHPAY  QPCHV +++  +C  V    S +  H  + L WGP LAF  P+ P  P+E+  F  QH L++ AP   ++   R LYR + WN   F+ L+ YHWW L P  ++TG+NVATM+ PP +L  F +YYR V    C +L   +VGV   L+
Sbjct:  101 EGVNVCLDAEGRVTALYTFISQWYLSPRQHVVEMALSILVLSPLVYLYFKLCRARLRLKRAAGAFDAKRPSLLMKLWGAALLGLVGAGAFLKFTKQELISHPAYLWQPCHVHSLVMGLCAFVETEGSLLVMHVATTLWWGPFLAFVAPSLPTDPVEIAIFWAQHALMLLAPFLRLTVGTRWLYRDFWWNSVGFVFLTCYHWWWLAPVNLFTGVNVATMSVPPDSLEMFGKYYRPVWGLICGLLQLAAVGVMCVLA 355          
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|673026348|ref|XP_008867135.1| (hypothetical protein H310_04528 [Aphanomyces invadans] >gi|574477182|gb|ETW04179.1| hypothetical protein H310_04528 [Aphanomyces invadans])

HSP 1 Score: 85.5001 bits (210), Expect = 6.742e-16
Identity = 78/261 (29.89%), Postives = 114/261 (43.68%), Query Frame = 0
Query:   32 EYLSRWHSSPFQHAVEIVISVLLFGPLLL---------SAWKNMEKQVRALRITYTPTKLQVLW------SYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHL--QHLLLVSAPIFAISKVHRPLY-RSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALSCLMESLSKWK 274
            E+ + W  +P QHA+E +   LL+G +            AWK       ALR    PT +  +       SYA    +    P    V       AY LQPCHV T    + +V+P   +   F  +  LTW   +A  FP+      +   F+   +H L++  PI A+S+  R  Y  +W +    +     YH   L    + T +NVATM SPP  LA    YYR VQ   CF+LH +  G+  A   L+ + ++ K
Sbjct:   33 EFRTEWFLTPKQHALETLAFSLLYGSIAYYCHCRAINSDAWK-------ALRPVRVPTTVDAMCFVLAGTSYAAAYYYKHIAPGSWRV-------AYMLQPCHVLTATIAILSVLPGRWANYIFQVMVTLTWSSVVAMAFPDLSDYTHKGDMFNYWYEHALILVLPI-ALSRCGRFTYLGNWHFIVLGYATTGLYHCVCLQIAALATNVNVATMASPPQILAHLGVYYRAVQYAICFVLHLVYNGIIVAGCSLLSAATQPK 278          
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|698789906|ref|XP_009827985.1| (hypothetical protein H257_04993 [Aphanomyces astaci] >gi|574116833|gb|ETV82316.1| hypothetical protein H257_04993 [Aphanomyces astaci])

HSP 1 Score: 84.3445 bits (207), Expect = 1.978e-15
Identity = 69/237 (29.11%), Postives = 105/237 (44.30%), Query Frame = 0
Query:   35 SRWHSSPFQHAVEIVISVLLFGPLLL---------SAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPA------YFLQPCHVTT-VLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPL--EVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILH 253
            S W+ +P QHA+E V  V++F P+           S WKN ++ +RA      PT L  +     + +F       L V    +H        Y  QPCHV T  L  +C      ++FI F     +TW    A  FP+        ++  F+++H L++  P+            S SW  F F +++ YH  +L    + T +N+AT+ SPP  L     +YR  Q G CF+LH
Sbjct:   34 SVWYLTPRQHAMETVCYVMIFAPMCYVALKQALNHSKWKN-QRPIRA------PTALDGVLGAITMSSF-------LGVCYYKAHSVNGWRLLYMFQPCHVMTFTLAILCIARGRTANFI-FQVYVAMTWSSDCALAFPDTSDYIYIGDIYNFYIEHYLMLVIPVLLCVSGRYEYIGSPSWILFGFTVIALYHAIVLQLACLVTEVNIATLMSPPNVLRSLGEWYRPAQYGMCFVLH 255          
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|470324760|ref|XP_004349922.1| (hypothetical protein CAOG_01402 [Capsaspora owczarzaki ATCC 30864] >gi|765549400|gb|KJE90021.1| hypothetical protein, variant [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 81.2629 bits (199), Expect = 4.113e-14
Identity = 73/235 (31.06%), Postives = 106/235 (45.11%), Query Frame = 0
Query:   35 SRWHSSPFQHAVEIVISVLLFGPLLLSAWKNM--------EKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYS--SFICFHALSLLTWGPSLAFCFPNYP--ATPLEVLFFHLQHLLLVSAPIFAISKVHRPLY----RSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPA-LAPFKRYYRLVQAGACFIL 252
              WH SP QHA+E VI  +LF   +  A K +        E  V      + P  L  L + A+L+ +       +  K +  H  + LQPCH+ +VL  +    P  S    + FH      WG  LA  FP++      LE+ FF +QHL LV  P+  +     PL     R +S   F+F + + YH ++L    +YTG N+  + SPP   L  F  +YR V    C +L
Sbjct:   42 GSWHLSPKQHAIEFVIYNILFALAVWLAAKRLPNWSTLVSETTVPLSSRGWFPRLLDALCTVAMLVFY----GSAIYYKTVRGHLLFLLQPCHIFSVLLLLLCFWPEKSLKRHVLFHIHIHCLWGALLALVFPDFRDYGMYLEIHFFIMQHLALVIVPLVWVYTGRFPLVSMYGRGFSVTIFAFFVHALYHSFVLASLALYTGNNLNYLMSPPTGILESFGSFYRPVMYAFCLVL 272          
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|673026346|ref|XP_008867134.1| (hypothetical protein H310_04527 [Aphanomyces invadans] >gi|574477181|gb|ETW04178.1| hypothetical protein H310_04527 [Aphanomyces invadans])

HSP 1 Score: 80.4925 bits (197), Expect = 4.561e-14
Identity = 66/230 (28.70%), Postives = 101/230 (43.91%), Query Frame = 0
Query:   35 SRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEK--QVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPA------YFLQPCHVTTV-LYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPL--EVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILH 253
            S W+ SP QHA+E ++ V +F P+   A K   K  + +  R    PT    +     + +F       L V    +H        Y  QPCHV T  L  +C      ++FI F     +TW    A  FP+        ++  F+++H L++  P+            S SW  F F +++ YH  +L    + T +N+AT+ SPP  L     +YR  Q G CF+LH
Sbjct:   34 SVWYLSPRQHALETIVYVTVFAPMCYYAVKQALKHPKWKNQRPIRAPTAFDWVLGVVTMSSF-------LGVCYYKAHSTNGWRLLYMFQPCHVMTFSLAILCIARGRAANFI-FQVYVAMTWSSDCALIFPDTSDYIYIGDIYNFYIEHYLMLIIPVLLCLSGRYEYIGSPSWILFGFTVIALYHAIVLQLACLVTEVNIATLMSPPSVLRSLGEWYRPAQYGMCFVLH 255          
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|673026350|ref|XP_008867136.1| (hypothetical protein, variant 1 [Aphanomyces invadans] >gi|574477183|gb|ETW04180.1| hypothetical protein, variant 1 [Aphanomyces invadans])

HSP 1 Score: 79.337 bits (194), Expect = 1.015e-13
Identity = 73/256 (28.52%), Postives = 110/256 (42.97%), Query Frame = 0
Query:   32 EYLSRWHSSPFQHAVEIVISVLLFGPLLL---------SAWKNMEKQVRALRITY-TPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFH--LQHLLLVSAPIFAISKVHRPLY-RSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALSCLMESLSKWK 274
            E+ + W  +P QHA+E +   LL+G +            AWK + + VRA    +  P   +V                           AY LQPCHV T    + +V+P   +   F  +  LTW   +A  FP+      +   F+   +H L++  PI A+S+  R  Y  +W +    +     YH   L    + T +NVATM SPP  LA    YYR VQ   CF+LH +  G+  A   L+ + ++ K
Sbjct:   33 EFRTEWFLTPKQHALETLAFSLLYGSIAYYCHCRAINSDAWKAL-RPVRAYYYKHIAPGSWRV---------------------------AYMLQPCHVLTATIAILSVLPGRWANYIFQVMVTLTWSSVVAMAFPDLSDYTHKGDMFNYWYEHALILVLPI-ALSRCGRFTYLGNWHFIVLGYATTGLYHCVCLQIAALATNVNVATMASPPQILAHLGVYYRAVQYAICFVLHLVYNGIIVAGCSLLSAATQPK 259          
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|698789924|ref|XP_009827994.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574116842|gb|ETV82325.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 77.411 bits (189), Expect = 4.688e-13
Identity = 83/289 (28.72%), Postives = 120/289 (41.52%), Query Frame = 0
Query:   10 LANLLESLNSELSFDSRDPEG----------DEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVR-----ALRITYTPTKLQ------VLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPA-TPLEVLF-FHLQHLLLVSAPIFAISKVHR-PLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALSCLMESLSKWK 274
            + N LE   S L      P G          +E+ + W  +P QHAVE +    L+  +   AW    + V+     AL+    PT +          SYA    +    P    V       AY LQPCHV T    + +V+P   +   F  +  LTW   +A  FP+    T +  +F +  +H L++  PI  +S+  R     +W +    +     YH   L    + T +NVATM SPP  LA    YYR VQ   CF+LH L   +   + C M S  + K
Sbjct:    6 VVNFLEDAYSRLG-----PNGGLIVLNPHIPEEFRTEWFLTPKQHAVETIAFGFLYASI---AWFCHSRAVKSEAWKALQPARAPTAVDWVCFVLATSSYAAAYYYKHIAPGSWRV-------AYMLQPCHVLTAWIAILSVLPGRWANYIFQVMVTLTWSSVVAMAFPDLSDYTHVGDMFNYWYEHALILVLPI-VLSRTGRFTFLGNWHFIVLGYATTGLYHCVCLQVAALATNVNVATMASPPAILAHLGVYYRAVQYVMCFVLH-LVYNLIIVVGCYMLSTKQLK 277          
BLAST of EWM28255.1 vs. NCBI_GenBank
Match: gi|813177990|ref|XP_012205464.1| (hypothetical protein SPRG_11263 [Saprolegnia parasitica CBS 223.65] >gi|641529670|gb|KDO23831.1| hypothetical protein SPRG_11263 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 77.411 bits (189), Expect = 6.650e-13
Identity = 69/258 (26.74%), Postives = 116/258 (44.96%), Query Frame = 0
Query:    6 LVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQV--RALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATP--LEVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGV 259
            +V ++A++   +  + +  S +   D++ S+W+ SP+QHA E V  + +  PL + ++    +    +A R     T L +       +++V  V  K     +   P Y LQPCH  T+L  + TV    ++ + F     ++W   LA  FP+        +   +  +H++++  P             S SW  F F  ++ YH  +L    + T INVAT+ +PP  L     YYR  Q   CF LH L  GV
Sbjct:    6 VVDVIADIFAQIGPQHNTPSNELVPDKFRSKWYLSPWQHAFEFVCYMSILVPLSIYSYHCATQHPMWKAQRPVRKATTLDMTLGVGTGVSYVAIVYYKALAPGMWRLP-YALQPCHTLTLLLTLLTVARGKTANLLFQVYVTMSWSSVLALSFPDMSDYEHWGDCFNYFYEHIMMLLVPFLLWHTGRFDYIGSPSWIMFGFTFIALYHAAILQIVVLVTEINVATLMTPPAILKDIGIYYRPAQYLICFALHWLYNGV 262          
The following BLAST results are available for this feature:
BLAST of EWM28255.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110600|gb|EWM28255.1|0.000e+0100.00hypothetical protein Naga_100004g138 [Nannochlorop... [more]
gi|553196528|ref|XP_005856365.1|5.083e-130100.00hypothetical protein NGA_2046900, partial [Nannoch... [more]
gi|299473072|emb|CBN77465.1|1.188e-4437.25conserved unknown protein [Ectocarpus siliculosus][more]
gi|673026348|ref|XP_008867135.1|6.742e-1629.89hypothetical protein H310_04528 [Aphanomyces invad... [more]
gi|698789906|ref|XP_009827985.1|1.978e-1529.11hypothetical protein H257_04993 [Aphanomyces astac... [more]
gi|470324760|ref|XP_004349922.1|4.113e-1431.06hypothetical protein CAOG_01402 [Capsaspora owczar... [more]
gi|673026346|ref|XP_008867134.1|4.561e-1428.70hypothetical protein H310_04527 [Aphanomyces invad... [more]
gi|673026350|ref|XP_008867136.1|1.015e-1328.52hypothetical protein, variant 1 [Aphanomyces invad... [more]
gi|698789924|ref|XP_009827994.1|4.688e-1328.72hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|813177990|ref|XP_012205464.1|6.650e-1326.74hypothetical protein SPRG_11263 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2495rna2495Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications