EWM28195.1, cds2485 (CDS) Nannochloropsis gaditana

Overview
NameEWM28195.1
Unique Namecds2485
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:515961..516325 +
Alignment locationCM002459.1:516628..516739 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28195.1
Productferredoxin
Orig transcript idgnl|cribi|Naga_100004g135.9126.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:515961..516325 +
CM002459.1supercontigCM002459.1:516628..516739 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR012675Beta-grasp_dom
IPR0010412Fe-2S_ferredoxin-type
Homology
BLAST of EWM28195.1 vs. NCBI_GenBank
Match: gi|585110540|gb|EWM28195.1| (ferredoxin [Nannochloropsis gaditana])

HSP 1 Score: 321.627 bits (823), Expect = 3.281e-111
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query:    1 MRGILRFAITMVMITTTVAFFVPVLLTTHKQSRRVGVMTMLGMFGKKSAGGNKKTFTVTVQQKFYKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158
            MRGILRFAITMVMITTTVAFFVPVLLTTHKQSRRVGVMTMLGMFGKKSAGGNKKTFTVTVQQKFYKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP
Sbjct:    1 MRGILRFAITMVMITTTVAFFVPVLLTTHKQSRRVGVMTMLGMFGKKSAGGNKKTFTVTVQQKFYKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158          
BLAST of EWM28195.1 vs. NCBI_GenBank
Match: gi|493669812|ref|WP_006620154.1| (MULTISPECIES: iron ABC transporter substrate-binding protein [Arthrospira] >gi|209493345|gb|EDZ93670.1| ferredoxin [Arthrospira maxima CS-328] >gi|291567887|dbj|BAI90159.1| probable 2Fe-2S ferredoxin [Arthrospira platensis NIES-39] >gi|375323708|emb|CCE20850.1| Ferredoxin (2Fe-2S) [Arthrospira sp. PCC 8005] >gi|406715768|gb|EKD10921.1| ferredoxin [Arthrospira platensis C1] >gi|585304001|emb|CDM93456.1| Ferredoxin (2Fe-2S) [Arthrospira sp. PCC 8005] >gi|647978564|gb|KDR55691.1| iron ABC transporter substrate-binding protein [Arthrospira platensis str. Paraca] >gi|1015661917|gb|AMW28279.1| iron ABC transporter substrate-binding protein [Arthrospira platensis YZ])

HSP 1 Score: 97.4413 bits (241), Expect = 1.684e-23
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 0
Query:   65 YKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158
            + N   EV A    NLR + M+N+ID+Y L+GK+ NCGG GQCGTC +++++G +NL+PK+PVE + L  KK D  RLAC T  +G V+V+TKP
Sbjct:    6 FVNENREVIAADGANLRLKAMENQIDLYTLKGKLLNCGGYGQCGTCIVEVVEGMENLSPKTPVEERML-KKKPDTYRLACQTTVNGPVSVRTKP 98          
BLAST of EWM28195.1 vs. NCBI_GenBank
Match: gi|748153534|ref|WP_039727861.1| (iron ABC transporter substrate-binding protein [Lyngbya confervoides] >gi|746958122|gb|KIF15661.1| iron ABC transporter substrate-binding protein [Aphanocapsa montana BDHKU210001] >gi|746984891|gb|KIF40583.1| iron ABC transporter substrate-binding protein [Lyngbya confervoides BDU141951])

HSP 1 Score: 95.9005 bits (237), Expect = 6.704e-23
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 0
Query:   65 YKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158
            + N + EV A    NLR + M+N IDIY L GK+ NCGG GQCGTC ++I +G++NL+P++ VE + L  K+ ++ RLAC T  +GD+TVKTKP
Sbjct:    6 FLNEDKEVIAADGANLRYKAMENDIDIYTLVGKMMNCGGYGQCGTCVVEITEGSENLSPRTQVEERKL-RKRPENCRLACQTLVNGDITVKTKP 98          
BLAST of EWM28195.1 vs. NCBI_GenBank
Match: gi|1003383629|dbj|BAU63453.1| (ferredoxin [Stanieria sp. NIES-3757])

HSP 1 Score: 94.7449 bits (234), Expect = 1.948e-22
Identity = 47/96 (48.96%), Postives = 69/96 (71.88%), Query Frame = 0
Query:   63 KFYKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158
            KF K  + E+ A    NLR++ ++N IDIY L+GK+ NCGG GQCGTC ++I++G ++L+PK+P E + L  +K D  RLAC T  +G+++VKTKP
Sbjct:    5 KFVKE-DKEIIAANGANLREKALQNGIDIYTLRGKLVNCGGYGQCGTCIVEIVEGMEHLSPKTPFEARKL-KRKPDSYRLACQTLVNGEISVKTKP 98          
BLAST of EWM28195.1 vs. NCBI_GenBank
Match: gi|499751213|ref|WP_011431947.1| (iron ABC transporter substrate-binding protein [Synechococcus sp. JA-2-3B'a(2-13)] >gi|86556321|gb|ABD01278.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-2-3B'a(2-13)])

HSP 1 Score: 93.9745 bits (232), Expect = 4.077e-22
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = 0
Query:   66 KNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158
            +N E+ V  GA  NLR + ++N+ID+Y +  K+ NCGG GQCGTC ++I++G++NL+P++  E + L  +K D  RLAC T+  GDV+VKTKP
Sbjct:    9 ENREIFVAEGA--NLRLKALENQIDLYKMMAKLLNCGGNGQCGTCVVEIVEGSENLSPRTEAENRKL-KRKPDSYRLACQTKVLGDVSVKTKP 98          
BLAST of EWM28195.1 vs. NCBI_GenBank
Match: gi|499748806|ref|WP_011429540.1| (iron ABC transporter substrate-binding protein [Synechococcus sp. JA-3-3Ab] >gi|86553899|gb|ABC98857.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-3-3Ab])

HSP 1 Score: 93.5893 bits (231), Expect = 4.594e-22
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 0
Query:   66 KNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158
            +N E+ V  GA  NLR + ++N+ID+Y +  K+ NCGG GQCGTC ++I++GA+NL+P++  E + L  +K D  RLAC T+  GDV VKTKP
Sbjct:    9 ENREIVVAEGA--NLRLKALENQIDLYKMMAKLLNCGGNGQCGTCVVEIVEGAENLSPRTEAENRKL-KRKPDTYRLACQTKVLGDVAVKTKP 98          
BLAST of EWM28195.1 vs. NCBI_GenBank
Match: gi|1094115057|ref|WP_071104556.1| (iron ABC transporter substrate-binding protein [Moorea producens] >gi|1092222865|gb|AOY81207.1| iron ABC transporter substrate-binding protein [Moorea producens JHB])

HSP 1 Score: 93.9745 bits (232), Expect = 4.971e-22
Identity = 48/96 (50.00%), Postives = 68/96 (70.83%), Query Frame = 0
Query:   63 KFYKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158
            KF K  + EV A    NLR+++++N+ID+Y  +GK+ NCGG GQCGTC ++I+ G +NL+P++ VE + L  KK D+ RLAC    +G VTVKTKP
Sbjct:    5 KFVKEDQ-EVIAANGANLREKMLQNRIDLYTFRGKLVNCGGYGQCGTCIVEIVAGIENLSPRTEVENRKL-KKKPDNYRLACQVLVNGPVTVKTKP 98          
BLAST of EWM28195.1 vs. NCBI_GenBank
Match: gi|442790976|gb|ELS00477.1| (ferredoxin [Xenococcus sp. PCC 7305])

HSP 1 Score: 93.2041 bits (230), Expect = 1.029e-21
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 0
Query:   63 KFYKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158
            KF K  E EV      NLR+  ++NKIDIY L+GK+ NCGG GQCGTC ++I++G +NL+P++  E + L  KK D  RLAC    +G VTV TKP
Sbjct:   10 KFVKE-EKEVVFALGANLRERALENKIDIYTLKGKLTNCGGYGQCGTCVVEIVEGMENLSPRTAFEQRKL-KKKPDSYRLACQATVNGSVTVATKP 103          
BLAST of EWM28195.1 vs. NCBI_GenBank
Match: gi|1054575551|ref|WP_066344425.1| (iron ABC transporter substrate-binding protein [Geminocystis sp. NIES-3708] >gi|770467597|dbj|BAQ60495.1| ferredoxin [Geminocystis sp. NIES-3708])

HSP 1 Score: 92.8189 bits (229), Expect = 1.048e-21
Identity = 48/94 (51.06%), Postives = 63/94 (67.02%), Query Frame = 0
Query:   65 YKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158
            + N   EV A    NLR++ ++N IDIY  +GK+ NCGG GQC TC I+I+ G +NL+PK+  E + L  KK    RLAC T A+GDVT+KTKP
Sbjct:    6 FINENKEVVAADGANLREKALQNGIDIYKFRGKLMNCGGYGQCATCVIEIVSGIENLSPKTDFEERKL-RKKPASYRLACQTLANGDVTIKTKP 98          
BLAST of EWM28195.1 vs. NCBI_GenBank
Match: gi|504957989|ref|WP_015145091.1| (ferredoxin [Pleurocapsa minor] >gi|427981192|gb|AFY78792.1| ferredoxin [Pleurocapsa sp. PCC 7327])

HSP 1 Score: 92.8189 bits (229), Expect = 1.048e-21
Identity = 47/90 (52.22%), Postives = 65/90 (72.22%), Query Frame = 0
Query:   69 ELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158
            E EV A    NLR++ ++N+IDIY L+GK+ NCGG GQCGTC ++I++G +NL+PK+  E++ L  KK +  RLAC T  +G V VKTKP
Sbjct:   10 EKEVIAADGANLREKALQNRIDIYTLKGKLTNCGGYGQCGTCIVEIVEGMENLSPKTDFELRKL-KKKPESYRLACQTLVNGPVKVKTKP 98          
The following BLAST results are available for this feature:
BLAST of EWM28195.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110540|gb|EWM28195.1|3.281e-111100.00ferredoxin [Nannochloropsis gaditana][more]
gi|493669812|ref|WP_006620154.1|1.684e-2351.06MULTISPECIES: iron ABC transporter substrate-bindi... [more]
gi|748153534|ref|WP_039727861.1|6.704e-2351.06iron ABC transporter substrate-binding protein [Ly... [more]
gi|1003383629|dbj|BAU63453.1|1.948e-2248.96ferredoxin [Stanieria sp. NIES-3757][more]
gi|499751213|ref|WP_011431947.1|4.077e-2248.39iron ABC transporter substrate-binding protein [Sy... [more]
gi|499748806|ref|WP_011429540.1|4.594e-2249.46iron ABC transporter substrate-binding protein [Sy... [more]
gi|1094115057|ref|WP_071104556.1|4.971e-2250.00iron ABC transporter substrate-binding protein [Mo... [more]
gi|442790976|gb|ELS00477.1|1.029e-2151.04ferredoxin [Xenococcus sp. PCC 7305][more]
gi|1054575551|ref|WP_066344425.1|1.048e-2151.06iron ABC transporter substrate-binding protein [Ge... [more]
gi|504957989|ref|WP_015145091.1|1.048e-2152.22ferredoxin [Pleurocapsa minor] >gi|427981192|gb|AF... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2493rna2493Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications