rna2493, rna2493 (mRNA) Nannochloropsis gaditana

Overview
Namerna2493
Unique Namerna2493
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2433
Alignment locationCM002459.1:515658..517227 +

Link to JBrowse

Properties
Property NameValue
Productferredoxin
Orig transcript idgnl|cribi|Naga_100004g135.9126.mrna
Orig protein idgnl|cribi|Naga_100004g135.9126
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:515658..517227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g135gene2384Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2493rna2493-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28195.1cds2485Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2493 ID=rna2493|Name=rna2493|organism=Nannochloropsis gaditana|type=mRNA|length=2433bp
CGCCTAGACGCCTTGGCAACGAGTGTCATACCACCCATCTTCACAATTCT
ATCATTATCATTGCCCTTTCGAGGAACAGCTTCGAATGATTTTCACATGG
TAGCACTAATTTTATAATACGTATCCTGTCGATAGTTACTATGCTGTCCG
TAACATAGTGAAATTCTGAAAGTCTACAAGAGTGAGGCGGAAGGCAAGCC
ATTGTAACAAACGGCATTTCTGTCGCGAGGACCTCTTAATAAAAATATTT
GATGACACGCGATAAGGATGTAGCACAAAACTCATCCACTGTATACAAGT
ACGGTGCGGTAGAAGTGCCCAAAGATGCACTCTTTCATGGGGACCAGGCC
AATCCCGCGGACGTCAGTTCTCCTCTTGCTGATTCTTTGAAGCCATCCTC
TGCGTCAACAATGCCCATGTACGACCAAAAACGCACATTGTATCGCAATT
TAATCCTATCGCGGCATCTTAGCTCTGCACTCCTTCAACGTATGTGGGAG
TTTTCTGTGATCATGCTCCTCACAGTCATAGGACCTTCGAATTCATTTCA
CCTGATCGCCACATATGGCATCACGGTAAATTTAACGGTCGTACTTTTCT
CCCCATCGATTGGCTCATATATTGATGAAGCAAATCGTCTAAGAGCCGTT
GTGCTTGTGACCTCGATGCAAAATACCTGCGTCGTGGGATGTTGCATTTG
CTTTATCATTGCGCTTTGGGGTCACATTGCAACGGGGTGGGCGTTATCTC
TCTGCGTGGGCTTGATACATGTTGGCGGAGCCCTCAACATGCTTTTTCAG
GGGCTGAGCAATGTTATACTAGAGCGCGACTGGGTTGTTGTTCTTGCAGA
GGACGATGATGCCTGGTTGCGGTCCATCACCACAAACCTGAAAGCCATCG
ACTTATCTTCGAACGTCGTTGCACCTTTTCTCGTCTCTGTCATCCAAAGT
GTGGGTAGCAACTGTGCTGTTGCCTGGACATTGAGCATCCTAAATTTCCT
AATGATTTACATGCAATATCTGGCGCTGCTTCGAATATATCAAGAGGTGC
CGGCTCTGGCGATAAAAGACAGGGGAGTTCAACGAAGCAATCATGATGCG
CAGGTCGGCGACGATGCTGTTTATTTGGACAAAACCGAAGAGGGGCCAGA
GAAGGGACGCATTACTGAATCGCACGCCAGTTATAAAAGGATCACTCAGA
AGTTTTCACATTTTTTCGGCCTCATTGAATCGCGATTCAGTGCAGTTTTC
CGCAATGGCTTCTTGCACGCGCAAATATATGCCCGGCAGCGCACTTTTCT
GCCTGGTCTGGCCATGGCGATGCTATATTTTACTGTTCTGACATTCCACA
ATACTATGTTAGCCTATCTTTTATCTCAGGGACTTCACCTAAATTACGTC
GCTATGGCGCAGGGCGGAAGCGCTGCCATGGGAGTCTTGGGCACGCTGTT
TTATAAATGGGCAGCTACACGTTTTGGGACCGTATGTGTGGGCATAATGG
GCCTCTGGCAGCAGGTTGCTTGTTTGACTGTCGCAGTTGCCGCCTTGTAC
GTACCACTATGGCGAAGAGATCGTCACAATCATGCCGAAGAAGTCAACGT
GGTATCGATCGCAACTGCTTTTTTCATGGGGAGCGTTGGACTTTCCCGAC
TTGGTCTTATCGCATTTGATGTCGCTGGTGCCCAACTTTTCCAGTATCTT
GTGGATGAGGAATCACGCGGCGTCGTAGGTGGTTTCCAACGCACATTAGA
GTCGATGTTCGAATTGCTCATGTACTTCTTGGTTCTTTGGCGGCCTCGTC
CCGATCAGTTTCCATCTTCAGCCGCATTTTCGTACATCACAGTTGTCGCT
GCAGCTTTGATCTTTTCATTCTTTGCTTGCCGGGTACGCGGTATCGGGTT
CGTGGTGCTGAAAGGAGGATTCGAGACTGACGAAAATCGTATAATTGATC
ACGGGGGCAGTAGACCAGCAGCAGCTTCTTCTCCCATTCTTTCCTACAAC
CACTATGACAAATGGCCTGTATCCGACAGCTTCAGGTTGGTTGGTATCAA
AATAGAGAGCTCCTCGCAAGAGACAGCCAAACAATTTAGGGACTGATGTG
ATACTATCAACAACTTCCTTATCTTTCAAACCTTTTCGATGATCAAATGT
AGACGTGAGTCAACCGTTGAAAAGCGTCAGGCTTGAGGTTATACCACGCG
TGATTCTATTAAGGTTTGCTTCGTGTCTATGACATTTTTTTTGTTGCATA
TGTATGCCCGGATTGGATGGGAGAAACAACCACAAACCGTACGGAACAAT
TACTCGTTGCAACAAATTATGCAATCAAAAGCACCAAAAGAGGAAGAGAA
GAAGAAAGACAATTTCGTACTTCCTTATGATTGCCCTTTTCTTTGCCTGT
AGGCAAATTAAGTGTCTCGAACTTTCTCTTCAA
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protein sequence of rna2493

>rna2493-protein ID=rna2493-protein|Name=rna2493|organism=Nannochloropsis gaditana|type=polypeptide|length=158bp
MRGILRFAITMVMITTTVAFFVPVLLTTHKQSRRVGVMTMLGMFGKKSAG
GNKKTFTVTVQQKFYKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYN
CGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASG
DVTVKTKP
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mRNA from alignment at CM002459.1:515658..517227+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2493 ID=rna2493|Name=rna2493|organism=Nannochloropsis gaditana|type=mRNA|length=1570bp|location=Sequence derived from alignment at CM002459.1:515658..517227+ (Nannochloropsis gaditana)
CGGGGTCGGACTCTAGAGGGGCAAGATCGGCAGCCGAGAAACCGAGTGTC
TGGAAGAGAGGCATTCCCGAATGCGTACCATGCTGTTGACGTGTCATAGG
TCCGGGGGAAAATCCGTACAGTTGGTTCTTGCACAGATTGAAACAACCTT
GGCCTGATATGACTCACAAACATTCGTGTACTGTGGAAAGTGTGATTATA
TGTTCACCTGTTGCCGTCATGATGAGTTACCCACGGACTGATCTGTCTCT
ACCACATCAACCGCATTCAGGCGCTCCAAGCATTTTTCACAGCCCATTCA
ATCATGAGGGGGATCTTGCGCTTCGCAATTACTATGGTCATGATAACCAC
GACGGTTGCCTTTTttgtccccgtcctcttgaCCACCCACAAACAAAGTC
GGAGGGTGGGCGTCATGACAATGTTGGGCATGTTCGGCAAGAAGTCCGCT
GGTGGGAACAAGAAAACTTTCACTGTTACGGTACAACAAAAATTTTACAA
AAATGCAGAACTCGAGGTGGAAGCTGGCGCTCCTGTGAATTTACGCAAGG
AGCTTATGAAGAACAAGATTGACATCTATCCTTTGCAGGGCAAGATTTAT
AattgtggtggaggaggacagtgtGGAACATGCGCCATCCAAATTATAAA
GGGCGCCAAGAATTTGAAGTACGTGATATGTAGATGTATTGAACTTAATG
GAACCTGTCCTGTTGTTTTCCCCACCATGTACAGCATCCTCTTTTGACGC
TTTCCAAGCAGTCCCAGTTGAGACCTCTATTGcgcatctctttctccccc
gatcctctctccttgtcgAAAATGAAATAACTCTTTCGTATGTATCGGGA
ACTGGTGTAACCTGATGAGATTTCAAGCATTTTTGCGCAGGTTCCTCAAA
ATTCATAATTAATCGAGTGTTTATGCTGAGCGTCCAACCCCAATTTGATC
TTCCCATCTCTCAACTACAGCCCTAAGTCCCCAGTCGAGGTCAAAGCTTT
GGGtggcaagaaaggggatgACATTAGACTGGCATGCTGCACGCGAGCTT
CTGGTGACGTGACCGTCAAGACCAAACCTTGATTGATTGCGGCAAGATAG
GTTGACCTCAAGTTTGTTGTAGTCGGATTCTACAAAAATTGGAAGTTCAT
AGGGGTGCCAGAGAGACCATGCGCGGCAAGTGGTTCGACATGGGAGAAAA
AGTGAGTGGAAGCCGCGTAAGAGGGGTGAAAAAACGTGTTAGGGCGTAGC
GAGACATACCCGGGCAGGATACGGATCGAGTTACATCTCTGAATACATGT
AGGAGCTCCCTCCCATTTTCATGCATCACGAGTAAACTACTGATAGCATC
AGGTGGTAGCGGTTCTGAAAAGACACTTCATGACTTCCCAAAATATGATC
AGCGCCTCCTTTGCGATAAAATTTGAGGAAAGACGATGATATATACATGC
GCAGAATGATGAATGGACTGAGAGAATAGGGTGAGCGAAATAATTATTGT
TCTCATGATAAGGTTTACTCAAATCTACAACAAGATGACTTCTTTCCGAG
CTTCAATATTATCCTTGTCC
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Coding sequence (CDS) from alignment at CM002459.1:515658..517227+

>rna2493 ID=rna2493|Name=rna2493|organism=Nannochloropsis gaditana|type=CDS|length=954bp|location=Sequence derived from alignment at CM002459.1:515658..517227+ (Nannochloropsis gaditana)
ATGAGGGGGATCTTGCGCTTCGCAATTACTATGGTCATGATAACCACGAC
GGTTGCCTTTTttgtccccgtcctcttgaCCACCCACAAACAAAGTCGGA
GGGTGGGCGTCATGACAATGTTGGGCATGTTCGGCAAGAAGTCCGCTGGT
GGGAACAAGAAAACTTTCACTGTTACGGTACAACAAAAATTTTACAAAAA
TGCAGAACTCGAGGTGGAAGCTGGCGCTCCTGTGAATTTACGCAAGGAGC
TTATGAAGAACAAGATTGACATCTATCCTTTGCAGGGCAAGATTTATAat
tgtggtggaggaggacagtgtGGAACATGCGCCATCCAAATTATAAAGGG
CGCCAAGAATTTGAACCCTAAGTCCCCAGTCGAGGTCAAAGCTTTGGGtg
gcaagaaaggggatgACATTAGACTGGCATGCTGCACGCGAGCTTCTGGT
GACGTGACCGTCAAGACCAAACCTTGAATGAGGGGGATCTTGCGCTTCGC
AATTACTATGGTCATGATAACCACGACGGTTGCCTTTTttgtccccgtcc
tcttgaCCACCCACAAACAAAGTCGGAGGGTGGGCGTCATGACAATGTTG
GGCATGTTCGGCAAGAAGTCCGCTGGTGGGAACAAGAAAACTTTCACTGT
TACGGTACAACAAAAATTTTACAAAAATGCAGAACTCGAGGTGGAAGCTG
GCGCTCCTGTGAATTTACGCAAGGAGCTTATGAAGAACAAGATTGACATC
TATCCTTTGCAGGGCAAGATTTATAattgtggtggaggaggacagtgtGG
AACATGCGCCATCCAAATTATAAAGGGCGCCAAGAATTTGAACCCTAAGT
CCCCAGTCGAGGTCAAAGCTTTGGGtggcaagaaaggggatgACATTAGA
CTGGCATGCTGCACGCGAGCTTCTGGTGACGTGACCGTCAAGACCAAACC
TTGA
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Synonyms
Publications