rna2492, rna2492 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2492
Unique Name	rna2492
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1416
Alignment location	CM002459.1:513209..515641 -

Link to JBrowse

Properties


Property Name	Value
Product	solute carrier family 40 member 1
Orig transcript id	gnl\|cribi\|Naga_100004g134.9211.mrna
Orig protein id	gnl\|cribi\|Naga_100004g134.9211
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:513209..515641 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g134	gene2383	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28280.1	cds2484	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2492	rna2492-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:513209..515641-
coding sequence from alignment at CM002459.1:513209..515641-

mRNA sequence

>rna2492 ID=rna2492|Name=rna2492|organism=Nannochloropsis gaditana|type=mRNA|length=1416bp
AACGACCCTACTGAAGGGACTGATAAAATGACAGCCCTTACGACGCTATC
GCCATCAGAAGCGTGGGTTCATGTCTTGCAAGGAGAAAGGTGTCAATTTA
AGCATTCCCTCTTGTTCAGGCCGCTCAAGATATACACCTCCTTTAATTTT
TATTGCTCCCCATAGCATGCTAACCTGCTCCACCTCTTCAGATCTCGTTG
ACCTATTAGGAATAAGAAACCTTCACTCGGGTGACTTTTCGCCCAAAGTT
TTATCTCGAAAGGAAGCTAGCGCCAGTATCATGGCTGATACCGCTGGTCC
ATCCGCGGGGAAGATGAGGAAGGTCGTTTTCAAACTTTTAGAAAACAACG
ATTACAATCCTGGTATAACATTGGGCCAAATTCGCAATAAACTTGAAAAG
AAGCTCGGAGATAAGTACCCAGGCTTCGATTTTGCGTCTTTCGCATTCAA
AATAAAATCACGAAGCGTCATCGAGGACGTTATTCATGCCTTCGAGGAGG
TAGCGTACTCCGGTATTCATCTGGCTCCGACCAAAGGCAGTACATCCACC
GCAGCCAACAGGATCGCAATCAAAGCCCAGAAAGTAGAAGAGAAGCGGTC
ATTCAAATCCAGCGACAACTCGGGAAATGTAAGCAAGAAGCAAAGAACAG
AGGAACTCAGCCTAAAAGAAGGTAGAAATATCACAGGGAAGGATACGACT
TCTGGGCGGCAGCAGCAAGATCCTCGAATCCAGCGTTTAGCAAAGCTTGC
GGTGGCGATGGGCCTCATGCCTGCCATTTTTGAAGGCCTAGAGGATGTGG
ATGACGAAGAAAAAGTAAAAATGTTGCGCCACCGGTTGAAGACGAAGGGA
GCAGTGTTCGATAATCTGCCATCTATCGAACAGATCAAAGCTGCACAGGC
AAGCAATAGCCCGCAAAGAGTTTCGCAAAGCATAGACTCGAACCGTGATG
AAGTTTTGGGGGACGGTGCTACCACCATTTCGAGTTAAGTAAATGTTCCA
AGCACTTTGTGCTCATCTGCGCAAGATTCGAGTGATTCAAAGATGAAACA
AAGAGAGCACTGAAAGCAGATTCCAGAGGGTGCTGAATGCTCCAGTGCAA
GCACTATTAATGTCAGACCGAGGAGTTTGACAGGAAAGGTCGGGGTATGA
GAAAGCTGTACTTCATTTGAAGAGAAAGTTCGAGACACTTAATTTGCCTA
CAGGCAAAGAAAAGGGCAATCATAAGGAAGTACGAAATTGTCTTTCTTCT
TCTCTTCCTCTTTTGGTGCTTTTGATTGCATAATTTGTTGCAACGAGTAA
TTGTTCCGTACGGTTTGTGGTTGTTTCTCCCATCCAATCCGGGCATACAT
ATGCAACAAAAAAAATGTCATAGACACGAAGCAAACCTTAATAGAATCAC
GCGTGGTATAACCTCA

protein sequence of rna2492

>rna2492-protein ID=rna2492-protein|Name=rna2492|organism=Nannochloropsis gaditana|type=polypeptide|length=614bp
MTRDKDVAQNSSTVYKYGAVEVPKDALFHGDQANPADVSSPLADSLKPSS
ASTMPMYDQKRTLYRNLILSRHLSSALLQRMWEFSVIMLLTVIGPSNSFH
LIATYGITVNLTVVLFSPSIGSYIDEANRLRAVVLVTSMQNTCVVGCCIC
FIIALWGHIATGWALSLCVGLIHVGGALNMLFQGLSNVILERDWVVVLAE
DDDAWLRSITTNLKAIDLSSNVVAPFLVSVIQSVGSNCAVAWTLSILNFL
MIYMQYLALLRIYQEVPALAIKDRGVQRSNHDAQVGDDAVYLDKTEEGPE
KGRITESHASYKRITQKFSHFFGLIESRFSAVFRNGFLHAQIYARQRTFL
PGLAMAMLYFTVLTFHNTMLAYLLSQGLHLNYVAMAQGGSAAMGVLGTLF
YKWAATRFGTVCVGIMGLWQQVACLTVAVAALYVPLWRRDRHNHAEEVNV
VSIATAFFMGSVGLSRLGLIAFDVAGAQLFQYLVDEESRGVVGGFQRTLE
SMFELLMYFLVLWRPRPDQFPSSAAFSYITVVAAALIFSFFACRVRGIGF
VVLKGGFETDENRIIDHGGSRPAAASSPILSYNHYDKWPVSDSFRLVGIK
IESSSQETAKQFRD

mRNA from alignment at CM002459.1:513209..515641-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2492 ID=rna2492|Name=rna2492|organism=Nannochloropsis gaditana|type=mRNA|length=2433bp|location=Sequence derived from alignment at CM002459.1:513209..515641- (Nannochloropsis gaditana)
CGCCTAGACGCCTTGGCAACGAGTGTCATACCACCCATCTTCACAATTCT
ATCATTATCATTGCCCTTTCGAGGAACAGCTTCGAATGATTTTCACATGG
TAGCACTAATTTTATAATACGTATCCTGTCGATAGTTACTATGCTGTCCG
TAACATAGTGAAATTCTGAAAGTCTACAAGAGTGAGGCGGAAGGCAAGCC
ATTGTAACAAACGGCATTTCTGTCGCGAGGACCTCTTAATAAAAATATTT
GATGACACGCGATAAGGATGTAGCACAAAACTCATCCACTGTATACAAGT
ACGGTGCGGTAGAAGTGCCCAAAGATGCACTCTTTCATGGGGACCAGGCC
AATCCCGCGGACGTCAGTTCTCCTCTTGCTGATTCTTTGAAGCCATCCTC
TGCGTCAACAATGCCCATGTACGACCAAAAACGCACATTGTATCGCAATT
TAATCCTATCGCGGCATCTTAGCTCTGCACTCCTTCAACGTATGTGGGAG
TTTTCTGTGATCATGCTCCTCACAGTCATAGGACCTTCGAATTCATTTCA
CCTGATCGCCACATATGGCATCACGGTAAATTTAACGGTCGTACTTTTCT
CCCCATCGATTGGCTCATATATTGATGAAGCAAATCGTCTAAGAGCCGTT
GTGCTTGTGACCTCGATGCAAAATACCTGCGTCGTGGGATGTTGCATTTG
CTTTATCATTGCGCTTTGGGGTCACATTGCAACGGGGTGGGCGTTATCTC
TCTGCGTGGGCTTGATACATGTTGGCGGAGCCCTCAACATGCTTTTTCAG
GGGCTGAGCAATGTTATACTAGAGCGCGACTGGGTTGTTGTTCTTGCAGA
GGACGATGATGCCTGGTTGCGGTCCATCACCACAAACCTGAAAGCCATCG
ACTTATCTTCGAACGTCGTTGCACCTTTTCTCGTCTCTGTCATCCAAAGT
GTGGGTAGCAACTGTGCTGTTGCCTGGACATTGAGCATCCTAAATTTCCT
AATGATTTACATGCAATATCTGGCGCTGCTTCGAATATATCAAGAGGTGC
CGGCTCTGGCGATAAAAGACAGGGGAGTTCAACGAAGCAATCATGATGCG
CAGGTCGGCGACGATGCTGTTTATTTGGACAAAACCGAAGAGGGGCCAGA
GAAGGGACGCATTACTGAATCGCACGCCAGTTATAAAAGGATCACTCAGA
AGTTTTCACATTTTTTCGGCCTCATTGAATCGCGATTCAGTGCAGTTTTC
CGCAATGGCTTCTTGCACGCGCAAATATATGCCCGGCAGCGCACTTTTCT
GCCTGGTCTGGCCATGGCGATGCTATATTTTACTGTTCTGACATTCCACA
ATACTATGTTAGCCTATCTTTTATCTCAGGGACTTCACCTAAATTACGTC
GCTATGGCGCAGGGCGGAAGCGCTGCCATGGGAGTCTTGGGCACGCTGTT
TTATAAATGGGCAGCTACACGTTTTGGGACCGTATGTGTGGGCATAATGG
GCCTCTGGCAGCAGGTTGCTTGTTTGACTGTCGCAGTTGCCGCCTTGTAC
GTACCACTATGGCGAAGAGATCGTCACAATCATGCCGAAGAAGTCAACGT
GGTATCGATCGCAACTGCTTTTTTCATGGGGAGCGTTGGACTTTCCCGAC
TTGGTCTTATCGCATTTGATGTCGCTGGTGCCCAACTTTTCCAGTATCTT
GTGGATGAGGAATCACGCGGCGTCGTAGGTGGTTTCCAACGCACATTAGA
GTCGATGTTCGAATTGCTCATGTACTTCTTGGTTCTTTGGCGGCCTCGTC
CCGATCAGTTTCCATCTTCAGCCGCATTTTCGTACATCACAGTTGTCGCT
GCAGCTTTGATCTTTTCATTCTTTGCTTGCCGGGTACGCGGTATCGGGTT
CGTGGTGCTGAAAGGAGGATTCGAGACTGACGAAAATCGTATAATTGATC
ACGGGGGCAGTAGACCAGCAGCAGCTTCTTCTCCCATTCTTTCCTACAAC
CACTATGACAAATGGCCTGTATCCGACAGCTTCAGGTTGGTTGGTATCAA
AATAGAGAGCTCCTCGCAAGAGACAGCCAAACAATTTAGGGACTGATGTG
ATACTATCAACAACTTCCTTATCTTTCAAACCTTTTCGATGATCAAATGT
AGACGTGAGTCAACCGTTGAAAAGCGTCAGGCTTGAGGTTATACCACGCG
TGATTCTATTAAGGTTTGCTTCGTGTCTATGACATTTTTTTTGTTGCATA
TGTATGCCCGGATTGGATGGGAGAAACAACCACAAACCGTACGGAACAAT
TACTCGTTGCAACAAATTATGCAATCAAAAGCACCAAAAGAGGAAGAGAA
GAAGAAAGACAATTTCGTACTTCCTTATGATTGCCCTTTTCTTTGCCTGT
AGGCAAATTAAGTGTCTCGAACTTTCTCTTCAA

Coding sequence (CDS) from alignment at CM002459.1:513209..515641-

>rna2492 ID=rna2492|Name=rna2492|organism=Nannochloropsis gaditana|type=CDS|length=1845bp|location=Sequence derived from alignment at CM002459.1:513209..515641- (Nannochloropsis gaditana)
ATGACACGCGATAAGGATGTAGCACAAAACTCATCCACTGTATACAAGTA
CGGTGCGGTAGAAGTGCCCAAAGATGCACTCTTTCATGGGGACCAGGCCA
ATCCCGCGGACGTCAGTTCTCCTCTTGCTGATTCTTTGAAGCCATCCTCT
GCGTCAACAATGCCCATGTACGACCAAAAACGCACATTGTATCGCAATTT
AATCCTATCGCGGCATCTTAGCTCTGCACTCCTTCAACGTATGTGGGAGT
TTTCTGTGATCATGCTCCTCACAGTCATAGGACCTTCGAATTCATTTCAC
CTGATCGCCACATATGGCATCACGGTAAATTTAACGGTCGTACTTTTCTC
CCCATCGATTGGCTCATATATTGATGAAGCAAATCGTCTAAGAGCCGTTG
TGCTTGTGACCTCGATGCAAAATACCTGCGTCGTGGGATGTTGCATTTGC
TTTATCATTGCGCTTTGGGGTCACATTGCAACGGGGTGGGCGTTATCTCT
CTGCGTGGGCTTGATACATGTTGGCGGAGCCCTCAACATGCTTTTTCAGG
GGCTGAGCAATGTTATACTAGAGCGCGACTGGGTTGTTGTTCTTGCAGAG
GACGATGATGCCTGGTTGCGGTCCATCACCACAAACCTGAAAGCCATCGA
CTTATCTTCGAACGTCGTTGCACCTTTTCTCGTCTCTGTCATCCAAAGTG
TGGGTAGCAACTGTGCTGTTGCCTGGACATTGAGCATCCTAAATTTCCTA
ATGATTTACATGCAATATCTGGCGCTGCTTCGAATATATCAAGAGGTGCC
GGCTCTGGCGATAAAAGACAGGGGAGTTCAACGAAGCAATCATGATGCGC
AGGTCGGCGACGATGCTGTTTATTTGGACAAAACCGAAGAGGGGCCAGAG
AAGGGACGCATTACTGAATCGCACGCCAGTTATAAAAGGATCACTCAGAA
GTTTTCACATTTTTTCGGCCTCATTGAATCGCGATTCAGTGCAGTTTTCC
GCAATGGCTTCTTGCACGCGCAAATATATGCCCGGCAGCGCACTTTTCTG
CCTGGTCTGGCCATGGCGATGCTATATTTTACTGTTCTGACATTCCACAA
TACTATGTTAGCCTATCTTTTATCTCAGGGACTTCACCTAAATTACGTCG
CTATGGCGCAGGGCGGAAGCGCTGCCATGGGAGTCTTGGGCACGCTGTTT
TATAAATGGGCAGCTACACGTTTTGGGACCGTATGTGTGGGCATAATGGG
CCTCTGGCAGCAGGTTGCTTGTTTGACTGTCGCAGTTGCCGCCTTGTACG
TACCACTATGGCGAAGAGATCGTCACAATCATGCCGAAGAAGTCAACGTG
GTATCGATCGCAACTGCTTTTTTCATGGGGAGCGTTGGACTTTCCCGACT
TGGTCTTATCGCATTTGATGTCGCTGGTGCCCAACTTTTCCAGTATCTTG
TGGATGAGGAATCACGCGGCGTCGTAGGTGGTTTCCAACGCACATTAGAG
TCGATGTTCGAATTGCTCATGTACTTCTTGGTTCTTTGGCGGCCTCGTCC
CGATCAGTTTCCATCTTCAGCCGCATTTTCGTACATCACAGTTGTCGCTG
CAGCTTTGATCTTTTCATTCTTTGCTTGCCGGGTACGCGGTATCGGGTTC
GTGGTGCTGAAAGGAGGATTCGAGACTGACGAAAATCGTATAATTGATCA
CGGGGGCAGTAGACCAGCAGCAGCTTCTTCTCCCATTCTTTCCTACAACC
ACTATGACAAATGGCCTGTATCCGACAGCTTCAGGTTGGTTGGTATCAAA
ATAGAGAGCTCCTCGCAAGAGACAGCCAAACAATTTAGGGACTGA

Synonyms

Publications